Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47024 * 2 1 4 4 C 1.38255 * 119.99697 * 266.02913 * 3 2 1 5 5 C 1.38215 * 119.99758 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99924 * 359.95362 * 5 4 3 7 7 C 1.38217 * 120.00261 * 0.02562 * 6 5 4 8 8 C 1.38209 * 120.00124 * 85.76345 * 3 2 1 9 9 C 1.50704 * 119.99807 * 359.97438 * 8 3 2 10 10 H 1.08998 * 109.47276 * 316.39864 * 9 8 3 11 11 C 1.53007 * 109.47054 * 196.39829 * 9 8 3 12 12 N 1.46494 * 109.47008 * 181.75745 * 11 9 8 13 13 C 1.34776 * 119.99784 * 180.02562 * 12 11 9 14 14 C 1.50700 * 120.00113 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00393 * 359.97438 * 13 12 11 16 16 N 1.46502 * 109.47245 * 76.39876 * 9 8 3 17 17 C 1.36934 * 120.00280 * 210.62877 * 16 9 8 18 18 H 1.08005 * 119.99493 * 0.02562 * 17 16 9 19 19 C 1.38801 * 120.00252 * 179.97438 * 17 16 9 20 20 N 1.31627 * 120.00230 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00140 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46969 * 89.99834 * 21 19 17 23 23 H 1.48503 * 109.47117 * 210.00132 * 21 19 17 24 24 H 1.48497 * 109.46941 * 329.99781 * 21 19 17 25 25 H 1.09010 * 109.46981 * 295.12538 * 1 2 3 26 26 H 1.08997 * 109.47104 * 55.11929 * 1 2 3 27 27 H 1.08999 * 109.47653 * 175.12437 * 1 2 3 28 28 H 1.09005 * 109.46856 * 119.99967 * 2 1 3 29 29 H 1.09003 * 109.46950 * 239.99812 * 2 1 3 30 30 H 1.08000 * 120.00262 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.99939 * 179.97438 * 5 4 3 32 32 H 1.08000 * 119.99986 * 180.02562 * 6 5 4 33 33 H 1.07994 * 120.00043 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47148 * 301.75400 * 11 9 8 35 35 H 1.09000 * 109.46885 * 61.75516 * 11 9 8 36 36 H 0.97001 * 120.00618 * 359.97438 * 12 11 9 37 37 H 1.09005 * 109.47454 * 59.99762 * 14 13 12 38 38 H 1.09001 * 109.47615 * 179.97438 * 14 13 12 39 39 H 1.08996 * 109.47314 * 299.99922 * 14 13 12 40 40 H 0.97004 * 120.00064 * 30.63356 * 16 9 8 41 41 H 0.96999 * 120.00201 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3409 2.0449 -1.1945 5 6 2.8021 3.3478 -1.1945 6 6 2.9539 4.0274 0.0000 7 6 2.6450 3.4036 1.1941 8 6 2.1793 2.1019 1.1936 9 6 1.8367 1.4238 2.4952 10 1 0.8988 0.8794 2.3854 11 6 1.6895 2.4767 3.5955 12 7 1.3978 1.8144 4.8692 13 6 1.2261 2.5482 5.9865 14 6 0.9255 1.8670 7.2967 15 8 1.3136 3.7569 5.9377 16 7 2.9052 0.4881 2.8544 17 6 2.6127 -0.6452 3.5652 18 1 1.5941 -0.8494 3.8606 19 6 3.6250 -1.5319 3.9052 20 7 3.3438 -2.6210 4.5889 21 14 5.3866 -1.1790 3.3936 22 1 6.0614 -0.3893 4.4548 23 1 6.1103 -2.4604 3.1942 24 1 5.3885 -0.4070 2.1251 25 1 -0.3633 0.4364 0.9305 26 1 -0.3633 0.5877 -0.8430 27 1 -0.3634 -1.0239 -0.0873 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.2224 1.5141 -2.1275 31 1 3.0435 3.8352 -2.1274 32 1 3.3139 5.0456 0.0000 33 1 2.7632 3.9346 2.1270 34 1 2.6173 3.0419 3.6841 35 1 0.8738 3.1543 3.3432 36 1 1.3274 0.8477 4.9084 37 1 1.7410 1.1894 7.5495 38 1 0.8207 2.6171 8.0807 39 1 -0.0022 1.3018 7.2079 40 1 3.8200 0.6714 2.5889 41 1 4.0512 -3.2409 4.8261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733512994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -29.866755 kcal Electronic energy + Delta-G solvation = -21989.097603 eV Core-core repulsion = 18867.902804 eV Total energy + Delta-G solvation = -3121.194799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02717 -40.20895 -37.54298 -35.19602 -34.78811 -33.79088 -31.97623 -30.90964 -30.21388 -28.32398 -25.58298 -24.59557 -24.03526 -21.91664 -21.69907 -20.94707 -19.67645 -17.77874 -17.50123 -17.03671 -16.80525 -16.30711 -16.14315 -15.97566 -15.43011 -14.87130 -14.57891 -14.46134 -14.30503 -14.23158 -13.94895 -13.86065 -13.26263 -13.22660 -13.08176 -12.91268 -12.84570 -12.58531 -12.53195 -12.16650 -11.92877 -11.76730 -11.67807 -11.36848 -10.99749 -10.88148 -9.93687 -9.70325 -9.47498 -9.30355 -7.98796 -5.30402 0.47678 0.55028 1.38174 1.42051 1.45713 1.71935 2.46245 2.51319 2.86980 3.34863 3.69752 3.85746 3.93585 4.03614 4.07617 4.19270 4.30305 4.36133 4.42627 4.55353 4.59353 4.65346 4.69299 4.71882 4.76038 4.80721 5.00016 5.07982 5.11615 5.18077 5.22103 5.36597 5.50446 5.58496 5.64937 5.67517 5.79804 5.89682 6.18588 6.23458 6.71577 7.07555 7.33954 7.83169 8.03583 9.20469 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.008119 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.419871 B = 3447.985063 C = 4755.032517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.068 4.068 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.132 4.132 7 C -0.125 4.125 8 C -0.102 4.102 9 C 0.213 3.787 10 H 0.075 0.925 11 C 0.106 3.894 12 N -0.709 5.709 13 C 0.498 3.502 14 C -0.165 4.165 15 O -0.607 6.607 16 N -0.737 5.737 17 C -0.214 4.214 18 H 0.081 0.919 19 C -0.041 4.041 20 N -0.968 5.968 21 Si 0.930 3.070 22 H -0.290 1.290 23 H -0.302 1.302 24 H -0.262 1.262 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.413 0.587 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.362 0.638 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 9.202 -8.789 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 C -0.069 4.069 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.150 4.150 7 C -0.143 4.143 8 C -0.103 4.103 9 C 0.105 3.895 10 H 0.093 0.907 11 C -0.020 4.020 12 N -0.361 5.361 13 C 0.287 3.713 14 C -0.225 4.225 15 O -0.490 6.490 16 N -0.379 5.379 17 C -0.344 4.344 18 H 0.098 0.902 19 C -0.234 4.234 20 N -0.619 5.619 21 Si 0.760 3.240 22 H -0.217 1.217 23 H -0.229 1.229 24 H -0.188 1.188 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.252 0.748 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.194 0.806 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.586 9.831 -8.716 13.916 hybrid contribution 1.444 -0.629 0.087 1.577 sum -3.142 9.202 -8.629 13.001 Atomic orbital electron populations 1.21639 0.93935 1.01972 1.01649 1.20662 0.96930 0.92641 1.03324 1.19903 0.98063 0.96187 0.92719 1.21284 1.00202 0.95720 0.97463 1.21436 0.98741 0.94501 0.98839 1.21372 1.00623 1.00874 0.92131 1.21337 0.99229 0.94555 0.99229 1.19923 1.01361 0.94672 0.94391 1.19351 0.92607 0.88923 0.88635 0.90704 1.22081 0.99556 0.95888 0.84523 1.46211 1.70020 1.11816 1.08090 1.21487 0.75434 0.87147 0.87250 1.21884 1.05076 1.02671 0.92829 1.90618 1.54561 1.16316 1.87553 1.42805 1.05457 1.23557 1.66069 1.18916 0.94651 0.96360 1.24501 0.90174 1.25108 1.00236 0.96926 1.01138 1.69803 1.32779 1.13797 1.45475 0.85796 0.83200 0.76369 0.78619 1.21708 1.22950 1.18770 0.93535 0.91788 0.92008 0.91071 0.90880 0.84403 0.83494 0.84117 0.85969 0.93149 0.91945 0.74821 0.88866 0.88438 0.87493 0.80565 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.80 71.98 0.71 -2.75 16 2 C -0.10 -2.92 5.42 29.85 0.16 -2.76 16 3 C -0.07 -2.01 5.13 -19.87 -0.10 -2.11 16 4 C -0.13 -3.15 9.69 22.27 0.22 -2.93 16 5 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 6 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 7 C -0.12 -3.59 9.11 22.27 0.20 -3.39 16 8 C -0.10 -3.23 5.27 -19.87 -0.10 -3.33 16 9 C 0.21 7.47 1.96 44.25 0.09 7.56 16 10 H 0.08 2.68 5.95 -2.39 -0.01 2.66 16 11 C 0.11 3.73 4.27 86.38 0.37 4.10 16 12 N -0.71 -25.44 5.38 -463.06 -2.49 -27.93 16 13 C 0.50 17.68 7.94 87.66 0.70 18.37 16 14 C -0.17 -4.34 10.32 71.24 0.74 -3.60 16 15 O -0.61 -25.56 17.09 -3.03 -0.05 -25.61 16 16 N -0.74 -30.63 3.92 -326.49 -1.28 -31.92 16 17 C -0.21 -10.33 8.52 84.03 0.72 -9.61 16 18 H 0.08 4.06 7.34 -2.91 -0.02 4.04 16 19 C -0.04 -2.18 5.50 84.86 0.47 -1.71 16 20 N -0.97 -56.26 13.97 21.65 0.30 -55.95 16 21 Si 0.93 43.66 27.74 68.60 1.90 45.56 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 24 H -0.26 -11.59 6.52 99.48 0.65 -10.95 16 25 H 0.05 1.26 6.70 -2.38 -0.02 1.25 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 2.63 6.11 -2.38 -0.01 2.62 16 29 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 30 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.12 3.51 5.92 -2.91 -0.02 3.49 16 34 H 0.05 1.87 6.68 -2.39 -0.02 1.85 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.41 15.34 6.05 -92.71 -0.56 14.78 16 37 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.10 2.30 8.12 -2.39 -0.02 2.28 16 39 H 0.11 2.32 8.14 -2.39 -0.02 2.31 16 40 H 0.36 15.65 5.71 -92.71 -0.53 15.12 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -63.15 331.67 2.87 -60.28 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -0.10 Total: 42.99 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 4.60 Total: -7.42 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -3.47 Total: -115.80 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Total: -63.15 2.87 -60.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733512994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.414 kcal (2) G-P(sol) polarization free energy of solvation -63.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds