Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47655 * 2 1 4 4 C 1.50698 * 109.47179 * 120.00380 * 2 1 3 5 5 C 1.38235 * 119.61561 * 273.93268 * 4 2 1 6 6 C 1.38631 * 119.15819 * 179.75557 * 5 4 2 7 7 C 1.38671 * 118.42218 * 0.51087 * 6 5 4 8 8 C 1.38186 * 119.16197 * 359.72701 * 7 6 5 9 9 N 1.31859 * 119.62438 * 94.20484 * 4 2 1 10 10 N 1.46902 * 109.47035 * 239.99953 * 2 1 3 11 11 C 1.47900 * 110.99851 * 62.14139 * 10 2 1 12 12 C 1.53999 * 107.05511 * 145.84495 * 11 10 2 13 13 C 1.54589 * 105.22740 * 358.72904 * 12 11 10 14 14 H 1.09003 * 110.72485 * 96.44780 * 13 12 11 15 15 O 1.42901 * 110.72267 * 219.73240 * 13 12 11 16 16 C 1.42901 * 114.00139 * 268.54752 * 15 13 12 17 17 C 1.50700 * 109.46960 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00637 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99502 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00354 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99637 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46986 * 59.99858 * 21 19 17 23 23 H 1.48498 * 109.46984 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47295 * 300.00078 * 21 19 17 25 25 C 1.48534 * 111.00209 * 179.54271 * 10 2 1 26 26 H 1.08997 * 109.46999 * 59.99681 * 1 2 3 27 27 H 1.09000 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46726 * 299.99582 * 1 2 3 29 29 H 1.07999 * 120.42111 * 359.97438 * 5 4 2 30 30 H 1.07995 * 120.78935 * 180.21515 * 6 5 4 31 31 H 1.08004 * 120.41932 * 179.75797 * 7 6 5 32 32 H 1.08006 * 119.61682 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.91837 * 26.49730 * 11 10 2 34 34 H 1.09000 * 109.92152 * 265.19687 * 11 10 2 35 35 H 1.08999 * 110.30695 * 117.69424 * 12 11 10 36 36 H 1.08998 * 110.30764 * 239.76116 * 12 11 10 37 37 H 1.09008 * 109.47037 * 299.99834 * 16 15 13 38 38 H 1.08995 * 109.47304 * 59.99638 * 16 15 13 39 39 H 0.96994 * 119.99971 * 180.02562 * 20 19 17 40 40 H 1.08993 * 110.66205 * 318.71157 * 25 10 2 41 41 H 1.08994 * 110.67011 * 81.84767 * 25 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1823 -0.0080 2.4115 6 6 2.6403 -0.6722 3.5389 7 6 2.9418 -2.0216 3.4331 8 6 2.7715 -2.6563 2.2175 9 7 2.3288 -1.9937 1.1667 10 7 2.0196 -0.6925 -1.1994 11 6 1.5880 0.0073 -2.4288 12 6 2.7166 -0.1591 -3.4633 13 6 3.8188 -0.9627 -2.7358 14 1 3.7386 -2.0247 -2.9677 15 8 5.1148 -0.4658 -3.0760 16 6 5.7114 -1.1187 -4.1984 17 6 7.0677 -0.5188 -4.4659 18 1 7.4370 0.2813 -3.8417 19 6 7.8372 -0.9915 -5.5079 20 7 7.3878 -1.9662 -6.2678 21 14 9.5181 -0.2474 -5.8399 22 1 10.3828 -0.4252 -4.6458 23 1 10.1387 -0.9269 -7.0055 24 1 9.3694 1.2009 -6.1321 25 6 3.5044 -0.7028 -1.2394 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.9424 1.0440 2.4563 30 1 2.7639 -0.1500 4.4760 31 1 3.3046 -2.5697 4.2900 32 1 3.0037 -3.7072 2.1269 33 1 1.4305 1.0651 -2.2181 34 1 0.6686 -0.4396 -2.8072 35 1 2.3560 -0.7115 -4.3310 36 1 3.0975 0.8157 -3.7677 37 1 5.8206 -2.1820 -3.9844 38 1 5.0765 -0.9878 -5.0747 39 1 7.9293 -2.2989 -7.0005 40 1 3.9043 0.2613 -0.9254 41 1 3.9004 -1.5057 -0.6177 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -25.037053 kcal Electronic energy + Delta-G solvation = -21175.891170 eV Core-core repulsion = 18054.905803 eV Total energy + Delta-G solvation = -3120.985368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39168 -40.05811 -37.99658 -35.16371 -34.44747 -33.26070 -31.28963 -30.28358 -29.74358 -28.17287 -25.26260 -24.59328 -24.35818 -22.90707 -21.84811 -21.07130 -18.68082 -18.14659 -17.72588 -17.39717 -16.70323 -16.52196 -16.32051 -15.65298 -15.58609 -15.11826 -15.02395 -14.80070 -14.35440 -14.16814 -13.92576 -13.67199 -13.22301 -13.12129 -12.98916 -12.89638 -12.61466 -12.46717 -12.42444 -12.35551 -12.15821 -11.99143 -11.51052 -11.30386 -10.88038 -10.71721 -10.23207 -10.17674 -9.86829 -9.38849 -8.34060 -6.47736 0.20963 0.45964 1.38326 1.43588 1.52107 2.31695 2.67261 2.92130 2.99283 3.25543 3.35998 3.64338 3.78680 3.88465 4.05589 4.09632 4.19552 4.22621 4.29468 4.32148 4.35234 4.52822 4.60398 4.66903 4.75387 4.81782 4.86330 4.86897 4.90364 4.97667 5.04972 5.11871 5.17997 5.23217 5.29327 5.31338 5.51882 5.76629 5.88385 5.93085 6.06615 6.50702 6.78157 7.21622 7.24249 8.78184 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022707 B = 0.003714 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.826048 B = 7537.380025 C = 8258.308095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.119 3.881 3 H 0.066 0.934 4 C 0.113 3.887 5 C -0.175 4.175 6 C -0.077 4.077 7 C -0.175 4.175 8 C 0.075 3.925 9 N -0.489 5.489 10 N -0.499 5.499 11 C 0.049 3.951 12 C -0.150 4.150 13 C 0.073 3.927 14 H 0.051 0.949 15 O -0.401 6.401 16 C 0.214 3.786 17 C -0.553 4.553 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.985 3.015 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.264 1.264 25 C 0.067 3.933 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.067 0.933 37 H -0.018 1.018 38 H -0.012 1.012 39 H 0.272 0.728 40 H 0.040 0.960 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.401 4.358 19.090 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.010 3.990 3 H 0.084 0.916 4 C -0.025 4.025 5 C -0.195 4.195 6 C -0.103 4.103 7 C -0.195 4.195 8 C -0.081 4.081 9 N -0.198 5.198 10 N -0.224 5.224 11 C -0.079 4.079 12 C -0.189 4.189 13 C 0.014 3.986 14 H 0.069 0.931 15 O -0.320 6.320 16 C 0.139 3.861 17 C -0.591 4.591 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.189 1.189 25 C -0.061 4.061 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.178 0.822 32 H 0.181 0.819 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.086 0.914 37 H -0.001 1.001 38 H 0.006 0.994 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.603 3.427 18.262 23.633 hybrid contribution 1.206 0.813 0.063 1.456 sum -13.397 4.241 18.325 23.092 Atomic orbital electron populations 1.21755 0.90929 1.02643 1.03400 1.20864 0.97441 0.94196 0.86492 0.91648 1.21287 0.95884 0.90443 0.94900 1.22176 1.01681 1.02357 0.93258 1.21946 0.94473 0.94523 0.99366 1.22479 1.01189 0.96183 0.99639 1.23202 0.95153 1.01024 0.88766 1.67531 1.10698 1.09381 1.32193 1.64701 1.06544 1.49478 1.01698 1.22825 0.97923 0.97958 0.89163 1.22875 0.95983 1.00829 0.99174 1.23010 0.83721 0.96719 0.95187 0.93116 1.87807 1.31164 1.62032 1.51020 1.19825 0.92484 0.90920 0.82887 1.21359 1.01821 1.20522 1.15390 0.92006 1.25989 1.03283 0.95156 0.94663 1.70066 1.39967 1.27665 1.19148 0.85211 0.77208 0.78736 0.78113 1.19027 1.19784 1.18853 1.22851 0.88966 1.00083 0.94224 0.90665 0.92803 0.90156 0.82850 0.81800 0.82223 0.81935 0.91868 0.88536 0.91031 0.91416 1.00076 0.99393 0.91928 0.94209 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.11 71.98 0.66 -1.67 16 2 C 0.12 2.78 2.01 44.17 0.09 2.87 16 3 H 0.07 1.41 7.96 -2.39 -0.02 1.39 16 4 C 0.11 2.76 5.16 42.55 0.22 2.97 16 5 C -0.17 -3.20 9.76 22.36 0.22 -2.99 16 6 C -0.08 -1.18 10.18 22.47 0.23 -0.95 16 7 C -0.18 -2.89 10.11 22.36 0.23 -2.67 16 8 C 0.08 1.69 11.18 84.67 0.95 2.63 16 9 N -0.49 -13.69 8.54 -183.88 -1.57 -15.26 16 10 N -0.50 -14.74 4.76 -861.90 -4.10 -18.84 16 11 C 0.05 1.30 5.45 86.45 0.47 1.77 16 12 C -0.15 -5.23 6.69 31.47 0.21 -5.02 16 13 C 0.07 3.06 3.52 31.86 0.11 3.18 16 14 H 0.05 2.26 7.89 -2.39 -0.02 2.25 16 15 O -0.40 -21.02 10.07 -148.98 -1.50 -22.52 16 16 C 0.21 12.64 5.56 71.24 0.40 13.03 16 17 C -0.55 -34.07 9.43 25.60 0.24 -33.83 16 18 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 19 C 0.01 0.46 5.46 84.66 0.46 0.93 16 20 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 21 Si 0.99 45.10 29.54 68.60 2.03 47.13 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 25 C 0.07 2.42 5.41 86.71 0.47 2.89 16 26 H 0.07 1.17 7.19 -2.39 -0.02 1.16 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 30 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.06 1.44 7.60 -2.39 -0.02 1.42 16 34 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 37 H -0.02 -1.15 8.11 -2.38 -0.02 -1.17 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 41 H 0.07 2.83 7.09 -2.39 -0.02 2.81 16 Total: -1.00 -73.14 337.51 1.07 -72.07 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.99 Total: 11.14 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 4.95 Total: -16.86 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -5.39 Total: -90.96 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -1.50 Total: -22.52 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.14 1.07 -72.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.036 kcal (2) G-P(sol) polarization free energy of solvation -73.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds