Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.50700 * 109.47218 * 240.00042 * 2 1 3 5 5 O 1.21278 * 120.00695 * 240.00139 * 4 2 1 6 6 N 1.34787 * 119.99875 * 59.99760 * 4 2 1 7 7 C 1.46499 * 120.00001 * 180.02562 * 6 4 2 8 8 C 1.50698 * 109.46709 * 180.02562 * 7 6 4 9 9 C 1.38237 * 119.99546 * 269.72427 * 8 7 6 10 10 C 1.38240 * 119.99805 * 179.77162 * 9 8 7 11 11 C 1.38243 * 120.00053 * 0.50460 * 10 9 8 12 12 C 1.38237 * 119.99585 * 359.74910 * 11 10 9 13 13 C 1.38233 * 120.00429 * 90.00106 * 8 7 6 14 14 N 1.46902 * 109.47449 * 120.00521 * 2 1 3 15 15 C 1.46898 * 111.00283 * 58.95014 * 14 2 1 16 16 C 1.46906 * 110.99573 * 294.99873 * 14 2 1 17 17 C 1.50706 * 109.46929 * 190.00042 * 16 14 2 18 18 H 1.07998 * 119.99628 * 0.02562 * 17 16 14 19 19 C 1.37871 * 119.99847 * 179.97438 * 17 16 14 20 20 N 1.31507 * 120.00190 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00193 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47081 * 89.99276 * 21 19 17 23 23 H 1.48499 * 109.47356 * 209.99897 * 21 19 17 24 24 H 1.48503 * 109.46728 * 329.99994 * 21 19 17 25 25 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47107 * 299.99473 * 1 2 3 27 27 H 1.08999 * 109.47381 * 60.00003 * 1 2 3 28 28 H 0.97003 * 119.99350 * 0.02562 * 6 4 2 29 29 H 1.08998 * 109.46848 * 299.99798 * 7 6 4 30 30 H 1.08996 * 109.47271 * 60.00120 * 7 6 4 31 31 H 1.07992 * 120.00722 * 0.02562 * 9 8 7 32 32 H 1.07999 * 120.00281 * 180.23521 * 10 9 8 33 33 H 1.07998 * 120.00134 * 179.73019 * 11 10 9 34 34 H 1.07998 * 119.99822 * 179.97438 * 12 11 10 35 35 H 1.08000 * 120.00038 * 359.97438 * 13 8 7 36 36 H 1.08997 * 109.47334 * 296.05250 * 15 14 2 37 37 H 1.09000 * 109.46674 * 56.05127 * 15 14 2 38 38 H 1.08995 * 109.47296 * 176.04950 * 15 14 2 39 39 H 1.08998 * 109.47121 * 309.99709 * 16 14 2 40 40 H 1.09000 * 109.47141 * 69.99907 * 16 14 2 41 41 H 0.96996 * 120.00773 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4547 7 6 2.1945 -0.9408 -3.6508 8 6 1.6927 -0.2299 -4.8812 9 6 0.4873 -0.5982 -5.4488 10 6 0.0247 0.0570 -6.5747 11 6 0.7724 1.0736 -7.1391 12 6 1.9804 1.4384 -6.5744 13 6 2.4405 0.7866 -5.4455 14 7 2.0197 -0.6926 1.1994 15 6 1.5284 -2.0762 1.2459 16 6 1.6488 0.0391 2.4181 17 6 2.3681 -0.5573 3.6005 18 1 3.0344 -1.3956 3.4606 19 6 2.1762 -0.0320 4.8607 20 7 2.8034 -0.5526 5.8927 21 14 1.0242 1.4185 5.1026 22 1 -0.3488 0.9207 5.3717 23 1 1.4896 2.2339 6.2532 24 1 1.0159 2.2540 3.8749 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.1493 0.5390 -2.5435 29 1 3.2845 -0.9411 -3.6510 30 1 1.8308 -1.9683 -3.6507 31 1 -0.0950 -1.3951 -5.0104 32 1 -0.9189 -0.2281 -7.0160 33 1 0.4131 1.5826 -8.0212 34 1 2.5648 2.2322 -7.0155 35 1 3.3842 1.0716 -5.0044 36 1 0.4420 -2.0732 1.3347 37 1 1.8168 -2.5950 0.3317 38 1 1.9618 -2.5869 2.1057 39 1 1.9298 1.0869 2.3125 40 1 0.5723 -0.0346 2.5726 41 1 2.6682 -0.1833 6.7793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = 2.585334 kcal Electronic energy + Delta-G solvation = -20897.427894 eV Core-core repulsion = 17777.640323 eV Total energy + Delta-G solvation = -3119.787571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.10624 -39.30341 -36.65296 -34.88152 -32.66534 -31.78757 -31.24158 -30.12801 -27.63893 -26.42692 -25.30682 -23.38791 -22.91323 -21.59192 -20.64338 -19.38596 -17.42129 -16.88241 -16.58682 -15.94951 -15.75224 -15.25312 -14.97630 -14.37852 -14.26006 -13.92137 -13.75011 -13.63637 -13.21422 -13.10226 -12.84908 -12.72681 -12.48259 -11.97838 -11.69245 -11.40160 -11.37205 -11.22829 -11.07299 -10.87582 -10.65786 -10.35141 -9.83141 -9.46141 -9.27432 -9.26442 -9.02505 -8.89937 -8.54974 -7.30177 -6.01532 -3.98593 0.90910 1.05434 2.91496 3.14856 3.28666 3.36276 3.37125 3.63023 4.37540 4.43546 4.52876 4.66659 4.78425 4.82499 4.99052 5.07084 5.14862 5.29585 5.33476 5.40062 5.41414 5.52603 5.69216 5.71428 5.79128 5.95615 6.09335 6.16185 6.21016 6.27489 6.30860 6.42610 6.47745 6.63595 6.84425 6.92138 7.08833 7.52032 7.63940 7.94191 8.06393 8.49061 8.69666 9.09459 9.59501 11.11809 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.003259 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.536406 B = 8588.356567 C = 8864.089906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.062 3.938 3 H 0.101 0.899 4 C 0.521 3.479 5 O -0.515 6.515 6 N -0.734 5.734 7 C 0.162 3.838 8 C -0.104 4.104 9 C -0.101 4.101 10 C -0.123 4.123 11 C -0.116 4.116 12 C -0.123 4.123 13 C -0.101 4.101 14 N -0.507 5.507 15 C 0.024 3.976 16 C 0.162 3.838 17 C -0.507 4.507 18 H 0.082 0.918 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.267 1.267 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.398 0.602 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.009 0.991 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.027 0.973 40 H -0.012 1.012 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 4.403 -26.041 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.051 4.051 3 H 0.119 0.881 4 C 0.308 3.692 5 O -0.388 6.388 6 N -0.389 5.389 7 C 0.038 3.962 8 C -0.105 4.105 9 C -0.120 4.120 10 C -0.141 4.141 11 C -0.134 4.134 12 C -0.141 4.141 13 C -0.119 4.119 14 N -0.230 5.230 15 C -0.124 4.124 16 C 0.036 3.964 17 C -0.545 4.545 18 H 0.100 0.900 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.192 1.192 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.233 0.767 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.027 0.973 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.005 0.995 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.875 3.651 -25.745 26.658 hybrid contribution -1.799 1.301 0.226 2.232 sum -7.675 4.952 -25.520 27.105 Atomic orbital electron populations 1.22428 0.96350 1.02890 1.02537 1.21685 0.93497 0.99123 0.90816 0.88108 1.20813 0.79805 0.84613 0.84017 1.90640 1.36410 1.25705 1.86093 1.46121 1.55079 1.32656 1.05036 1.20127 0.99442 0.95504 0.81100 1.19958 0.95615 0.97636 0.97255 1.21147 0.95391 0.99630 0.95834 1.21181 1.00006 0.96560 0.96372 1.21222 0.94986 0.97357 0.99859 1.21187 0.96515 1.00051 0.96310 1.21166 0.99809 0.95201 0.95768 1.61964 1.58305 1.02398 1.00379 1.22522 0.96051 0.90250 1.03537 1.20249 0.93982 0.94281 0.87875 1.21041 1.26648 1.17408 0.89401 0.89990 1.24894 0.95806 0.96767 0.95907 1.69890 1.42996 1.41745 0.99335 0.86872 0.81440 0.83433 0.78035 1.20380 1.21157 1.19203 0.91809 0.91036 0.92582 0.76743 0.90680 0.90811 0.85792 0.85931 0.86060 0.85888 0.85682 0.97303 0.90755 0.90511 0.95494 0.99485 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 8.39 37.16 0.31 -2.30 16 2 C 0.06 1.05 2.77 -68.86 -0.19 0.86 16 3 H 0.10 1.60 8.03 -51.93 -0.42 1.18 16 4 C 0.52 8.39 6.85 -10.98 -0.08 8.31 16 5 O -0.51 -10.26 13.92 5.56 0.08 -10.19 16 6 N -0.73 -8.59 5.44 -61.47 -0.33 -8.92 16 7 C 0.16 1.71 5.80 -5.20 -0.03 1.68 16 8 C -0.10 -0.92 5.25 -104.63 -0.55 -1.47 16 9 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 10 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 11 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 12 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 13 C -0.10 -0.83 9.70 -39.58 -0.38 -1.22 16 14 N -0.51 -11.18 4.53 -237.73 -1.08 -12.26 16 15 C 0.02 0.52 8.42 60.06 0.51 1.02 16 16 C 0.16 3.96 3.23 -4.97 -0.02 3.95 16 17 C -0.51 -14.73 9.07 -34.44 -0.31 -15.04 16 18 H 0.08 2.63 7.35 -52.49 -0.39 2.24 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 21 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 25 H 0.06 0.94 6.48 -51.93 -0.34 0.61 16 26 H 0.07 1.10 6.75 -51.93 -0.35 0.75 16 27 H 0.06 0.61 7.56 -51.93 -0.39 0.21 16 28 H 0.40 3.80 7.88 -40.82 -0.32 3.48 16 29 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.01 0.17 6.51 -51.93 -0.34 -0.17 16 37 H 0.07 1.54 5.37 -51.93 -0.28 1.26 16 38 H 0.08 1.80 6.86 -51.93 -0.36 1.45 16 39 H 0.03 0.66 7.06 -51.93 -0.37 0.29 16 40 H -0.01 -0.30 6.36 -51.93 -0.33 -0.63 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -33.73 331.84 -8.64 -42.36 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.99 Total: 1.73 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.41 Total: -7.33 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.64 Total: -48.39 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.73 -8.64 -42.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.950 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds