Wall clock time and date at job start Mon Mar 30 2020 01:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.46875 * 2 1 4 4 C 1.53005 * 109.46848 * 239.99949 * 2 1 3 5 5 C 1.53000 * 109.46514 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47433 * 60.00217 * 5 4 2 7 7 H 1.08998 * 109.47721 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47264 * 59.99383 * 6 5 4 9 9 C 1.38095 * 120.00283 * 155.00254 * 8 6 5 10 10 N 1.32267 * 119.90233 * 0.02562 * 9 8 6 11 11 C 1.31976 * 121.86937 * 179.97438 * 10 9 8 12 12 C 1.38688 * 121.44366 * 359.97438 * 11 10 9 13 13 C 1.38007 * 119.62432 * 0.02562 * 12 11 10 14 14 C 1.41004 * 118.28436 * 359.74552 * 13 12 11 15 15 C 1.41017 * 120.70518 * 180.24920 * 14 13 12 16 16 H 1.08008 * 119.99954 * 154.90236 * 15 14 13 17 17 C 1.39943 * 120.00157 * 334.89567 * 15 14 13 18 18 N 1.30865 * 120.00182 * 343.57911 * 17 15 14 19 19 Si 1.86805 * 119.99932 * 163.57458 * 17 15 14 20 20 H 1.48492 * 109.47301 * 90.00135 * 19 17 15 21 21 H 1.48497 * 109.46904 * 210.00377 * 19 17 15 22 22 H 1.48504 * 109.47068 * 330.00096 * 19 17 15 23 23 C 1.53007 * 109.47177 * 299.99807 * 6 5 4 24 24 C 1.52999 * 109.46896 * 119.99782 * 2 1 3 25 25 H 1.09000 * 109.47219 * 60.00487 * 1 2 3 26 26 H 1.08994 * 109.47233 * 300.00022 * 1 2 3 27 27 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 28 28 H 0.96694 * 114.00644 * 59.99753 * 3 2 1 29 29 H 1.08998 * 109.47001 * 299.99436 * 4 2 1 30 30 H 1.08990 * 109.47097 * 60.00006 * 4 2 1 31 31 H 1.09003 * 109.46907 * 179.97438 * 5 4 2 32 32 H 1.08997 * 109.47478 * 299.99888 * 5 4 2 33 33 H 0.97000 * 120.00389 * 335.00625 * 8 6 5 34 34 H 1.07993 * 119.28098 * 180.02562 * 11 10 9 35 35 H 1.07990 * 120.18653 * 180.02562 * 12 11 10 36 36 H 1.08006 * 120.85874 * 179.97438 * 13 12 11 37 37 H 0.96997 * 120.00259 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.47131 * 180.02562 * 23 6 5 39 39 H 1.08998 * 109.46651 * 300.00287 * 23 6 5 40 40 H 1.08994 * 109.47339 * 300.00131 * 24 2 1 41 41 H 1.09002 * 109.46976 * 60.00473 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4416 -0.0007 8 7 3.5927 -2.8229 0.0000 9 6 4.2866 -3.8001 0.6860 10 7 5.3912 -3.4867 1.3425 11 6 6.0843 -4.3892 2.0111 12 6 5.6866 -5.7169 2.0592 13 6 4.5426 -6.1109 1.3955 14 6 3.8099 -5.1346 0.6895 15 6 2.6306 -5.4798 -0.0022 16 1 1.8745 -4.7312 -0.1876 17 6 2.4398 -6.7924 -0.4485 18 7 3.4563 -7.6136 -0.5194 19 14 0.7343 -7.3723 -0.9428 20 1 0.5235 -7.1136 -2.3897 21 1 0.6101 -8.8280 -0.6769 22 1 -0.2866 -6.6363 -0.1545 23 6 3.5705 -0.7203 1.2490 24 6 2.0400 -0.7212 1.2493 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 1.8654 0.7649 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.9333 -1.2349 -2.1393 32 1 3.9330 0.3071 -1.2498 33 1 2.7822 -3.0513 -0.4816 34 1 6.9802 -4.0870 2.5328 35 1 6.2689 -6.4384 2.6128 36 1 4.2148 -7.1398 1.4192 37 1 3.3240 -8.5235 -0.8284 38 1 3.9346 -1.2336 2.1389 39 1 3.9334 0.3075 1.2487 40 1 1.6766 -0.2074 2.1392 41 1 1.6767 -1.7489 1.2492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162355092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:29 Heat of formation + Delta-G solvation = -52.985586 kcal Electronic energy + Delta-G solvation = -22254.780786 eV Core-core repulsion = 19132.583479 eV Total energy + Delta-G solvation = -3122.197307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96998 -39.88797 -37.03270 -35.80454 -34.10515 -32.31209 -32.01762 -31.73517 -29.75528 -27.27038 -26.91821 -23.73304 -23.52674 -22.75621 -21.92820 -20.10211 -19.12559 -18.39952 -17.41711 -16.92732 -16.58943 -16.20328 -15.69622 -15.54151 -15.32250 -14.92313 -14.59126 -14.42271 -14.16741 -13.99331 -13.55457 -13.31146 -13.22154 -13.13740 -12.94274 -12.73325 -12.65577 -12.40459 -12.20972 -12.10283 -11.79082 -11.66884 -11.47136 -11.17361 -11.09887 -10.55087 -10.50135 -9.93780 -9.76172 -8.62746 -8.25177 -6.12655 0.95456 1.25962 1.40279 1.50101 1.55637 2.22369 2.81939 2.89226 3.38826 3.75610 3.82465 3.87904 3.99997 4.21694 4.30586 4.34733 4.49522 4.51158 4.62757 4.64893 4.75478 4.81566 4.89372 4.93712 4.99873 5.01946 5.13335 5.18505 5.22529 5.27114 5.30487 5.36392 5.41912 5.46835 5.53899 5.84008 5.94692 6.12676 6.45031 6.79943 6.89230 6.95426 6.99401 7.21165 7.98231 8.40302 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.006683 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.208005 B = 4188.942041 C = 5484.174458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.140 3.860 3 O -0.565 6.565 4 C -0.105 4.105 5 C -0.113 4.113 6 C 0.165 3.835 7 H 0.054 0.946 8 N -0.713 5.713 9 C 0.305 3.695 10 N -0.542 5.542 11 C 0.000 4.000 12 C -0.202 4.202 13 C -0.151 4.151 14 C -0.003 4.003 15 C -0.478 4.478 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.833 5.833 19 Si 0.976 3.024 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.112 4.112 24 C -0.135 4.135 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.387 0.613 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.400 0.600 34 H 0.146 0.854 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.285 0.715 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 11.944 -0.033 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.099 3.901 3 O -0.373 6.373 4 C -0.143 4.143 5 C -0.151 4.151 6 C 0.059 3.941 7 H 0.072 0.928 8 N -0.352 5.352 9 C 0.066 3.934 10 N -0.261 5.261 11 C -0.153 4.153 12 C -0.225 4.225 13 C -0.177 4.177 14 C -0.010 4.010 15 C -0.510 4.510 16 H 0.098 0.902 17 C -0.180 4.180 18 N -0.460 5.460 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.151 4.151 24 C -0.172 4.172 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.236 0.764 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.238 0.762 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.748 12.506 -0.621 13.778 hybrid contribution -1.053 -1.737 0.319 2.056 sum -6.801 10.769 -0.302 12.740 Atomic orbital electron populations 1.22440 0.94751 1.02837 1.03136 1.21020 0.92685 0.82262 0.94126 1.86491 1.77566 1.22953 1.50243 1.21500 0.95522 0.99729 0.97523 1.21654 0.96116 1.00922 0.96426 1.20627 0.97560 0.80941 0.94923 0.92765 1.43965 1.29092 1.05385 1.56771 1.18752 0.90840 0.88295 0.95519 1.66688 1.08252 1.38111 1.13008 1.21904 1.00730 0.89419 1.03276 1.21618 0.99324 0.97272 1.04263 1.21348 0.97375 0.99592 0.99401 1.18298 0.96030 0.90961 0.95696 1.19345 1.02833 0.95935 1.32843 0.90192 1.26645 1.01723 0.96274 0.93314 1.69886 1.33205 1.07203 1.35725 0.85282 0.77740 0.77937 0.79269 1.18776 1.19778 1.18041 1.21697 0.95809 1.00028 0.97612 1.22103 0.95904 1.00812 0.98420 0.91360 0.91039 0.92040 0.76442 0.91539 0.90306 0.92324 0.89575 0.76180 0.83673 0.86588 0.87464 0.90495 0.94534 0.90431 0.90918 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.81 71.98 0.63 -2.63 16 2 C 0.14 3.14 0.98 -10.79 -0.01 3.13 16 3 O -0.56 -11.69 11.63 -148.98 -1.73 -13.42 16 4 C -0.11 -2.66 4.77 30.60 0.15 -2.51 16 5 C -0.11 -3.22 5.46 30.59 0.17 -3.05 16 6 C 0.17 5.72 2.79 44.99 0.13 5.85 16 7 H 0.05 2.13 7.53 -2.39 -0.02 2.12 16 8 N -0.71 -29.28 4.28 -323.14 -1.38 -30.66 16 9 C 0.31 15.06 7.49 134.05 1.00 16.06 16 10 N -0.54 -26.36 9.17 -191.45 -1.76 -28.11 16 11 C 0.00 -0.02 11.17 84.78 0.95 0.93 16 12 C -0.20 -9.70 10.08 22.32 0.22 -9.48 16 13 C -0.15 -8.07 8.79 22.89 0.20 -7.87 16 14 C 0.00 -0.15 5.59 -21.06 -0.12 -0.26 16 15 C -0.48 -24.60 8.51 23.36 0.20 -24.40 16 16 H 0.08 3.83 6.70 -2.91 -0.02 3.81 16 17 C 0.03 1.68 5.19 85.25 0.44 2.12 16 18 N -0.83 -43.51 10.95 21.83 0.24 -43.27 16 19 Si 0.98 37.33 29.59 68.60 2.03 39.36 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 23 C -0.11 -3.50 5.47 30.61 0.17 -3.33 16 24 C -0.13 -3.57 4.76 30.61 0.15 -3.43 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.39 5.14 9.05 -74.06 -0.67 4.47 16 29 H 0.07 1.80 6.51 -2.39 -0.02 1.79 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 2.29 7.68 -2.39 -0.02 2.27 16 33 H 0.40 15.99 5.07 -92.71 -0.47 15.52 16 34 H 0.15 5.73 8.06 -2.91 -0.02 5.71 16 35 H 0.12 4.86 8.06 -2.92 -0.02 4.84 16 36 H 0.11 5.98 6.26 -2.91 -0.02 5.96 16 37 H 0.28 13.57 8.30 -92.71 -0.77 12.80 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 2.15 7.68 -2.39 -0.02 2.13 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.68 7.61 -2.39 -0.02 1.66 16 Total: -1.00 -60.81 322.31 1.58 -59.24 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.10 Total: 45.74 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 4.28 Total: -28.86 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -2.90 Total: -102.05 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -1.73 Total: -13.42 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -60.81 1.58 -59.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162355092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.252 kcal (2) G-P(sol) polarization free energy of solvation -60.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds