Wall clock time and date at job start Mon Mar 30 2020 01:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 119.62061 * 2 1 4 4 C 1.38628 * 119.16579 * 180.02562 * 3 2 1 5 5 C 1.38677 * 118.41857 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.41881 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47098 * 89.99960 * 6 5 4 8 8 C 1.52993 * 109.47066 * 179.97438 * 7 6 5 9 9 N 1.46906 * 109.47178 * 180.02562 * 8 7 6 10 10 C 1.47477 * 110.99943 * 265.97390 * 9 8 7 11 11 C 1.53510 * 87.93305 * 221.29527 * 10 9 8 12 12 O 1.42898 * 114.17195 * 272.37862 * 11 10 9 13 13 C 1.50703 * 114.34809 * 139.68447 * 11 10 9 14 14 H 1.07996 * 119.99962 * 266.08442 * 13 11 10 15 15 C 1.37877 * 119.99831 * 86.07274 * 13 11 10 16 16 N 1.31517 * 119.99747 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 120.00050 * 0.02562 * 15 13 11 18 18 H 1.48491 * 109.47204 * 89.99613 * 17 15 13 19 19 H 1.48500 * 109.46701 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47176 * 329.99194 * 17 15 13 21 21 C 1.47483 * 111.00084 * 170.00086 * 9 8 7 22 22 C 1.38184 * 119.16194 * 0.02562 * 5 4 3 23 23 N 1.31854 * 119.61606 * 180.02562 * 2 1 3 24 24 H 1.08993 * 109.47293 * 269.97518 * 1 2 3 25 25 H 1.09001 * 109.46879 * 29.98061 * 1 2 3 26 26 H 1.09006 * 109.47370 * 149.97248 * 1 2 3 27 27 H 1.08004 * 120.42025 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.79538 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.46574 * 210.00166 * 6 5 4 30 30 H 1.08994 * 109.46982 * 329.99952 * 6 5 4 31 31 H 1.08993 * 109.47281 * 299.99960 * 7 6 5 32 32 H 1.09001 * 109.46924 * 59.99900 * 7 6 5 33 33 H 1.09002 * 109.47458 * 300.00042 * 8 7 6 34 34 H 1.09001 * 109.47053 * 60.00319 * 8 7 6 35 35 H 1.08999 * 113.48247 * 336.06067 * 10 9 8 36 36 H 1.09002 * 113.47648 * 106.52790 * 10 9 8 37 37 H 0.96694 * 114.00226 * 273.84042 * 12 11 10 38 38 H 0.96997 * 119.99861 * 180.02562 * 16 15 13 39 39 H 1.08993 * 113.47686 * 253.47216 * 21 9 8 40 40 H 1.09009 * 113.47502 * 23.87986 * 21 9 8 41 41 H 1.07999 * 119.61911 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2015 0.0000 4 6 3.5763 1.1905 -0.0005 5 6 4.2266 -0.0343 -0.0016 6 6 5.7323 -0.0989 -0.0028 7 6 6.2429 -0.1214 1.4392 8 6 7.7714 -0.1876 1.4380 9 7 8.2617 -0.2098 2.8226 10 6 8.5885 1.1504 3.2894 11 6 9.8382 0.5607 3.9581 12 8 9.6188 0.0766 5.2846 13 6 11.0721 1.4169 3.8336 14 1 11.7686 1.2463 3.0261 15 6 11.3116 2.4183 4.7506 16 7 12.3882 3.1659 4.6417 17 14 10.1071 2.7132 6.1476 18 1 10.4962 1.8879 7.3192 19 1 10.1285 4.1493 6.5247 20 1 8.7391 2.3368 5.7094 21 6 9.7046 -0.5116 2.8676 22 6 3.4766 -1.1949 -0.0026 23 7 2.1586 -1.1463 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5143 27 1 1.6508 2.1373 -0.0004 28 1 4.1366 2.1139 -0.0001 29 1 6.0567 -1.0035 -0.5174 30 1 6.1329 0.7749 -0.5165 31 1 5.9185 0.7831 1.9537 32 1 5.8421 -0.9952 1.9529 33 1 8.0955 -1.0923 0.9236 34 1 8.1725 0.6861 0.9241 35 1 8.8157 1.8445 2.4803 36 1 7.8648 1.5516 3.9990 37 1 9.7036 0.7539 5.9694 38 1 12.5569 3.8701 5.2871 39 1 9.9268 -1.5189 3.2196 40 1 10.2294 -0.2621 1.9453 41 1 3.9753 -2.1528 -0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428281106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:00 Heat of formation + Delta-G solvation = -0.658944 kcal Electronic energy + Delta-G solvation = -20650.517312 eV Core-core repulsion = 17530.589058 eV Total energy + Delta-G solvation = -3119.928254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32982 -41.10627 -37.25814 -35.98826 -34.55017 -33.22796 -33.13645 -30.38029 -28.64407 -26.89159 -26.72349 -24.71055 -24.10381 -22.40369 -21.79723 -20.89670 -19.35125 -18.18365 -17.66401 -17.21415 -16.87278 -16.40036 -16.09017 -15.55325 -15.44704 -15.25508 -15.09745 -14.65107 -14.23061 -14.13439 -13.93066 -13.84425 -13.52197 -13.17005 -13.02749 -12.93656 -12.79010 -12.56842 -12.41765 -12.15240 -12.01418 -11.87275 -11.46044 -11.11899 -10.94186 -10.71012 -10.41999 -10.36972 -9.76099 -9.64382 -8.46016 -6.55455 0.15113 0.34634 1.20554 1.26932 1.35756 2.14549 2.76678 2.78853 3.06726 3.40555 3.52471 3.79392 3.85057 3.91047 4.00980 4.07573 4.09685 4.16132 4.32986 4.39961 4.50683 4.58202 4.69717 4.72529 4.75352 4.78347 4.81604 4.82584 4.91080 4.93147 5.06761 5.13500 5.18999 5.22387 5.30149 5.35185 5.42004 5.50119 5.82467 6.00930 6.25130 6.49257 6.75206 7.05021 7.12135 8.69854 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.003183 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.573900 B = 8795.558403 C = 9118.401044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.098 3.902 3 C -0.173 4.173 4 C -0.080 4.080 5 C -0.139 4.139 6 C -0.066 4.066 7 C -0.091 4.091 8 C 0.016 3.984 9 N -0.474 5.474 10 C -0.022 4.022 11 C 0.181 3.819 12 O -0.556 6.556 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.023 3.977 16 N -0.927 5.927 17 Si 0.922 3.078 18 H -0.254 1.254 19 H -0.281 1.281 20 H -0.240 1.240 21 C 0.024 3.976 22 C 0.090 3.910 23 N -0.513 5.513 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.349 0.651 38 H 0.273 0.727 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.720 -3.164 -10.234 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.039 4.039 3 C -0.192 4.192 4 C -0.106 4.106 5 C -0.141 4.141 6 C -0.105 4.105 7 C -0.130 4.130 8 C -0.113 4.113 9 N -0.196 5.196 10 C -0.152 4.152 11 C 0.140 3.860 12 O -0.367 6.367 13 C -0.581 4.581 14 H 0.070 0.930 15 C -0.177 4.177 16 N -0.565 5.565 17 Si 0.747 3.253 18 H -0.180 1.180 19 H -0.208 1.208 20 H -0.164 1.164 21 C -0.105 4.105 22 C -0.067 4.067 23 N -0.223 5.223 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.176 0.824 28 H 0.167 0.833 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.202 0.798 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.698 -4.778 -10.157 24.429 hybrid contribution 1.304 2.128 0.494 2.544 sum -20.394 -2.650 -9.663 22.722 Atomic orbital electron populations 1.20765 0.87129 1.04210 1.03674 1.21824 0.98471 0.88487 0.95103 1.22262 0.94914 1.00014 1.02018 1.21850 0.94889 0.98552 0.95294 1.21004 0.97660 0.94258 1.01215 1.20468 0.89117 1.04404 0.96474 1.21303 0.93555 1.01895 0.96198 1.22792 0.96589 1.01898 0.90014 1.68819 1.14946 1.15679 1.20191 1.24784 0.98195 0.92078 1.00111 1.20266 0.91746 0.93104 0.80890 1.86455 1.93883 1.39830 1.16526 1.21497 1.07381 1.15627 1.13559 0.92963 1.25836 0.96762 0.94921 1.00178 1.70003 1.27605 1.21106 1.37812 0.86276 0.80813 0.78079 0.80152 1.18003 1.20791 1.16439 1.23840 0.89374 0.99766 0.97490 1.22918 0.89176 0.98982 0.95583 1.67531 1.10530 1.30587 1.13656 0.89881 0.88637 0.90956 0.82390 0.83329 0.89218 0.89873 0.93191 0.92035 0.89799 0.93480 0.90771 0.91546 0.79844 0.91801 0.90212 0.90173 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.17 71.24 0.72 -0.59 16 2 C 0.10 1.94 6.78 42.55 0.29 2.23 16 3 C -0.17 -2.96 9.74 22.36 0.22 -2.74 16 4 C -0.08 -1.47 9.86 22.47 0.22 -1.25 16 5 C -0.14 -2.79 5.15 -19.77 -0.10 -2.89 16 6 C -0.07 -1.21 5.37 29.85 0.16 -1.05 16 7 C -0.09 -2.20 5.52 30.59 0.17 -2.03 16 8 C 0.02 0.44 4.82 86.30 0.42 0.85 16 9 N -0.47 -17.55 6.33 -928.21 -5.88 -23.43 16 10 C -0.02 -0.91 6.55 83.58 0.55 -0.37 16 11 C 0.18 8.56 1.09 -11.19 -0.01 8.55 16 12 O -0.56 -27.07 13.32 -148.98 -1.98 -29.06 16 13 C -0.54 -29.97 9.28 25.60 0.24 -29.73 16 14 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 15 C 0.02 1.30 5.47 84.65 0.46 1.76 16 16 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 17 Si 0.92 41.04 24.41 68.60 1.67 42.71 16 18 H -0.25 -10.75 7.06 99.48 0.70 -10.05 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.24 -10.06 5.47 99.48 0.54 -9.52 16 21 C 0.02 0.97 7.09 83.58 0.59 1.57 16 22 C 0.09 1.96 10.86 84.67 0.92 2.88 16 23 N -0.51 -12.24 10.27 -183.89 -1.89 -14.13 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 26 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 29 H 0.09 1.40 8.09 -2.38 -0.02 1.38 16 30 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 34 H 0.05 1.31 7.30 -2.39 -0.02 1.29 16 35 H 0.07 3.00 7.38 -2.39 -0.02 2.98 16 36 H 0.07 2.75 7.11 -2.39 -0.02 2.73 16 37 H 0.35 16.15 3.17 -74.06 -0.23 15.92 16 38 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 3.07 7.87 -2.38 -0.02 3.05 16 41 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -66.46 332.11 -2.33 -68.79 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 0.61 Total: 32.59 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.84 Total: -22.82 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -7.47 Total: -92.21 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.98 Total: -29.06 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.67 Total: 42.71 kcal Total: -66.46 -2.33 -68.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428281106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.127 kcal (2) G-P(sol) polarization free energy of solvation -66.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds