Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.50700 * 109.47218 * 240.00042 * 2 1 3 5 5 O 1.21278 * 120.00695 * 240.00139 * 4 2 1 6 6 N 1.34787 * 119.99875 * 59.99760 * 4 2 1 7 7 C 1.46499 * 120.00001 * 180.02562 * 6 4 2 8 8 C 1.50698 * 109.46709 * 180.02562 * 7 6 4 9 9 C 1.38237 * 119.99546 * 269.72427 * 8 7 6 10 10 C 1.38240 * 119.99805 * 179.77162 * 9 8 7 11 11 C 1.38243 * 120.00053 * 0.50460 * 10 9 8 12 12 C 1.38237 * 119.99585 * 359.74910 * 11 10 9 13 13 C 1.38233 * 120.00429 * 90.00106 * 8 7 6 14 14 N 1.46902 * 109.47449 * 120.00521 * 2 1 3 15 15 C 1.46898 * 111.00283 * 58.95014 * 14 2 1 16 16 C 1.46906 * 110.99573 * 294.99873 * 14 2 1 17 17 C 1.50706 * 109.46929 * 190.00042 * 16 14 2 18 18 H 1.07998 * 119.99628 * 0.02562 * 17 16 14 19 19 C 1.37871 * 119.99847 * 179.97438 * 17 16 14 20 20 N 1.31507 * 120.00190 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00193 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47081 * 89.99276 * 21 19 17 23 23 H 1.48499 * 109.47356 * 209.99897 * 21 19 17 24 24 H 1.48503 * 109.46728 * 329.99994 * 21 19 17 25 25 H 1.09005 * 109.47033 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47107 * 299.99473 * 1 2 3 27 27 H 1.08999 * 109.47381 * 60.00003 * 1 2 3 28 28 H 0.97003 * 119.99350 * 0.02562 * 6 4 2 29 29 H 1.08998 * 109.46848 * 299.99798 * 7 6 4 30 30 H 1.08996 * 109.47271 * 60.00120 * 7 6 4 31 31 H 1.07992 * 120.00722 * 0.02562 * 9 8 7 32 32 H 1.07999 * 120.00281 * 180.23521 * 10 9 8 33 33 H 1.07998 * 120.00134 * 179.73019 * 11 10 9 34 34 H 1.07998 * 119.99822 * 179.97438 * 12 11 10 35 35 H 1.08000 * 120.00038 * 359.97438 * 13 8 7 36 36 H 1.08997 * 109.47334 * 296.05250 * 15 14 2 37 37 H 1.09000 * 109.46674 * 56.05127 * 15 14 2 38 38 H 1.08995 * 109.47296 * 176.04950 * 15 14 2 39 39 H 1.08998 * 109.47121 * 309.99709 * 16 14 2 40 40 H 1.09000 * 109.47141 * 69.99907 * 16 14 2 41 41 H 0.96996 * 120.00773 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4547 7 6 2.1945 -0.9408 -3.6508 8 6 1.6927 -0.2299 -4.8812 9 6 0.4873 -0.5982 -5.4488 10 6 0.0247 0.0570 -6.5747 11 6 0.7724 1.0736 -7.1391 12 6 1.9804 1.4384 -6.5744 13 6 2.4405 0.7866 -5.4455 14 7 2.0197 -0.6926 1.1994 15 6 1.5284 -2.0762 1.2459 16 6 1.6488 0.0391 2.4181 17 6 2.3681 -0.5573 3.6005 18 1 3.0344 -1.3956 3.4606 19 6 2.1762 -0.0320 4.8607 20 7 2.8034 -0.5526 5.8927 21 14 1.0242 1.4185 5.1026 22 1 -0.3488 0.9207 5.3717 23 1 1.4896 2.2339 6.2532 24 1 1.0159 2.2540 3.8749 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.1493 0.5390 -2.5435 29 1 3.2845 -0.9411 -3.6510 30 1 1.8308 -1.9683 -3.6507 31 1 -0.0950 -1.3951 -5.0104 32 1 -0.9189 -0.2281 -7.0160 33 1 0.4131 1.5826 -8.0212 34 1 2.5648 2.2322 -7.0155 35 1 3.3842 1.0716 -5.0044 36 1 0.4420 -2.0732 1.3347 37 1 1.8168 -2.5950 0.3317 38 1 1.9618 -2.5869 2.1057 39 1 1.9298 1.0869 2.3125 40 1 0.5723 -0.0346 2.5726 41 1 2.6682 -0.1833 6.7793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096969340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = -21.561670 kcal Electronic energy + Delta-G solvation = -20898.474987 eV Core-core repulsion = 17777.640323 eV Total energy + Delta-G solvation = -3120.834664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26376 -40.08015 -38.17564 -35.96009 -34.75890 -32.85466 -31.78880 -31.43929 -29.54885 -27.32570 -26.89845 -24.95243 -23.46701 -22.47275 -22.06288 -20.79344 -19.09509 -18.19228 -17.68529 -17.01098 -16.70761 -16.38644 -16.15625 -15.82105 -15.57117 -15.49702 -15.05989 -14.66391 -14.34134 -14.29510 -13.86355 -13.79829 -13.52830 -13.45290 -13.13988 -12.91907 -12.73389 -12.50523 -12.42872 -12.05810 -11.98758 -11.90314 -11.75069 -11.47109 -10.77671 -10.66239 -10.09285 -9.82282 -9.73964 -8.97218 -8.26165 -6.30650 0.30740 0.49831 1.36265 1.39488 1.50254 1.64999 2.16023 2.36773 2.93351 3.06530 3.28480 3.66600 3.84072 3.93733 4.09044 4.15405 4.16754 4.30980 4.38173 4.52963 4.56497 4.60238 4.67402 4.73606 4.78613 4.81730 4.88038 5.03261 5.06833 5.16655 5.22404 5.23507 5.45072 5.54308 5.55486 5.62681 5.66266 5.97170 6.08940 6.29241 6.51471 6.70736 6.76137 7.28974 7.33029 8.91216 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.003259 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.536406 B = 8588.356567 C = 8864.089906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.057 3.943 3 H 0.117 0.883 4 C 0.524 3.476 5 O -0.562 6.562 6 N -0.711 5.711 7 C 0.165 3.835 8 C -0.113 4.113 9 C -0.109 4.109 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.128 4.128 13 C -0.111 4.111 14 N -0.535 5.535 15 C 0.037 3.963 16 C 0.175 3.825 17 C -0.521 4.521 18 H 0.028 0.972 19 C 0.003 3.997 20 N -0.952 5.952 21 Si 0.954 3.046 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.240 1.240 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.413 0.587 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.036 0.964 40 H -0.001 1.001 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 7.058 -28.603 30.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.055 4.055 3 H 0.134 0.866 4 C 0.310 3.690 5 O -0.440 6.440 6 N -0.365 5.365 7 C 0.042 3.958 8 C -0.114 4.114 9 C -0.128 4.128 10 C -0.145 4.145 11 C -0.135 4.135 12 C -0.146 4.146 13 C -0.130 4.130 14 N -0.259 5.259 15 C -0.111 4.111 16 C 0.049 3.951 17 C -0.559 4.559 18 H 0.047 0.953 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.776 3.224 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.163 1.163 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.250 0.750 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.147 0.853 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.145 0.855 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.384 6.332 -28.373 30.256 hybrid contribution -0.953 0.416 0.896 1.372 sum -9.336 6.748 -27.477 29.795 Atomic orbital electron populations 1.22360 0.93706 1.03013 1.04302 1.21810 0.95622 0.99181 0.88868 0.86562 1.20685 0.79315 0.83976 0.84993 1.90628 1.38733 1.27819 1.86796 1.45905 1.53950 1.32528 1.04068 1.20114 0.98886 0.95472 0.81335 1.19780 0.96401 0.98327 0.96868 1.21283 0.95191 0.99959 0.96338 1.21460 1.00801 0.96337 0.95939 1.21562 0.94615 0.97027 1.00291 1.21450 0.96932 1.00305 0.95897 1.21288 0.99984 0.95320 0.96381 1.61741 1.59980 1.02673 1.01481 1.22321 0.96585 0.90156 1.02004 1.19980 0.93686 0.94273 0.87195 1.21294 1.26352 1.16327 0.91947 0.95348 1.25948 0.97791 1.00402 0.95180 1.70071 1.45174 1.43954 1.00113 0.85626 0.78744 0.79046 0.78984 1.19085 1.20853 1.16304 0.92507 0.91592 0.88444 0.75029 0.91672 0.91343 0.85274 0.84022 0.83853 0.84141 0.85513 0.95728 0.90276 0.94296 0.94579 0.98321 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 8.39 71.98 0.60 -3.83 16 2 C 0.06 1.83 2.77 44.17 0.12 1.96 16 3 H 0.12 3.36 8.03 -2.38 -0.02 3.34 16 4 C 0.52 16.31 6.85 87.66 0.60 16.91 16 5 O -0.56 -22.69 13.92 -3.02 -0.04 -22.73 16 6 N -0.71 -15.30 5.44 -466.79 -2.54 -17.84 16 7 C 0.16 3.34 5.80 85.63 0.50 3.84 16 8 C -0.11 -1.82 5.25 -19.87 -0.10 -1.92 16 9 C -0.11 -1.54 9.70 22.27 0.22 -1.32 16 10 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 11 C -0.12 -1.26 10.05 22.27 0.22 -1.03 16 12 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 13 C -0.11 -1.64 9.70 22.27 0.22 -1.42 16 14 N -0.54 -23.63 4.53 -906.03 -4.10 -27.74 16 15 C 0.04 1.63 8.42 127.69 1.08 2.71 16 16 C 0.18 8.45 3.23 85.56 0.28 8.73 16 17 C -0.52 -31.29 9.07 25.60 0.23 -31.06 16 18 H 0.03 1.95 7.35 -2.91 -0.02 1.93 16 19 C 0.00 0.21 5.47 84.65 0.46 0.67 16 20 N -0.95 -61.16 13.96 21.44 0.30 -60.86 16 21 Si 0.95 43.72 27.47 68.60 1.88 45.61 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 25 H 0.06 1.53 6.48 -2.38 -0.02 1.51 16 26 H 0.07 1.78 6.75 -2.39 -0.02 1.77 16 27 H 0.10 1.65 7.56 -2.39 -0.02 1.63 16 28 H 0.41 6.58 7.88 -92.71 -0.73 5.85 16 29 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 30 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 31 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.02 0.97 6.51 -2.39 -0.02 0.95 16 37 H 0.08 3.38 5.37 -2.39 -0.01 3.37 16 38 H 0.04 1.94 6.86 -2.39 -0.02 1.93 16 39 H 0.04 1.68 7.06 -2.39 -0.02 1.66 16 40 H 0.00 -0.04 6.36 -2.39 -0.02 -0.05 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -76.53 331.84 0.61 -75.93 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.24 Total: 15.96 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.87 Total: -8.33 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -6.35 Total: -106.43 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.04 Total: -22.73 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -76.53 0.61 -75.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.364 kcal (2) G-P(sol) polarization free energy of solvation -76.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds