Wall clock time and date at job start Mon Mar 30 2020 01:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47005 * 2 1 4 4 C 1.46899 * 111.00122 * 293.95024 * 3 2 1 5 5 C 1.46903 * 110.99936 * 170.00169 * 3 2 1 6 6 C 1.50703 * 109.47319 * 190.00026 * 5 3 2 7 7 C 1.38256 * 119.99649 * 269.97685 * 6 5 3 8 8 C 1.38211 * 119.99924 * 179.97438 * 7 6 5 9 9 C 1.38257 * 119.99697 * 359.85298 * 8 7 6 10 10 C 1.38211 * 120.00256 * 0.39958 * 9 8 7 11 11 C 1.50698 * 120.00021 * 179.80968 * 10 9 8 12 12 N 1.46500 * 109.47467 * 269.72589 * 11 10 9 13 13 C 1.34773 * 120.00431 * 180.02562 * 12 11 10 14 14 O 1.21693 * 119.99830 * 359.97438 * 13 12 11 15 15 C 1.46368 * 120.00188 * 179.72417 * 13 12 11 16 16 H 1.08002 * 119.99624 * 0.27750 * 15 13 12 17 17 C 1.40052 * 119.99965 * 180.27115 * 15 13 12 18 18 N 1.30664 * 120.00038 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99598 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47422 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46915 * 120.00598 * 19 17 15 22 22 H 1.48503 * 109.47032 * 240.00138 * 19 17 15 23 23 C 1.38207 * 119.99936 * 89.99506 * 6 5 3 24 24 H 1.09004 * 109.47168 * 59.99756 * 1 2 3 25 25 H 1.08992 * 109.47502 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47008 * 300.00097 * 1 2 3 27 27 H 1.08999 * 109.47008 * 239.99903 * 2 1 3 28 28 H 1.09003 * 109.46775 * 119.99874 * 2 1 3 29 29 H 1.08996 * 109.47527 * 296.05184 * 4 3 2 30 30 H 1.09004 * 109.47139 * 56.05123 * 4 3 2 31 31 H 1.09007 * 109.47293 * 176.04794 * 4 3 2 32 32 H 1.08998 * 109.47473 * 69.99115 * 5 3 2 33 33 H 1.09002 * 109.46599 * 309.99936 * 5 3 2 34 34 H 1.08003 * 120.00219 * 359.97438 * 7 6 5 35 35 H 1.08000 * 119.99847 * 180.02562 * 8 7 6 36 36 H 1.08008 * 119.99773 * 180.21547 * 9 8 7 37 37 H 1.09009 * 109.46852 * 149.72469 * 11 10 9 38 38 H 1.08998 * 109.47607 * 29.73201 * 11 10 9 39 39 H 0.97000 * 119.99456 * 359.97438 * 12 11 10 40 40 H 0.96999 * 119.99868 * 179.97438 * 18 17 15 41 41 H 1.07998 * 120.00376 * 359.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.4685 1.4311 0.2381 6 6 3.8935 2.8574 0.4755 7 6 4.2774 3.6506 -0.5898 8 6 4.6666 4.9588 -0.3723 9 6 4.6691 5.4750 0.9103 10 6 4.2903 4.6805 1.9759 11 6 4.2972 5.2419 3.3743 12 7 5.6063 5.0068 3.9886 13 6 5.8452 5.4257 5.2471 14 8 4.9736 5.9996 5.8731 15 6 7.1511 5.1855 5.8629 16 1 7.9248 4.6765 5.3071 17 6 7.3975 5.6157 7.1727 18 7 6.4613 6.2311 7.8452 19 14 9.0644 5.3097 7.9583 20 1 9.9432 4.6002 6.9943 21 1 9.6830 6.6081 8.3285 22 1 8.8923 4.4782 9.1766 23 6 3.8998 3.3722 1.7581 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1770 1.5790 -2.0859 30 1 0.5920 2.0179 -1.4052 31 1 1.9825 3.1098 -1.1988 32 1 3.9926 1.0358 -0.6320 33 1 3.7122 0.8289 1.1134 34 1 4.2731 3.2480 -1.5920 35 1 4.9661 5.5786 -1.2045 36 1 4.9700 6.4984 1.0799 37 1 3.5246 4.7514 3.9666 38 1 4.1006 6.3134 3.3368 39 1 6.3009 4.5491 3.4897 40 1 6.6318 6.5287 8.7525 41 1 3.5998 2.7526 2.5902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153643875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:40 Heat of formation + Delta-G solvation = -41.025429 kcal Electronic energy + Delta-G solvation = -20546.077359 eV Core-core repulsion = 17424.398684 eV Total energy + Delta-G solvation = -3121.678676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73322 -39.33019 -38.33361 -35.51597 -34.52084 -33.24212 -32.04553 -30.85025 -28.78127 -28.23171 -26.48759 -25.48535 -22.95113 -22.10202 -21.76419 -21.27882 -19.28193 -17.55066 -17.32807 -16.86508 -16.75795 -16.36354 -16.07054 -16.00342 -15.68054 -15.03191 -14.78876 -14.42068 -14.31460 -13.83297 -13.77364 -13.43025 -13.29558 -13.10874 -12.88300 -12.84611 -12.72970 -12.64995 -12.55675 -12.42790 -11.98822 -11.82758 -11.78853 -11.70479 -10.95342 -10.06890 -9.72889 -9.59593 -9.51477 -9.21666 -8.29499 -6.86842 0.34334 0.47700 1.40441 1.40690 1.59090 2.25031 2.45996 2.64823 3.16427 3.39129 3.59186 3.72093 3.82954 4.03022 4.11597 4.21919 4.27941 4.32372 4.42166 4.50982 4.57930 4.63839 4.64173 4.74128 4.75432 4.83761 4.94397 5.03965 5.09561 5.13719 5.17219 5.31409 5.36738 5.53544 5.63073 5.74292 5.86294 6.04833 6.12388 6.17121 6.18593 6.25485 6.85664 7.52377 8.47215 8.66327 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024682 B = 0.003249 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.148489 B = 8615.039708 C = 9020.682311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.556 5.556 4 C 0.020 3.980 5 C 0.098 3.902 6 C -0.081 4.081 7 C -0.107 4.107 8 C -0.116 4.116 9 C -0.113 4.113 10 C -0.103 4.103 11 C 0.176 3.824 12 N -0.748 5.748 13 C 0.536 3.464 14 O -0.633 6.633 15 C -0.571 4.571 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.822 5.822 19 Si 1.001 2.999 20 H -0.247 1.247 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.093 4.093 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.121 0.879 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.393 0.607 40 H 0.275 0.725 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -11.593 -21.200 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.281 5.281 4 C -0.128 4.128 5 C -0.029 4.029 6 C -0.081 4.081 7 C -0.125 4.125 8 C -0.134 4.134 9 C -0.132 4.132 10 C -0.103 4.103 11 C 0.052 3.948 12 N -0.402 5.402 13 C 0.341 3.659 14 O -0.521 6.521 15 C -0.608 4.608 16 H 0.105 0.895 17 C -0.188 4.188 18 N -0.452 5.452 19 Si 0.820 3.180 20 H -0.170 1.170 21 H -0.192 1.192 22 H -0.193 1.193 23 C -0.113 4.113 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.139 0.861 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.227 0.773 40 H 0.085 0.915 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.826 -10.865 -20.226 23.688 hybrid contribution 0.966 -0.315 0.030 1.016 sum -4.860 -11.180 -20.197 23.591 Atomic orbital electron populations 1.21786 0.94304 1.02241 1.02056 1.22142 0.96633 0.87902 1.01151 1.61978 1.13081 1.16909 1.36149 1.22499 1.01785 0.99370 0.89133 1.21010 0.87840 0.92349 1.01670 1.19805 0.99245 0.96477 0.92604 1.21300 0.98410 0.93801 0.98990 1.21355 0.99492 0.96051 0.96491 1.21206 0.99210 0.99892 0.92847 1.19822 1.01570 0.95106 0.93840 1.19730 0.86740 0.98306 0.90001 1.45865 1.14110 1.64550 1.15721 1.18681 0.89142 0.78150 0.79936 1.90551 1.49162 1.48372 1.63995 1.21440 0.98130 1.41015 1.00200 0.89486 1.27022 1.02667 0.91889 0.97240 1.70197 1.35491 1.29050 1.10427 0.84926 0.75897 0.78878 0.78274 1.16981 1.19240 1.19257 1.20911 0.98818 0.94191 0.97334 0.92302 0.90945 0.93160 0.93944 0.90894 0.94553 0.90792 0.91654 0.92368 0.90184 0.83739 0.83248 0.86113 0.94534 0.94137 0.77331 0.91507 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.84 71.98 0.71 -1.33 16 2 C 0.05 0.75 5.68 86.31 0.49 1.24 16 3 N -0.56 -10.56 4.75 -927.03 -4.41 -14.97 16 4 C 0.02 0.32 8.94 127.69 1.14 1.46 16 5 C 0.10 1.88 5.12 85.56 0.44 2.32 16 6 C -0.08 -1.88 4.88 -19.87 -0.10 -1.97 16 7 C -0.11 -2.10 7.97 22.27 0.18 -1.93 16 8 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 9 C -0.11 -3.14 9.70 22.27 0.22 -2.93 16 10 C -0.10 -3.37 5.25 -19.87 -0.10 -3.48 16 11 C 0.18 7.51 5.80 85.63 0.50 8.01 16 12 N -0.75 -35.85 5.54 -471.14 -2.61 -38.46 16 13 C 0.54 32.42 7.75 86.36 0.67 33.09 16 14 O -0.63 -44.07 15.02 -4.33 -0.06 -44.13 16 15 C -0.57 -33.29 9.54 24.83 0.24 -33.06 16 16 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 17 C 0.03 1.52 5.50 85.31 0.47 1.99 16 18 N -0.82 -51.41 11.83 21.84 0.26 -51.15 16 19 Si 1.00 41.61 29.56 68.60 2.03 43.64 16 20 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 22 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 23 C -0.09 -2.76 9.36 22.27 0.21 -2.55 16 24 H 0.06 0.76 6.47 -2.38 -0.02 0.74 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 28 H 0.07 1.13 7.93 -2.39 -0.02 1.12 16 29 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 1.08 6.30 -2.38 -0.02 1.06 16 31 H 0.06 1.15 6.17 -2.38 -0.01 1.13 16 32 H 0.06 0.92 8.06 -2.39 -0.02 0.90 16 33 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 34 H 0.14 2.01 8.04 -2.91 -0.02 1.99 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.12 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 38 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 39 H 0.39 16.67 8.44 -92.71 -0.78 15.89 16 40 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 41 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -77.21 341.72 0.71 -76.50 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.23 Total: 29.96 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.27 Total: -1.38 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -6.76 Total: -104.58 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.06 Total: -44.13 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -77.21 0.71 -76.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153643875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.477 kcal (2) G-P(sol) polarization free energy of solvation -77.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds