Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38130 * 120.03424 * 2 1 4 4 C 1.38262 * 120.07330 * 180.25570 * 3 2 1 5 5 C 1.38302 * 120.13707 * 0.03916 * 4 3 2 6 6 C 1.38093 * 120.07497 * 359.96287 * 5 4 3 7 7 C 1.38847 * 120.03793 * 180.27911 * 2 1 3 8 8 N 1.39933 * 120.06880 * 359.69635 * 7 2 1 9 9 C 1.34776 * 119.99465 * 145.51739 * 8 7 2 10 10 O 1.21287 * 120.00321 * 4.12004 * 9 8 7 11 11 C 1.50701 * 119.99711 * 184.11438 * 9 8 7 12 12 H 1.09003 * 109.46681 * 60.00120 * 11 9 8 13 13 C 1.53000 * 109.47295 * 300.00659 * 11 9 8 14 14 N 1.46899 * 109.47441 * 180.02562 * 11 9 8 15 15 C 1.46893 * 111.00337 * 209.28882 * 14 11 9 16 16 H 1.09008 * 109.47131 * 329.46852 * 15 14 11 17 17 C 1.53004 * 109.47214 * 209.47039 * 15 14 11 18 18 C 1.50699 * 109.47509 * 89.46716 * 15 14 11 19 19 H 1.08006 * 119.99483 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00165 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00370 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99748 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.47385 * 90.00104 * 22 20 18 24 24 H 1.48506 * 109.46913 * 210.00106 * 22 20 18 25 25 H 1.48505 * 109.47289 * 329.99872 * 22 20 18 26 26 H 1.08992 * 109.46874 * 269.72392 * 1 2 3 27 27 H 1.08997 * 109.46921 * 29.72585 * 1 2 3 28 28 H 1.08998 * 109.46620 * 149.72313 * 1 2 3 29 29 H 1.08011 * 119.96889 * 0.25064 * 3 2 1 30 30 H 1.07997 * 119.93222 * 180.02562 * 4 3 2 31 31 H 1.07998 * 119.96169 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.03395 * 179.97438 * 6 5 4 33 33 H 0.96991 * 119.99988 * 325.52530 * 8 7 2 34 34 H 1.08999 * 109.47175 * 55.02893 * 13 11 9 35 35 H 1.09001 * 109.47003 * 175.02881 * 13 11 9 36 36 H 1.09001 * 109.47222 * 295.02894 * 13 11 9 37 37 H 1.00904 * 110.99714 * 333.24671 * 14 11 9 38 38 H 1.09003 * 109.46916 * 184.85835 * 17 15 14 39 39 H 1.08996 * 109.46812 * 304.85677 * 17 15 14 40 40 H 1.08997 * 109.47277 * 64.85624 * 17 15 14 41 41 H 0.96999 * 120.00168 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1968 -0.0053 5 6 4.2762 0.0012 -0.0115 6 6 3.5910 -1.1978 -0.0116 7 6 2.2021 -1.2020 -0.0059 8 7 1.5047 -2.4151 -0.0053 9 6 2.0000 -3.4773 -0.6708 10 8 3.0853 -3.4046 -1.2073 11 6 1.2053 -4.7554 -0.7482 12 1 0.2505 -4.5605 -1.2365 13 6 0.9563 -5.2875 0.6645 14 7 1.9567 -5.7532 -1.5214 15 6 1.0478 -6.6833 -2.2046 16 1 0.1375 -6.7996 -1.6164 17 6 1.7319 -8.0431 -2.3600 18 6 0.7002 -6.1374 -3.5655 19 1 1.1135 -5.1940 -3.8906 20 6 -0.1446 -6.8428 -4.3960 21 7 -0.6475 -7.9918 -4.0004 22 14 -0.5749 -6.1664 -6.0833 23 1 0.4107 -6.6575 -7.0796 24 1 -1.9354 -6.6217 -6.4669 25 1 -0.5422 -4.6822 -6.0447 26 1 -0.3633 -0.0050 1.0276 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3632 -0.8875 -0.5181 29 1 1.6584 2.1312 0.0041 30 1 4.1193 2.1331 -0.0049 31 1 5.3562 0.0052 -0.0161 32 1 4.1345 -2.1310 -0.0168 33 1 0.6649 -2.4915 0.4738 34 1 0.4773 -4.5141 1.2649 35 1 0.3078 -6.1622 0.6143 36 1 1.9064 -5.5654 1.1209 37 1 2.5791 -5.3075 -2.1787 38 1 1.0926 -8.7069 -2.9421 39 1 2.6847 -7.9139 -2.8732 40 1 1.9055 -8.4771 -1.3753 41 1 -1.2421 -8.4878 -4.5846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -33.987987 kcal Electronic energy + Delta-G solvation = -21369.996682 eV Core-core repulsion = 18248.623173 eV Total energy + Delta-G solvation = -3121.373509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78803 -39.78505 -37.64270 -35.94531 -34.86484 -33.51531 -32.45604 -30.52038 -28.84925 -27.74049 -27.17527 -25.37022 -23.51861 -22.24473 -21.87402 -20.98661 -19.14693 -18.54622 -17.90720 -16.84351 -16.79522 -16.65077 -16.26585 -15.49649 -15.34314 -15.02305 -14.70595 -14.54998 -14.17269 -14.01201 -13.69573 -13.37013 -13.26856 -13.11561 -13.01093 -12.93690 -12.81137 -12.53062 -12.32935 -12.23526 -12.17265 -12.05649 -11.94777 -11.35263 -11.15237 -10.73050 -10.52725 -9.66258 -9.24020 -9.04865 -8.11130 -6.32291 0.29929 0.45841 1.35749 1.38279 1.46790 1.51691 1.97017 2.37685 2.85824 3.10351 3.55524 3.62868 3.94371 3.96417 4.20071 4.23949 4.37646 4.41284 4.53344 4.60663 4.74351 4.80479 4.81662 4.85375 4.94882 5.01939 5.15585 5.22937 5.26964 5.34374 5.37043 5.43363 5.45901 5.58666 5.62319 5.63192 6.02394 6.09991 6.12259 6.24603 6.37783 6.69962 6.91062 7.05551 7.39285 8.87158 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020710 B = 0.004375 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.663153 B = 6398.453463 C = 6890.013526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.144 4.144 7 C 0.123 3.877 8 N -0.658 5.658 9 C 0.518 3.482 10 O -0.550 6.550 11 C 0.071 3.929 12 H 0.068 0.932 13 C -0.125 4.125 14 N -0.674 5.674 15 C 0.215 3.785 16 H 0.018 0.982 17 C -0.116 4.116 18 C -0.562 4.562 19 H 0.041 0.959 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.949 3.051 23 H -0.277 1.277 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.424 0.576 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.334 0.666 38 H 0.063 0.937 39 H 0.020 0.980 40 H 0.029 0.971 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 17.445 11.702 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.120 4.120 3 C -0.125 4.125 4 C -0.151 4.151 5 C -0.138 4.138 6 C -0.165 4.165 7 C 0.029 3.971 8 N -0.304 5.304 9 C 0.306 3.694 10 O -0.427 6.427 11 C -0.043 4.043 12 H 0.086 0.914 13 C -0.183 4.183 14 N -0.307 5.307 15 C 0.106 3.894 16 H 0.036 0.964 17 C -0.175 4.175 18 C -0.601 4.601 19 H 0.059 0.941 20 C -0.174 4.174 21 N -0.545 5.545 22 Si 0.775 3.225 23 H -0.203 1.203 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.172 0.828 30 H 0.168 0.832 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.263 0.737 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.153 0.847 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.877 16.854 11.791 20.654 hybrid contribution -0.757 0.248 -1.728 1.903 sum 1.120 17.102 10.063 19.875 Atomic orbital electron populations 1.20815 0.89162 1.03585 1.03653 1.20046 0.97543 0.91379 1.03023 1.21243 0.94412 0.97519 0.99309 1.21466 0.94622 0.98490 1.00529 1.21280 1.00832 0.91880 0.99766 1.21322 0.93339 0.99544 1.02256 1.17891 0.91500 0.85410 1.02293 1.43371 1.26280 1.08954 1.51801 1.21222 0.86234 0.85465 0.76466 1.90633 1.22406 1.83129 1.46489 1.21517 0.95725 0.88433 0.98585 0.91438 1.21727 1.02395 1.02009 0.92137 1.60984 1.20369 1.18249 1.31099 1.19043 0.89795 0.89836 0.90713 0.96447 1.21545 0.98622 0.98864 0.98465 1.22059 1.28981 1.06034 1.03041 0.94119 1.25584 0.95499 0.95044 1.01312 1.69971 1.32263 1.14404 1.37881 0.85711 0.77756 0.78444 0.80618 1.20317 1.20148 1.20148 0.89077 0.89660 0.92379 0.82826 0.83200 0.84569 0.86849 0.73738 0.89410 0.91919 0.92147 0.84658 0.91835 0.96034 0.95224 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.47 71.24 0.67 -1.13 16 2 C -0.12 -2.52 5.90 -19.74 -0.12 -2.64 16 3 C -0.11 -1.93 9.69 22.25 0.22 -1.72 16 4 C -0.13 -2.48 10.04 22.29 0.22 -2.25 16 5 C -0.12 -2.79 10.04 22.25 0.22 -2.57 16 6 C -0.14 -4.27 8.70 22.39 0.19 -4.08 16 7 C 0.12 3.37 6.29 38.15 0.24 3.61 16 8 N -0.66 -17.76 4.65 -303.50 -1.41 -19.17 16 9 C 0.52 18.25 7.03 87.66 0.62 18.86 16 10 O -0.55 -23.35 12.98 -3.05 -0.04 -23.39 16 11 C 0.07 2.60 2.83 44.17 0.12 2.72 16 12 H 0.07 2.62 7.72 -2.39 -0.02 2.60 16 13 C -0.12 -3.59 9.39 71.98 0.68 -2.92 16 14 N -0.67 -30.20 6.00 -477.16 -2.86 -33.06 16 15 C 0.21 10.90 2.39 44.17 0.11 11.01 16 16 H 0.02 0.94 7.47 -2.38 -0.02 0.92 16 17 C -0.12 -5.86 9.36 71.98 0.67 -5.19 16 18 C -0.56 -31.15 8.50 25.60 0.22 -30.93 16 19 H 0.04 2.31 7.67 -2.91 -0.02 2.29 16 20 C 0.03 1.45 5.29 84.65 0.45 1.89 16 21 N -0.91 -51.14 11.29 21.45 0.24 -50.90 16 22 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.06 1.02 7.18 -2.39 -0.02 1.01 16 29 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.11 3.93 6.19 -2.91 -0.02 3.91 16 33 H 0.42 8.51 7.09 -92.71 -0.66 7.85 16 34 H 0.09 1.79 7.34 -2.39 -0.02 1.77 16 35 H 0.06 1.92 7.87 -2.39 -0.02 1.90 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.33 16.28 6.88 -89.69 -0.62 15.66 16 38 H 0.06 3.45 5.95 -2.39 -0.01 3.44 16 39 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -66.59 335.20 2.24 -64.35 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -0.24 Total: 31.71 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.52 Total: -15.32 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -4.03 Total: -103.13 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.59 2.24 -64.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.365 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds