Wall clock time and date at job start Mon Mar 30 2020 01:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47005 * 2 1 4 4 C 1.46899 * 111.00122 * 293.95024 * 3 2 1 5 5 C 1.46903 * 110.99936 * 170.00169 * 3 2 1 6 6 C 1.50703 * 109.47319 * 190.00026 * 5 3 2 7 7 C 1.38256 * 119.99649 * 269.97685 * 6 5 3 8 8 C 1.38211 * 119.99924 * 179.97438 * 7 6 5 9 9 C 1.38257 * 119.99697 * 359.85298 * 8 7 6 10 10 C 1.38211 * 120.00256 * 0.39958 * 9 8 7 11 11 C 1.50698 * 120.00021 * 179.80968 * 10 9 8 12 12 N 1.46500 * 109.47467 * 269.72589 * 11 10 9 13 13 C 1.34773 * 120.00431 * 180.02562 * 12 11 10 14 14 O 1.21693 * 119.99830 * 359.97438 * 13 12 11 15 15 C 1.46368 * 120.00188 * 179.72417 * 13 12 11 16 16 H 1.08002 * 119.99624 * 0.27750 * 15 13 12 17 17 C 1.40052 * 119.99965 * 180.27115 * 15 13 12 18 18 N 1.30664 * 120.00038 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99598 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47422 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46915 * 120.00598 * 19 17 15 22 22 H 1.48503 * 109.47032 * 240.00138 * 19 17 15 23 23 C 1.38207 * 119.99936 * 89.99506 * 6 5 3 24 24 H 1.09004 * 109.47168 * 59.99756 * 1 2 3 25 25 H 1.08992 * 109.47502 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47008 * 300.00097 * 1 2 3 27 27 H 1.08999 * 109.47008 * 239.99903 * 2 1 3 28 28 H 1.09003 * 109.46775 * 119.99874 * 2 1 3 29 29 H 1.08996 * 109.47527 * 296.05184 * 4 3 2 30 30 H 1.09004 * 109.47139 * 56.05123 * 4 3 2 31 31 H 1.09007 * 109.47293 * 176.04794 * 4 3 2 32 32 H 1.08998 * 109.47473 * 69.99115 * 5 3 2 33 33 H 1.09002 * 109.46599 * 309.99936 * 5 3 2 34 34 H 1.08003 * 120.00219 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.99847 * 180.02562 * 8 7 6 36 36 H 1.08008 * 119.99773 * 180.21547 * 9 8 7 37 37 H 1.09009 * 109.46852 * 149.72469 * 11 10 9 38 38 H 1.08998 * 109.47607 * 29.73201 * 11 10 9 39 39 H 0.97000 * 119.99456 * 359.97438 * 12 11 10 40 40 H 0.96999 * 119.99868 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.00376 * 359.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.4685 1.4311 0.2381 6 6 3.8935 2.8574 0.4755 7 6 4.2774 3.6506 -0.5898 8 6 4.6666 4.9588 -0.3723 9 6 4.6691 5.4750 0.9103 10 6 4.2903 4.6805 1.9759 11 6 4.2972 5.2419 3.3743 12 7 5.6063 5.0068 3.9886 13 6 5.8452 5.4257 5.2471 14 8 4.9736 5.9996 5.8731 15 6 7.1511 5.1855 5.8629 16 1 7.9248 4.6765 5.3071 17 6 7.3975 5.6157 7.1727 18 7 6.4613 6.2311 7.8452 19 14 9.0644 5.3097 7.9583 20 1 9.9432 4.6002 6.9943 21 1 9.6830 6.6081 8.3285 22 1 8.8923 4.4782 9.1766 23 6 3.8998 3.3722 1.7581 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1770 1.5790 -2.0859 30 1 0.5920 2.0179 -1.4052 31 1 1.9825 3.1098 -1.1988 32 1 3.9926 1.0358 -0.6320 33 1 3.7122 0.8289 1.1134 34 1 4.2731 3.2480 -1.5920 35 1 4.9661 5.5786 -1.2045 36 1 4.9700 6.4984 1.0799 37 1 3.5246 4.7514 3.9666 38 1 4.1006 6.3134 3.3368 39 1 6.3009 4.5491 3.4897 40 1 6.6318 6.5287 8.7525 41 1 3.5998 2.7526 2.5902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153643875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:40 Heat of formation + Delta-G solvation = -17.155882 kcal Electronic energy + Delta-G solvation = -20545.042298 eV Core-core repulsion = 17424.398684 eV Total energy + Delta-G solvation = -3120.643614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.65114 -37.76402 -36.96182 -33.78399 -32.46586 -32.13150 -30.62442 -29.99858 -27.44704 -26.79806 -24.79195 -24.65226 -21.91129 -21.20094 -20.34559 -19.57036 -17.28853 -16.29776 -16.08382 -15.90043 -15.34895 -15.09623 -15.01290 -14.37141 -14.02285 -13.84652 -13.69744 -13.06508 -12.91086 -12.70901 -12.52184 -12.22540 -12.12942 -12.00621 -11.77627 -11.73072 -11.33727 -11.14055 -11.11061 -10.93607 -10.70742 -10.68517 -10.41038 -10.16894 -8.83462 -8.72450 -8.69547 -8.43658 -7.54995 -7.46206 -6.15587 -4.60886 1.42893 1.54378 3.14961 3.23019 3.27735 3.61442 4.06028 4.16435 4.61727 4.66044 4.79905 4.83808 4.97347 5.04289 5.13730 5.20684 5.21124 5.25507 5.31193 5.37681 5.52561 5.55456 5.63142 5.69105 5.71024 5.79676 5.81809 5.99227 6.05127 6.13376 6.37394 6.49649 6.57680 6.64614 6.82578 6.87565 6.95856 7.15631 7.46465 7.96984 8.12510 8.36803 9.05497 9.57630 10.63067 10.81736 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.003249 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.148489 B = 8615.039708 C = 9020.682311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.537 5.537 4 C 0.019 3.981 5 C 0.096 3.904 6 C -0.084 4.084 7 C -0.119 4.119 8 C -0.124 4.124 9 C -0.103 4.103 10 C -0.086 4.086 11 C 0.170 3.830 12 N -0.762 5.762 13 C 0.554 3.446 14 O -0.581 6.581 15 C -0.544 4.544 16 H 0.068 0.932 17 C 0.087 3.913 18 N -0.768 5.768 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.081 4.081 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.381 0.619 40 H 0.267 0.733 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.426 -10.093 -18.792 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.129 4.129 5 C -0.031 4.031 6 C -0.085 4.085 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.122 4.122 10 C -0.086 4.086 11 C 0.045 3.955 12 N -0.418 5.418 13 C 0.358 3.642 14 O -0.464 6.464 15 C -0.581 4.581 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.397 5.397 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.100 4.100 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.212 0.788 40 H 0.078 0.922 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.391 -9.336 -17.752 21.376 hybrid contribution 1.546 -0.751 -0.604 1.822 sum -5.845 -10.087 -18.356 21.745 Atomic orbital electron populations 1.21808 0.94804 1.01457 1.02630 1.22104 0.96249 0.88753 1.00709 1.62006 1.13303 1.15668 1.35128 1.22503 1.01214 0.99970 0.89223 1.21034 0.87296 0.93767 1.01006 1.19592 1.00131 0.95305 0.93462 1.20931 1.00572 0.94307 0.97943 1.21040 1.00832 0.95475 0.96875 1.21137 0.98872 0.99998 0.92193 1.20213 0.98421 0.94048 0.95949 1.19809 0.88900 0.99202 0.87593 1.46190 1.12635 1.65843 1.17128 1.18254 0.89063 0.78357 0.78498 1.90601 1.47687 1.45966 1.62133 1.20912 0.97737 1.40404 0.99054 0.91409 1.25713 0.97553 0.93047 0.96944 1.70032 1.32208 1.27888 1.09593 0.86323 0.82543 0.78558 0.79355 1.18792 1.20189 1.20178 1.20953 0.98005 0.94798 0.96284 0.92727 0.92369 0.91641 0.95123 0.90662 0.95959 0.91320 0.90726 0.94155 0.89836 0.86899 0.86354 0.85984 0.92511 0.92575 0.78797 0.92189 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.84 37.16 0.37 -0.79 16 2 C 0.05 0.43 5.68 -3.82 -0.02 0.40 16 3 N -0.54 -5.59 4.75 -244.36 -1.16 -6.75 16 4 C 0.02 0.17 8.94 60.06 0.54 0.71 16 5 C 0.10 1.02 5.12 -4.97 -0.03 0.99 16 6 C -0.08 -1.05 4.88 -104.63 -0.51 -1.57 16 7 C -0.12 -1.37 7.97 -39.58 -0.32 -1.69 16 8 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 9 C -0.10 -1.47 9.70 -39.58 -0.38 -1.86 16 10 C -0.09 -1.38 5.25 -104.62 -0.55 -1.93 16 11 C 0.17 3.40 5.80 -5.19 -0.03 3.37 16 12 N -0.76 -17.55 5.54 -62.90 -0.35 -17.89 16 13 C 0.55 16.07 7.75 -12.99 -0.10 15.97 16 14 O -0.58 -19.15 15.02 5.20 0.08 -19.08 16 15 C -0.54 -15.60 9.54 -35.63 -0.34 -15.94 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 17 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 18 N -0.77 -23.34 11.83 55.55 0.66 -22.68 16 19 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 20 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.08 -1.19 9.36 -39.59 -0.37 -1.56 16 24 H 0.05 0.40 6.47 -51.93 -0.34 0.07 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 28 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 29 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.58 6.30 -51.93 -0.33 0.25 16 31 H 0.07 0.75 6.17 -51.93 -0.32 0.43 16 32 H 0.04 0.39 8.06 -51.93 -0.42 -0.03 16 33 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.11 1.07 8.04 -52.48 -0.42 0.65 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 37 H 0.06 1.20 8.09 -51.92 -0.42 0.78 16 38 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.38 7.90 8.44 -40.82 -0.34 7.56 16 40 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 41 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -34.19 341.72 -9.22 -43.41 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.33 Total: 5.93 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.24 Total: -3.41 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.85 Total: -47.32 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.08 Total: -19.08 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.19 -9.22 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153643875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.256 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds