Wall clock time and date at job start Mon Mar 30 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35897 * 116.99934 * 2 1 4 4 C 1.38750 * 120.05946 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94795 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05431 * 359.97438 * 5 4 3 7 7 C 1.38249 * 120.11196 * 359.75422 * 6 5 4 8 8 C 1.38159 * 120.05359 * 0.49687 * 7 6 5 9 9 C 1.50702 * 120.02819 * 179.76927 * 8 7 6 10 10 N 1.46898 * 109.47650 * 259.73078 * 9 8 7 11 11 C 1.46900 * 111.00355 * 190.00114 * 10 9 8 12 12 C 1.53235 * 109.34263 * 187.25389 * 11 10 9 13 13 N 1.47086 * 108.51886 * 306.16546 * 12 11 10 14 14 C 1.36930 * 120.88084 * 231.18344 * 13 12 11 15 15 H 1.08003 * 120.00034 * 27.13616 * 14 13 12 16 16 C 1.38810 * 119.99851 * 206.85031 * 14 13 12 17 17 N 1.31624 * 120.00188 * 17.17041 * 16 14 13 18 18 Si 1.86800 * 120.00209 * 197.16621 * 16 14 13 19 19 H 1.48501 * 109.47038 * 90.00165 * 18 16 14 20 20 H 1.48496 * 109.47422 * 210.00457 * 18 16 14 21 21 H 1.48499 * 109.47085 * 330.00676 * 18 16 14 22 22 C 1.47081 * 118.23455 * 51.46100 * 13 12 11 23 23 C 1.46901 * 110.99711 * 314.29968 * 10 9 8 24 24 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47281 * 299.99913 * 1 2 3 26 26 H 1.08991 * 109.47315 * 60.00173 * 1 2 3 27 27 H 1.07997 * 120.02160 * 359.95909 * 4 3 2 28 28 H 1.08000 * 119.97428 * 179.97438 * 5 4 3 29 29 H 1.07997 * 119.94490 * 180.02562 * 6 5 4 30 30 H 1.07995 * 119.97345 * 180.25323 * 7 6 5 31 31 H 1.09004 * 109.46903 * 139.72654 * 9 8 7 32 32 H 1.09001 * 109.47175 * 19.73065 * 9 8 7 33 33 H 1.09002 * 109.49350 * 67.29049 * 11 10 9 34 34 H 1.09006 * 109.50970 * 307.22448 * 11 10 9 35 35 H 1.08998 * 109.62971 * 186.46211 * 12 11 10 36 36 H 1.09003 * 109.79054 * 65.96881 * 12 11 10 37 37 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.63185 * 68.25003 * 22 13 12 39 39 H 1.08998 * 109.62646 * 188.83355 * 22 13 12 40 40 H 1.09000 * 109.49497 * 292.70822 * 23 10 9 41 41 H 1.09005 * 109.49279 * 52.75985 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0016 7 6 4.0560 2.5170 0.0067 8 6 3.4311 1.2848 0.0010 9 6 4.2537 0.0221 0.0013 10 7 4.3200 -0.5196 -1.3625 11 6 4.9076 -1.8660 -1.3663 12 6 5.1259 -2.3204 -2.8133 13 7 3.8528 -2.1955 -3.5393 14 6 3.3500 -3.2444 -4.2618 15 1 3.5981 -4.2586 -3.9857 16 6 2.5165 -3.0043 -5.3456 17 7 2.4735 -1.8068 -5.8902 18 14 1.4560 -4.3807 -6.0313 19 1 0.1423 -4.3852 -5.3390 20 1 1.2482 -4.1677 -7.4862 21 1 2.1345 -5.6836 -5.8138 22 6 3.1374 -0.9121 -3.4737 23 6 2.9945 -0.5150 -1.9957 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2128 2.3203 0.0003 28 1 1.3340 4.5114 0.0011 29 1 3.7922 4.6380 0.0024 30 1 5.1343 2.5751 0.0113 31 1 3.7922 -0.7120 0.6619 32 1 5.2611 0.2448 0.3531 33 1 4.2319 -2.5592 -0.8653 34 1 5.8635 -1.8475 -0.8427 35 1 5.4536 -3.3599 -2.8252 36 1 5.8808 -1.6930 -3.2873 37 1 1.8914 -1.6391 -6.6477 38 1 3.7039 -0.1493 -4.0078 39 1 2.1499 -1.0201 -3.9222 40 1 2.3454 -1.2270 -1.4860 41 1 2.5627 0.4836 -1.9285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049833808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:11 Heat of formation + Delta-G solvation = 31.122539 kcal Electronic energy + Delta-G solvation = -22341.826512 eV Core-core repulsion = 19223.276407 eV Total energy + Delta-G solvation = -3118.550105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41346 -37.74414 -37.21734 -34.48380 -32.02928 -30.51808 -30.03115 -29.65107 -27.48541 -26.79486 -24.54618 -22.75421 -22.34947 -21.87411 -20.79337 -18.94811 -17.87080 -16.70019 -16.15327 -15.93358 -15.56384 -14.83924 -14.44392 -14.37843 -14.12736 -13.81002 -13.53069 -13.32523 -12.98799 -12.81240 -12.47120 -12.36568 -11.84469 -11.66870 -11.38482 -11.13817 -11.04719 -10.90775 -10.75605 -10.66620 -10.34915 -10.08699 -9.95386 -9.64023 -9.45691 -8.80203 -8.42762 -8.10931 -7.50263 -6.56432 -5.70215 -3.11215 1.40377 1.53510 3.40322 3.41306 3.47570 3.49232 3.81078 4.55176 4.74199 4.82594 4.89318 5.08747 5.12704 5.23894 5.38889 5.42976 5.46509 5.57467 5.58074 5.67921 5.77908 5.89041 6.06947 6.10874 6.14126 6.27783 6.36162 6.47072 6.51673 6.61970 6.66420 6.71441 6.86091 6.89273 7.03915 7.37830 7.49617 7.76187 7.78603 7.84131 7.95379 8.51827 9.29351 9.93310 10.52798 11.38152 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.005465 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.612219 B = 5121.891861 C = 5635.879913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.139 3.861 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.162 4.162 7 C -0.067 4.067 8 C -0.106 4.106 9 C 0.100 3.900 10 N -0.527 5.527 11 C 0.046 3.954 12 C 0.149 3.851 13 N -0.595 5.595 14 C -0.248 4.248 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.179 3.821 23 C 0.039 3.961 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.024 0.976 37 H 0.252 0.748 38 H 0.022 0.978 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 8.830 14.368 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.093 3.907 4 C -0.232 4.232 5 C -0.104 4.104 6 C -0.180 4.180 7 C -0.085 4.085 8 C -0.107 4.107 9 C -0.027 4.027 10 N -0.252 5.252 11 C -0.084 4.084 12 C 0.023 3.977 13 N -0.318 5.318 14 C -0.378 4.378 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.549 5.549 18 Si 0.731 3.269 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.053 3.947 23 C -0.090 4.090 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.154 8.942 13.927 16.591 hybrid contribution -1.449 -0.935 0.011 1.724 sum -2.603 8.007 13.938 16.284 Atomic orbital electron populations 1.23027 0.78887 1.03996 1.00946 1.86305 1.21009 1.26404 1.88150 1.18836 0.91949 0.84446 0.95424 1.21168 0.99858 0.92394 1.09755 1.20865 0.94701 0.96738 0.98051 1.20991 0.93882 0.98244 1.04873 1.20865 0.99894 0.90842 0.96944 1.19237 0.90427 0.96041 1.05040 1.20922 0.97850 0.92368 0.91597 1.62164 1.24711 1.22876 1.15427 1.22606 0.97590 0.88413 0.99786 1.20962 0.89409 0.97913 0.89463 1.44147 1.19320 1.11694 1.56685 1.19210 1.25447 0.86807 1.06321 0.91734 1.25012 1.02081 0.96650 0.96093 1.70047 1.40141 1.20965 1.23703 0.86303 0.80874 0.81790 0.77907 1.21625 1.21802 1.20490 1.20974 0.98252 0.86277 0.89230 1.23123 0.88000 0.99449 0.98427 0.88315 0.93141 0.92488 0.85711 0.86193 0.86149 0.85396 0.94446 0.90805 0.95461 0.92227 0.92761 0.95778 0.93751 0.96027 0.89748 0.94450 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.78 6.81 -19.42 -0.13 -4.92 16 3 C 0.14 2.12 4.78 -39.21 -0.19 1.93 16 4 C -0.21 -2.78 9.04 -39.44 -0.36 -3.13 16 5 C -0.09 -1.01 10.04 -39.61 -0.40 -1.41 16 6 C -0.16 -1.93 10.04 -39.56 -0.40 -2.33 16 7 C -0.07 -0.89 9.66 -39.61 -0.38 -1.28 16 8 C -0.11 -1.64 4.57 -104.47 -0.48 -2.12 16 9 C 0.10 1.62 5.25 -4.98 -0.03 1.59 16 10 N -0.53 -10.25 4.77 -235.46 -1.12 -11.38 16 11 C 0.05 0.88 5.58 -3.70 -0.02 0.86 16 12 C 0.15 3.35 6.69 -3.60 -0.02 3.33 16 13 N -0.60 -15.82 3.03 -171.73 -0.52 -16.34 16 14 C -0.25 -7.06 9.63 -15.06 -0.15 -7.21 16 15 H 0.06 1.80 7.88 -52.48 -0.41 1.39 16 16 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 17 N -0.90 -27.05 11.16 55.49 0.62 -26.43 16 18 Si 0.90 22.16 29.59 -169.99 -5.03 17.14 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.18 4.61 5.45 -3.36 -0.02 4.59 16 23 C 0.04 0.83 4.02 -3.46 -0.01 0.82 16 24 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 27 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.48 8.03 -52.49 -0.42 1.06 16 31 H 0.04 0.62 7.79 -51.93 -0.40 0.22 16 32 H 0.07 1.05 8.00 -51.93 -0.42 0.63 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.05 1.16 7.95 -51.93 -0.41 0.75 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 2.39 6.12 -51.93 -0.32 2.07 16 40 H 0.04 0.84 6.68 -51.93 -0.35 0.50 16 41 H 0.06 1.23 5.04 -51.93 -0.26 0.97 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -32.03 320.41 -9.11 -41.14 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.21 Total: -0.90 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.54 Total: -3.15 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -1.02 Total: -54.14 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.13 Total: -4.92 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.03 -9.11 -41.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049833808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.267 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds