Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47024 * 2 1 4 4 C 1.38255 * 119.99697 * 266.02913 * 3 2 1 5 5 C 1.38215 * 119.99758 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99924 * 359.95362 * 5 4 3 7 7 C 1.38217 * 120.00261 * 0.02562 * 6 5 4 8 8 C 1.38209 * 120.00124 * 85.76345 * 3 2 1 9 9 C 1.50704 * 119.99807 * 359.97438 * 8 3 2 10 10 H 1.08998 * 109.47276 * 316.39864 * 9 8 3 11 11 C 1.53007 * 109.47054 * 196.39829 * 9 8 3 12 12 N 1.46494 * 109.47008 * 181.75745 * 11 9 8 13 13 C 1.34776 * 119.99784 * 180.02562 * 12 11 9 14 14 C 1.50700 * 120.00113 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00393 * 359.97438 * 13 12 11 16 16 N 1.46502 * 109.47245 * 76.39876 * 9 8 3 17 17 C 1.36934 * 120.00280 * 210.62877 * 16 9 8 18 18 H 1.08005 * 119.99493 * 0.02562 * 17 16 9 19 19 C 1.38801 * 120.00252 * 179.97438 * 17 16 9 20 20 N 1.31627 * 120.00230 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00140 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46969 * 89.99834 * 21 19 17 23 23 H 1.48503 * 109.47117 * 210.00132 * 21 19 17 24 24 H 1.48497 * 109.46941 * 329.99781 * 21 19 17 25 25 H 1.09010 * 109.46981 * 295.12538 * 1 2 3 26 26 H 1.08997 * 109.47104 * 55.11929 * 1 2 3 27 27 H 1.08999 * 109.47653 * 175.12437 * 1 2 3 28 28 H 1.09005 * 109.46856 * 119.99967 * 2 1 3 29 29 H 1.09003 * 109.46950 * 239.99812 * 2 1 3 30 30 H 1.08000 * 120.00262 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.99939 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.99986 * 180.02562 * 6 5 4 33 33 H 1.07994 * 120.00043 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47148 * 301.75400 * 11 9 8 35 35 H 1.09000 * 109.46885 * 61.75516 * 11 9 8 36 36 H 0.97001 * 120.00618 * 359.97438 * 12 11 9 37 37 H 1.09005 * 109.47454 * 59.99762 * 14 13 12 38 38 H 1.09001 * 109.47615 * 179.97438 * 14 13 12 39 39 H 1.08996 * 109.47314 * 299.99922 * 14 13 12 40 40 H 0.97004 * 120.00064 * 30.63356 * 16 9 8 41 41 H 0.96999 * 120.00201 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3409 2.0449 -1.1945 5 6 2.8021 3.3478 -1.1945 6 6 2.9539 4.0274 0.0000 7 6 2.6450 3.4036 1.1941 8 6 2.1793 2.1019 1.1936 9 6 1.8367 1.4238 2.4952 10 1 0.8988 0.8794 2.3854 11 6 1.6895 2.4767 3.5955 12 7 1.3978 1.8144 4.8692 13 6 1.2261 2.5482 5.9865 14 6 0.9255 1.8670 7.2967 15 8 1.3136 3.7569 5.9377 16 7 2.9052 0.4881 2.8544 17 6 2.6127 -0.6452 3.5652 18 1 1.5941 -0.8494 3.8606 19 6 3.6250 -1.5319 3.9052 20 7 3.3438 -2.6210 4.5889 21 14 5.3866 -1.1790 3.3936 22 1 6.0614 -0.3893 4.4548 23 1 6.1103 -2.4604 3.1942 24 1 5.3885 -0.4070 2.1251 25 1 -0.3633 0.4364 0.9305 26 1 -0.3633 0.5877 -0.8430 27 1 -0.3634 -1.0239 -0.0873 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.2224 1.5141 -2.1275 31 1 3.0435 3.8352 -2.1274 32 1 3.3139 5.0456 0.0000 33 1 2.7632 3.9346 2.1270 34 1 2.6173 3.0419 3.6841 35 1 0.8738 3.1543 3.3432 36 1 1.3274 0.8477 4.9084 37 1 1.7410 1.1894 7.5495 38 1 0.8207 2.6171 8.0807 39 1 -0.0022 1.3018 7.2079 40 1 3.8200 0.6714 2.5889 41 1 4.0512 -3.2409 4.8261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733512994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -12.145686 kcal Electronic energy + Delta-G solvation = -21988.329160 eV Core-core repulsion = 18867.902804 eV Total energy + Delta-G solvation = -3120.426356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75022 -38.81417 -36.03736 -33.91856 -33.19841 -32.21466 -30.37576 -29.67185 -29.08610 -26.95253 -23.98248 -23.44978 -22.53978 -20.67106 -20.25470 -19.63064 -17.86540 -16.40302 -16.16630 -15.60000 -15.39940 -14.95891 -14.67926 -14.55833 -13.94742 -13.42754 -13.30299 -13.17314 -12.89582 -12.72508 -12.68191 -12.46074 -12.10630 -11.98221 -11.75709 -11.49707 -11.27870 -11.21727 -10.98639 -10.81677 -10.44828 -10.32074 -10.12835 -9.75436 -9.40632 -9.11562 -8.58100 -8.41286 -8.32041 -7.46342 -5.96052 -3.32527 1.60651 1.65530 3.15889 3.29516 3.34781 3.38738 3.86865 4.00382 4.45483 5.03401 5.09093 5.17673 5.22631 5.31023 5.34620 5.42649 5.49849 5.57273 5.64272 5.72448 5.74186 5.78721 5.83575 5.86270 5.95177 6.14011 6.17855 6.24519 6.29627 6.32243 6.38369 6.57537 6.69379 6.73649 6.82550 7.04520 7.11252 7.28658 7.73655 8.19342 8.22371 8.79908 8.99971 9.73571 9.94052 11.20392 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.008119 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.419871 B = 3447.985063 C = 4755.032517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.054 4.054 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.131 4.131 7 C -0.114 4.114 8 C -0.081 4.081 9 C 0.205 3.795 10 H 0.079 0.921 11 C 0.101 3.899 12 N -0.706 5.706 13 C 0.505 3.495 14 C -0.173 4.173 15 O -0.573 6.573 16 N -0.737 5.737 17 C -0.256 4.256 18 H 0.093 0.907 19 C 0.018 3.982 20 N -0.924 5.924 21 Si 0.880 3.120 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.275 1.275 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.416 0.584 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.365 0.635 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 7.651 -7.020 11.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.055 4.055 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.150 4.150 7 C -0.133 4.133 8 C -0.083 4.083 9 C 0.095 3.905 10 H 0.097 0.903 11 C -0.026 4.026 12 N -0.359 5.359 13 C 0.291 3.709 14 C -0.233 4.233 15 O -0.454 6.454 16 N -0.379 5.379 17 C -0.385 4.385 18 H 0.111 0.889 19 C -0.180 4.180 20 N -0.570 5.570 21 Si 0.710 3.290 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.201 1.201 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.255 0.745 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.199 0.801 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.424 8.236 -6.915 11.629 hybrid contribution 1.488 -0.263 -0.377 1.558 sum -2.936 7.973 -7.292 11.197 Atomic orbital electron populations 1.21681 0.95193 1.01373 1.01472 1.20744 0.95782 0.92668 1.04610 1.19795 0.97373 0.96164 0.92156 1.20997 1.00916 0.95113 0.97393 1.21035 1.00529 0.94968 0.97723 1.21049 1.01504 0.99733 0.92666 1.21257 0.98837 0.94865 0.98309 1.20053 0.99303 0.93871 0.95059 1.19366 0.93883 0.89602 0.87642 0.90325 1.22188 0.99774 0.96044 0.84639 1.46114 1.70169 1.12007 1.07634 1.20753 0.76463 0.87458 0.86179 1.21874 1.03949 1.02394 0.95050 1.90639 1.52991 1.14791 1.86957 1.42787 1.04722 1.23957 1.66478 1.18924 0.95656 0.96655 1.27266 0.88932 1.24616 0.97429 0.96392 0.99569 1.69686 1.32343 1.12339 1.42615 0.86622 0.86437 0.77251 0.78709 1.21027 1.21758 1.20076 0.92541 0.93477 0.92536 0.87488 0.91993 0.86582 0.86740 0.86604 0.85678 0.92222 0.92663 0.74469 0.89198 0.89769 0.89753 0.80148 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.80 37.16 0.36 -1.52 16 2 C -0.10 -1.55 5.42 -27.88 -0.15 -1.70 16 3 C -0.05 -0.85 5.13 -104.62 -0.54 -1.38 16 4 C -0.13 -1.75 9.69 -39.58 -0.38 -2.13 16 5 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 6 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 7 C -0.11 -1.73 9.11 -39.58 -0.36 -2.09 16 8 C -0.08 -1.33 5.27 -104.62 -0.55 -1.88 16 9 C 0.20 3.61 1.96 -69.08 -0.14 3.47 16 10 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 11 C 0.10 1.77 4.27 -4.04 -0.02 1.76 16 12 N -0.71 -12.71 5.38 -60.29 -0.32 -13.04 16 13 C 0.50 9.09 7.94 -10.99 -0.09 9.00 16 14 C -0.17 -2.39 10.32 36.01 0.37 -2.02 16 15 O -0.57 -12.14 17.09 5.56 0.09 -12.04 16 16 N -0.74 -15.35 3.92 -54.55 -0.21 -15.56 16 17 C -0.26 -6.12 8.52 -15.06 -0.13 -6.25 16 18 H 0.09 2.31 7.34 -52.48 -0.39 1.92 16 19 C 0.02 0.46 5.50 -17.43 -0.10 0.37 16 20 N -0.92 -26.20 13.97 55.49 0.78 -25.42 16 21 Si 0.88 20.90 27.74 -169.99 -4.71 16.19 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.27 -6.31 6.52 56.52 0.37 -5.94 16 25 H 0.06 0.78 6.70 -51.92 -0.35 0.43 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.11 1.98 6.11 -51.93 -0.32 1.66 16 29 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 1.85 5.92 -52.49 -0.31 1.54 16 34 H 0.06 1.11 6.68 -51.93 -0.35 0.76 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.42 7.71 6.05 -40.82 -0.25 7.46 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.37 8.00 5.71 -40.82 -0.23 7.76 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -29.23 331.67 -7.78 -37.01 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -5.89 Total: 16.41 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.51 Total: -8.55 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.24 Total: -54.02 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.23 -7.78 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733512994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.868 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds