Wall clock time and date at job start Mon Mar 30 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38685 * 119.27973 * 2 1 4 4 C 1.38002 * 119.62651 * 180.02562 * 3 2 1 5 5 C 1.41002 * 118.28725 * 359.97438 * 4 3 2 6 6 C 1.41016 * 120.71127 * 180.26690 * 5 4 3 7 7 H 1.07994 * 120.00221 * 158.71632 * 6 5 4 8 8 C 1.39945 * 119.99961 * 338.72513 * 6 5 4 9 9 N 1.30879 * 119.99948 * 341.18743 * 8 6 5 10 10 Si 1.86795 * 120.00288 * 161.19027 * 8 6 5 11 11 H 1.48502 * 109.47423 * 59.99501 * 10 8 6 12 12 H 1.48497 * 109.47477 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47210 * 299.99910 * 10 8 6 14 14 C 1.41708 * 118.58392 * 359.97438 * 5 4 3 15 15 N 1.38095 * 119.90563 * 179.97438 * 14 5 4 16 16 C 1.47893 * 110.99852 * 61.14194 * 15 14 5 17 17 C 1.53998 * 107.05672 * 214.15816 * 16 15 14 18 18 H 1.08998 * 110.30747 * 120.14326 * 17 16 15 19 19 C 1.53004 * 110.30826 * 242.30807 * 17 16 15 20 20 C 1.54591 * 105.13812 * 1.22474 * 17 16 15 21 21 C 1.48530 * 110.99680 * 303.74671 * 15 14 5 22 22 H 1.09001 * 110.67467 * 41.28215 * 21 15 14 23 23 C 1.53003 * 110.66625 * 278.15281 * 21 15 14 24 24 O 1.42898 * 109.47154 * 66.45879 * 23 21 15 25 25 N 1.31965 * 119.27607 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47249 * 269.97818 * 1 2 3 27 27 H 1.09004 * 109.47069 * 29.97382 * 1 2 3 28 28 H 1.08999 * 109.47451 * 149.97340 * 1 2 3 29 29 H 1.08000 * 120.18207 * 0.04956 * 3 2 1 30 30 H 1.08006 * 120.85932 * 180.02562 * 4 3 2 31 31 H 0.96998 * 119.99954 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.91656 * 333.50588 * 16 15 14 33 33 H 1.09000 * 109.91811 * 94.60684 * 16 15 14 34 34 H 1.08999 * 109.46788 * 58.54425 * 19 17 16 35 35 H 1.08997 * 109.47031 * 178.54286 * 19 17 16 36 36 H 1.09005 * 109.46869 * 298.54771 * 19 17 16 37 37 H 1.09005 * 110.72629 * 140.31938 * 20 17 16 38 38 H 1.09001 * 110.72414 * 263.42120 * 20 17 16 39 39 H 1.09006 * 109.47327 * 186.45912 * 23 21 15 40 40 H 1.09000 * 109.47061 * 306.45674 * 23 21 15 41 41 H 0.96704 * 114.00287 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2180 -0.0005 5 6 4.2409 -0.0196 -0.0005 6 6 5.6501 -0.0707 0.0046 7 1 6.1569 -0.9618 0.3442 8 6 6.3919 1.0335 -0.4302 9 7 5.8256 1.9515 -1.1713 10 14 8.1905 1.1970 0.0471 11 1 8.9482 0.0294 -0.4705 12 1 8.7459 2.4447 -0.5358 13 1 8.3075 1.2464 1.5267 14 6 3.4736 -1.2109 0.0006 15 7 4.1073 -2.4379 0.0001 16 6 4.9439 -2.6028 1.2084 17 6 6.1765 -3.4284 0.7952 18 1 7.0897 -2.8616 0.9767 19 6 6.2105 -4.7520 1.5620 20 6 5.9988 -3.6893 -0.7181 21 6 5.0346 -2.5576 -1.1540 22 1 5.5794 -1.6262 -1.3081 23 6 4.2727 -2.9550 -2.4199 24 8 3.3970 -1.8924 -2.8021 25 7 2.1523 -1.1511 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6365 2.1399 0.0008 30 1 4.1136 2.1485 -0.0001 31 1 6.3398 2.7167 -1.4730 32 1 5.2579 -1.6269 1.5787 33 1 4.3823 -3.1294 1.9800 34 1 5.2972 -5.3119 1.3609 35 1 7.0729 -5.3360 1.2406 36 1 6.2855 -4.5509 2.6307 37 1 6.9527 -3.6052 -1.2387 38 1 5.5518 -4.6684 -0.8908 39 1 4.9817 -3.1489 -3.2249 40 1 3.6890 -3.8547 -2.2253 41 1 2.8805 -2.0757 -3.5988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164154587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:22 Heat of formation + Delta-G solvation = -7.824329 kcal Electronic energy + Delta-G solvation = -22962.988945 eV Core-core repulsion = 19842.749977 eV Total energy + Delta-G solvation = -3120.238968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72547 -37.46387 -35.68859 -34.21430 -32.91095 -30.70815 -30.38587 -29.11656 -27.58577 -25.92833 -24.56405 -23.49304 -21.09756 -20.85401 -19.73155 -19.04143 -17.47182 -16.54115 -16.06593 -15.55878 -14.75200 -14.44981 -14.11452 -13.85724 -13.36107 -13.10477 -12.86088 -12.69147 -12.57172 -12.28253 -11.96797 -11.76948 -11.60442 -11.50853 -11.18794 -11.07967 -10.94647 -10.83098 -10.60255 -10.44571 -10.32362 -10.25892 -9.99624 -9.71524 -9.31202 -9.17564 -8.25046 -8.00216 -7.32635 -7.16436 -6.72921 -4.40458 2.64476 2.96442 2.97481 3.01556 3.25712 3.80815 4.55089 4.75553 4.84441 5.18837 5.31682 5.44937 5.62294 5.81107 5.88813 5.98094 5.99800 6.06198 6.14298 6.17214 6.20264 6.26114 6.33583 6.42937 6.47283 6.51066 6.54822 6.64903 6.68693 6.72638 6.85047 7.01301 7.13855 7.15351 7.27494 7.67095 7.83334 7.89134 8.01934 8.20850 8.39730 8.56563 8.66815 8.97702 9.91956 10.04445 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.010539 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.455327 B = 2656.073416 C = 3939.770973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.003 4.003 3 C -0.152 4.152 4 C -0.137 4.137 5 C 0.049 3.951 6 C -0.461 4.461 7 H 0.093 0.907 8 C 0.078 3.922 9 N -0.781 5.781 10 Si 0.901 3.099 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.191 3.809 15 N -0.447 5.447 16 C 0.041 3.959 17 C -0.100 4.100 18 H 0.072 0.928 19 C -0.137 4.137 20 C -0.110 4.110 21 C 0.052 3.948 22 H 0.109 0.891 23 C 0.099 3.901 24 O -0.545 6.545 25 N -0.439 5.439 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.282 0.718 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -6.128 -0.009 6.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.142 4.142 3 C -0.172 4.172 4 C -0.163 4.163 5 C 0.042 3.958 6 C -0.490 4.490 7 H 0.110 0.890 8 C -0.142 4.142 9 N -0.405 5.405 10 Si 0.725 3.275 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.186 1.186 14 C -0.043 4.043 15 N -0.169 5.169 16 C -0.087 4.087 17 C -0.119 4.119 18 H 0.090 0.910 19 C -0.194 4.194 20 C -0.148 4.148 21 C -0.056 4.056 22 H 0.126 0.874 23 C 0.020 3.980 24 O -0.347 6.347 25 N -0.148 5.148 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.418 -6.775 0.375 6.932 hybrid contribution 1.690 1.439 -0.436 2.262 sum 3.109 -5.337 -0.061 6.176 Atomic orbital electron populations 1.20251 0.91875 1.00671 1.00093 1.20092 0.94521 0.88248 1.11385 1.21412 0.95388 0.96884 1.03541 1.21597 0.92376 0.98782 1.03529 1.18783 0.94219 0.92217 0.90560 1.19669 0.91198 1.00417 1.37732 0.88954 1.25950 1.00898 0.94864 0.92476 1.69845 1.38643 1.09131 1.22869 0.86465 0.81970 0.78770 0.80316 1.18732 1.20170 1.18630 1.19083 0.88350 0.87332 1.09505 1.60928 1.24931 1.30107 1.00884 1.23015 0.92263 0.99874 0.93510 1.21925 0.98528 0.96362 0.95098 0.90951 1.21804 1.01349 0.96710 0.99583 1.22462 0.98516 0.98533 0.95287 1.23135 0.92493 0.99998 0.89962 0.87384 1.21999 0.91506 0.89560 0.94916 1.86803 1.58302 1.41890 1.47743 1.66319 1.09802 1.28929 1.09758 0.93491 0.93163 0.92706 0.88817 0.85683 0.90681 0.91464 0.91791 0.92412 0.93246 0.92995 0.91699 0.91421 0.94982 0.94314 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.15 36.00 0.37 -1.01 16 2 C 0.00 -0.07 6.79 -82.37 -0.56 -0.63 16 3 C -0.15 -3.71 9.69 -39.50 -0.38 -4.09 16 4 C -0.14 -3.60 8.83 -38.62 -0.34 -3.94 16 5 C 0.05 1.29 5.09 -106.47 -0.54 0.75 16 6 C -0.46 -11.47 5.42 -37.89 -0.21 -11.68 16 7 H 0.09 2.17 3.71 -52.49 -0.19 1.98 16 8 C 0.08 1.86 5.17 -17.32 -0.09 1.77 16 9 N -0.78 -19.56 10.84 55.55 0.60 -18.96 16 10 Si 0.90 17.89 29.60 -169.99 -5.03 12.86 16 11 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 12 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 13 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 14 C 0.19 4.87 4.64 -155.02 -0.72 4.15 16 15 N -0.45 -10.04 5.05 -161.32 -0.81 -10.85 16 16 C 0.04 0.81 5.44 -2.76 -0.01 0.80 16 17 C -0.10 -1.63 3.02 -89.26 -0.27 -1.90 16 18 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 19 C -0.14 -1.82 8.89 37.16 0.33 -1.49 16 20 C -0.11 -1.80 6.04 -24.88 -0.15 -1.95 16 21 C 0.05 1.06 2.16 -65.79 -0.14 0.92 16 22 H 0.11 2.58 4.75 -51.93 -0.25 2.33 16 23 C 0.10 1.86 6.75 37.16 0.25 2.11 16 24 O -0.55 -11.64 12.47 -35.23 -0.44 -12.08 16 25 N -0.44 -11.35 10.28 -8.11 -0.08 -11.43 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.13 3.34 6.06 -52.48 -0.32 3.02 16 31 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 32 H 0.07 1.48 5.25 -51.93 -0.27 1.21 16 33 H 0.06 1.23 7.69 -51.93 -0.40 0.83 16 34 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.02 7.77 -51.93 -0.40 0.61 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.36 5.79 9.12 45.56 0.42 6.21 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -29.91 319.38 -8.61 -38.52 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.18 Total: 13.31 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.47 Total: -16.17 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.29 Total: -41.25 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.44 Total: -12.08 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.91 -8.61 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164154587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.693 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds