Wall clock time and date at job start Mon Mar 30 2020 01:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38685 * 119.27973 * 2 1 4 4 C 1.38002 * 119.62651 * 180.02562 * 3 2 1 5 5 C 1.41002 * 118.28725 * 359.97438 * 4 3 2 6 6 C 1.41016 * 120.71127 * 180.26690 * 5 4 3 7 7 H 1.07994 * 120.00221 * 158.71632 * 6 5 4 8 8 C 1.39945 * 119.99961 * 338.72513 * 6 5 4 9 9 N 1.30879 * 119.99948 * 341.18743 * 8 6 5 10 10 Si 1.86795 * 120.00288 * 161.19027 * 8 6 5 11 11 H 1.48502 * 109.47423 * 59.99501 * 10 8 6 12 12 H 1.48497 * 109.47477 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47210 * 299.99910 * 10 8 6 14 14 C 1.41708 * 118.58392 * 359.97438 * 5 4 3 15 15 N 1.38095 * 119.90563 * 179.97438 * 14 5 4 16 16 C 1.47893 * 110.99852 * 61.14194 * 15 14 5 17 17 C 1.53998 * 107.05672 * 214.15816 * 16 15 14 18 18 H 1.08998 * 110.30747 * 120.14326 * 17 16 15 19 19 C 1.53004 * 110.30826 * 242.30807 * 17 16 15 20 20 C 1.54591 * 105.13812 * 1.22474 * 17 16 15 21 21 C 1.48530 * 110.99680 * 303.74671 * 15 14 5 22 22 H 1.09001 * 110.67467 * 41.28215 * 21 15 14 23 23 C 1.53003 * 110.66625 * 278.15281 * 21 15 14 24 24 O 1.42898 * 109.47154 * 66.45879 * 23 21 15 25 25 N 1.31965 * 119.27607 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47249 * 269.97818 * 1 2 3 27 27 H 1.09004 * 109.47069 * 29.97382 * 1 2 3 28 28 H 1.08999 * 109.47451 * 149.97340 * 1 2 3 29 29 H 1.08000 * 120.18207 * 0.04956 * 3 2 1 30 30 H 1.08006 * 120.85932 * 180.02562 * 4 3 2 31 31 H 0.96998 * 119.99954 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.91656 * 333.50588 * 16 15 14 33 33 H 1.09000 * 109.91811 * 94.60684 * 16 15 14 34 34 H 1.08999 * 109.46788 * 58.54425 * 19 17 16 35 35 H 1.08997 * 109.47031 * 178.54286 * 19 17 16 36 36 H 1.09005 * 109.46869 * 298.54771 * 19 17 16 37 37 H 1.09005 * 110.72629 * 140.31938 * 20 17 16 38 38 H 1.09001 * 110.72414 * 263.42120 * 20 17 16 39 39 H 1.09006 * 109.47327 * 186.45912 * 23 21 15 40 40 H 1.09000 * 109.47061 * 306.45674 * 23 21 15 41 41 H 0.96704 * 114.00287 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2180 -0.0005 5 6 4.2409 -0.0196 -0.0005 6 6 5.6501 -0.0707 0.0046 7 1 6.1569 -0.9618 0.3442 8 6 6.3919 1.0335 -0.4302 9 7 5.8256 1.9515 -1.1713 10 14 8.1905 1.1970 0.0471 11 1 8.9482 0.0294 -0.4705 12 1 8.7459 2.4447 -0.5358 13 1 8.3075 1.2464 1.5267 14 6 3.4736 -1.2109 0.0006 15 7 4.1073 -2.4379 0.0001 16 6 4.9439 -2.6028 1.2084 17 6 6.1765 -3.4284 0.7952 18 1 7.0897 -2.8616 0.9767 19 6 6.2105 -4.7520 1.5620 20 6 5.9988 -3.6893 -0.7181 21 6 5.0346 -2.5576 -1.1540 22 1 5.5794 -1.6262 -1.3081 23 6 4.2727 -2.9550 -2.4199 24 8 3.3970 -1.8924 -2.8021 25 7 2.1523 -1.1511 -0.0005 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6365 2.1399 0.0008 30 1 4.1136 2.1485 -0.0001 31 1 6.3398 2.7167 -1.4730 32 1 5.2579 -1.6269 1.5787 33 1 4.3823 -3.1294 1.9800 34 1 5.2972 -5.3119 1.3609 35 1 7.0729 -5.3360 1.2406 36 1 6.2855 -4.5509 2.6307 37 1 6.9527 -3.6052 -1.2387 38 1 5.5518 -4.6684 -0.8908 39 1 4.9817 -3.1489 -3.2249 40 1 3.6890 -3.8547 -2.2253 41 1 2.8805 -2.0757 -3.5988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164154587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:21 Heat of formation + Delta-G solvation = -28.721062 kcal Electronic energy + Delta-G solvation = -22963.895096 eV Core-core repulsion = 19842.749977 eV Total energy + Delta-G solvation = -3121.145118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40754 -39.18218 -37.25493 -36.03412 -34.46173 -32.52849 -31.97450 -30.75210 -29.40686 -27.24328 -26.14598 -25.18348 -22.88619 -22.67295 -21.15768 -20.62584 -19.32441 -18.12038 -17.72561 -17.30367 -16.39778 -16.17753 -15.70770 -15.41074 -14.96662 -14.78281 -14.33833 -14.18732 -14.06469 -13.84759 -13.56291 -13.32712 -13.16333 -13.09743 -12.83035 -12.59923 -12.53754 -12.50088 -12.15316 -11.99611 -11.74081 -11.58858 -11.49901 -11.35750 -11.02722 -10.76385 -10.11205 -9.95009 -9.18342 -8.97184 -8.54939 -6.29182 0.81899 1.15065 1.33958 1.44092 1.52328 2.13901 2.72259 3.14085 3.45310 3.63906 3.94901 3.99295 4.14709 4.39968 4.45513 4.49045 4.61501 4.64472 4.67485 4.71936 4.77948 4.81431 4.83600 4.92410 4.98773 5.04315 5.06865 5.14318 5.18824 5.26267 5.31151 5.34089 5.41748 5.48250 5.58674 5.78942 6.00948 6.12027 6.23586 6.35200 6.68110 6.79020 7.05691 7.11040 8.01195 8.25672 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.010539 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.455327 B = 2656.073416 C = 3939.770973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.018 4.018 3 C -0.161 4.161 4 C -0.168 4.168 5 C 0.022 3.978 6 C -0.471 4.471 7 H 0.101 0.899 8 C 0.036 3.964 9 N -0.814 5.814 10 Si 0.969 3.031 11 H -0.250 1.250 12 H -0.271 1.271 13 H -0.260 1.260 14 C 0.188 3.812 15 N -0.455 5.455 16 C 0.039 3.961 17 C -0.095 4.095 18 H 0.074 0.926 19 C -0.129 4.129 20 C -0.099 4.099 21 C 0.044 3.956 22 H 0.072 0.928 23 C 0.097 3.903 24 O -0.582 6.582 25 N -0.462 5.462 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.288 0.712 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -7.773 0.041 8.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.157 4.157 3 C -0.181 4.181 4 C -0.194 4.194 5 C 0.015 3.985 6 C -0.500 4.500 7 H 0.119 0.881 8 C -0.180 4.180 9 N -0.439 5.439 10 Si 0.789 3.211 11 H -0.173 1.173 12 H -0.195 1.195 13 H -0.184 1.184 14 C -0.046 4.046 15 N -0.176 5.176 16 C -0.088 4.088 17 C -0.114 4.114 18 H 0.092 0.908 19 C -0.187 4.187 20 C -0.137 4.137 21 C -0.064 4.064 22 H 0.090 0.910 23 C 0.020 3.980 24 O -0.387 6.387 25 N -0.172 5.172 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.551 -8.432 0.413 8.819 hybrid contribution 1.255 1.959 -0.481 2.375 sum 3.806 -6.474 -0.067 7.510 Atomic orbital electron populations 1.20278 0.88485 1.01870 1.01541 1.20857 0.96880 0.87747 1.10205 1.21683 0.94943 0.98254 1.03202 1.21673 0.93491 0.98572 1.05660 1.19128 0.95352 0.92610 0.91430 1.19895 0.91004 1.01331 1.37759 0.88117 1.26813 1.05260 0.94099 0.91828 1.69917 1.40533 1.09765 1.23692 0.85425 0.76486 0.79273 0.79874 1.17333 1.19537 1.18415 1.19418 0.88503 0.88290 1.08395 1.61072 1.25835 1.28308 1.02418 1.23054 0.93712 0.99190 0.92864 1.21925 0.96469 0.97411 0.95553 0.90789 1.21744 1.02389 0.94931 0.99590 1.22478 0.98443 0.97691 0.95127 1.23212 0.92888 1.00091 0.90195 0.91027 1.22123 0.91798 0.89004 0.95117 1.86756 1.59244 1.43515 1.49178 1.66453 1.10170 1.29755 1.10797 0.91797 0.90936 0.92497 0.86530 0.87054 0.90160 0.94279 0.91650 0.92568 0.90765 0.92311 0.89691 0.89505 0.92173 0.93435 0.77514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.40 10.15 71.23 0.72 -1.67 16 2 C -0.02 -0.87 6.79 42.64 0.29 -0.58 16 3 C -0.16 -8.01 9.69 22.32 0.22 -7.79 16 4 C -0.17 -9.21 8.83 22.89 0.20 -9.00 16 5 C 0.02 1.19 5.09 -21.06 -0.11 1.08 16 6 C -0.47 -24.07 5.42 23.37 0.13 -23.94 16 7 H 0.10 4.82 3.71 -2.91 -0.01 4.81 16 8 C 0.04 1.78 5.17 85.25 0.44 2.22 16 9 N -0.81 -42.02 10.84 21.83 0.24 -41.78 16 10 Si 0.97 36.56 29.60 68.60 2.03 38.59 16 11 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 12 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 13 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 14 C 0.19 9.82 4.64 134.05 0.62 10.44 16 15 N -0.45 -20.49 5.05 -664.29 -3.35 -23.84 16 16 C 0.04 1.56 5.44 86.45 0.47 2.03 16 17 C -0.09 -2.89 3.02 -9.91 -0.03 -2.92 16 18 H 0.07 2.24 7.85 -2.39 -0.02 2.22 16 19 C -0.13 -3.01 8.89 71.98 0.64 -2.37 16 20 C -0.10 -3.00 6.04 31.80 0.19 -2.80 16 21 C 0.04 1.77 2.16 45.26 0.10 1.87 16 22 H 0.07 3.46 4.75 -2.39 -0.01 3.45 16 23 C 0.10 3.57 6.75 71.98 0.49 4.06 16 24 O -0.58 -24.98 12.47 -148.98 -1.86 -26.84 16 25 N -0.46 -24.26 10.28 -179.57 -1.85 -26.11 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 30 H 0.11 6.28 6.06 -2.91 -0.02 6.26 16 31 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 32 H 0.04 1.77 5.25 -2.39 -0.01 1.75 16 33 H 0.07 2.51 7.69 -2.39 -0.02 2.50 16 34 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.09 2.30 7.77 -2.39 -0.02 2.28 16 39 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.38 12.17 9.12 -74.05 -0.68 11.50 16 Total: -1.00 -66.85 319.38 -0.05 -66.90 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: 0.37 Total: 42.47 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.37 Total: -29.39 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -4.96 Total: -91.73 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.86 Total: -26.84 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -66.85 -0.05 -66.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164154587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.179 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds