Wall clock time and date at job start Mon Mar 30 2020 02:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 C 1.38237 * 120.00087 * 269.73144 * 4 3 2 6 6 C 1.38237 * 119.99887 * 179.76622 * 5 4 3 7 7 C 1.38240 * 119.99987 * 0.50242 * 6 5 4 8 8 C 1.38235 * 120.00002 * 359.74667 * 7 6 5 9 9 C 1.38237 * 120.00019 * 0.02562 * 8 7 6 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21582 * 120.00318 * 179.97438 * 10 2 1 12 12 N 1.34774 * 119.99640 * 359.97438 * 10 2 1 13 13 C 1.46499 * 120.00002 * 180.02562 * 12 10 2 14 14 C 1.53001 * 109.47403 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47313 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47430 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99682 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00138 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00389 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00087 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47171 * 89.99470 * 20 18 16 22 22 H 1.48493 * 109.47557 * 209.99896 * 20 18 16 23 23 H 1.48505 * 109.46817 * 329.99997 * 20 18 16 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 28 28 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 29 29 H 1.07995 * 119.99731 * 359.97438 * 5 4 3 30 30 H 1.07995 * 120.00222 * 180.22621 * 6 5 4 31 31 H 1.08005 * 119.99922 * 179.72333 * 7 6 5 32 32 H 1.07998 * 120.00124 * 179.97438 * 8 7 6 33 33 H 1.07999 * 120.00129 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00361 * 359.97438 * 12 10 2 35 35 H 1.09002 * 109.47093 * 299.99866 * 13 12 10 36 36 H 1.09006 * 109.47588 * 59.99611 * 13 12 10 37 37 H 1.09002 * 109.47172 * 300.00167 * 14 13 12 38 38 H 1.09004 * 109.47016 * 59.99953 * 14 13 12 39 39 H 1.09002 * 109.47382 * 300.00337 * 15 14 13 40 40 H 1.09006 * 109.47389 * 60.00137 * 15 14 13 41 41 H 0.96999 * 120.00245 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 6 1.5298 2.5065 2.0705 6 6 1.7580 2.9016 3.3754 7 6 2.9100 2.5025 4.0271 8 6 3.8313 1.7040 3.3755 9 6 3.6010 1.3051 2.0722 10 6 2.1389 -1.1672 -0.0005 11 8 3.3547 -1.1672 -0.0010 12 7 1.4650 -2.3343 -0.0005 13 6 2.1975 -3.6031 -0.0005 14 6 1.2033 -4.7660 0.0001 15 6 1.9682 -6.0910 -0.0005 16 6 0.9890 -7.2365 0.0007 17 1 -0.0728 -7.0392 0.0015 18 6 1.4486 -8.5364 0.0010 19 7 2.7416 -8.7768 0.0006 20 14 0.2348 -9.9563 0.0018 21 1 -0.0875 -10.3329 -1.3980 22 1 0.8349 -11.1202 0.7019 23 1 -1.0083 -9.5443 0.7022 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 3.1499 1.1384 -0.5139 28 1 1.6084 2.0284 -0.5139 29 1 0.6321 2.8221 1.5598 30 1 1.0384 3.5257 3.8844 31 1 3.0904 2.8149 5.0451 32 1 4.7316 1.3926 3.8844 33 1 4.3209 0.6816 1.5630 34 1 0.4950 -2.3344 0.0002 35 1 2.8241 -3.6609 -0.8905 36 1 2.8243 -3.6609 0.8894 37 1 0.5769 -4.7081 0.8903 38 1 0.5762 -4.7085 -0.8897 39 1 2.5943 -6.1487 -0.8909 40 1 2.5956 -6.1489 0.8890 41 1 3.0649 -9.6913 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170887502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:35 Heat of formation + Delta-G solvation = -14.112979 kcal Electronic energy + Delta-G solvation = -20490.893949 eV Core-core repulsion = 17370.382285 eV Total energy + Delta-G solvation = -3120.511664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26477 -39.04777 -35.90994 -35.18160 -33.36784 -32.02947 -31.01763 -30.82373 -27.53096 -26.95952 -25.36169 -22.96404 -22.67135 -21.53396 -20.60630 -19.59077 -17.88719 -17.04016 -16.54672 -16.09202 -15.85524 -15.16093 -15.13046 -14.56390 -14.39850 -14.10445 -13.78981 -13.53032 -13.23102 -13.04710 -12.79909 -12.58769 -12.27316 -11.97561 -11.78052 -11.68208 -11.36462 -11.09251 -10.89536 -10.69157 -10.58049 -10.05436 -9.84366 -9.44018 -9.11817 -9.04595 -8.97890 -8.88304 -8.48455 -8.36128 -6.00756 -4.03835 1.13555 1.28469 2.77862 3.31318 3.36240 3.37657 3.40447 3.70989 4.11620 4.45294 4.63575 4.66885 4.86101 4.88237 4.96782 5.06550 5.26010 5.34323 5.34965 5.43625 5.52283 5.57433 5.72514 5.83792 5.84876 5.93724 6.20731 6.29796 6.32948 6.39961 6.51335 6.56895 6.64400 6.81972 6.87651 7.03559 7.04399 7.65153 7.78232 7.98270 8.09193 8.39254 8.75958 9.02889 9.60239 11.10566 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.002835 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.554875 B = 9874.506756 C =10091.748756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.633 5.633 3 C 0.173 3.827 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.128 4.128 7 C -0.119 4.119 8 C -0.124 4.124 9 C -0.091 4.091 10 C 0.703 3.297 11 O -0.589 6.589 12 N -0.741 5.741 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.393 0.607 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 25.028 3.413 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.371 5.371 3 C 0.050 3.950 4 C -0.108 4.108 5 C -0.128 4.128 6 C -0.146 4.146 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.110 4.110 10 C 0.404 3.596 11 O -0.467 6.467 12 N -0.396 5.396 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.228 0.772 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.365 24.837 3.389 25.291 hybrid contribution -1.202 -0.881 0.151 1.498 sum -4.566 23.955 3.539 24.642 Atomic orbital electron populations 1.21714 0.80025 1.03012 1.01626 1.47043 1.06136 1.04718 1.79211 1.20170 0.98378 0.84023 0.92427 1.20324 0.95081 0.98080 0.97358 1.21020 0.98619 0.98173 0.94960 1.21092 0.97686 1.00792 0.95025 1.21172 0.94558 0.98279 0.99763 1.21220 0.99599 0.98274 0.95098 1.21302 0.97207 0.97789 0.94656 1.15944 0.85425 0.80376 0.77847 1.90882 1.11529 1.86203 1.58093 1.45533 1.09844 1.05177 1.79094 1.21509 0.95141 0.80396 1.01844 1.21886 0.97866 0.95304 1.00752 1.19024 0.95470 0.89163 0.97685 1.21205 0.92987 0.90954 1.50889 0.92669 1.25029 0.95127 0.99018 0.95303 1.69967 1.12523 1.20205 1.50587 0.86583 0.81253 0.82002 0.78082 1.20666 1.21210 1.19902 0.92553 0.91075 0.91376 0.88872 0.89924 0.86384 0.86287 0.86312 0.86092 0.85152 0.77170 0.91940 0.92023 0.92847 0.92807 0.96241 0.96250 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.20 59.85 0.61 1.26 16 2 N -0.63 -7.46 2.86 -188.74 -0.54 -8.00 16 3 C 0.17 1.80 5.53 -5.20 -0.03 1.77 16 4 C -0.11 -1.17 5.46 -104.63 -0.57 -1.74 16 5 C -0.11 -1.00 9.70 -39.58 -0.38 -1.39 16 6 C -0.13 -1.15 10.05 -39.58 -0.40 -1.54 16 7 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 8 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 9 C -0.09 -1.12 9.70 -39.58 -0.38 -1.50 16 10 C 0.70 11.15 8.28 -86.92 -0.72 10.43 16 11 O -0.59 -11.42 15.45 5.29 0.08 -11.34 16 12 N -0.74 -11.32 5.42 -65.22 -0.35 -11.67 16 13 C 0.13 2.46 5.67 -4.04 -0.02 2.43 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 26 H 0.07 0.54 6.36 -51.93 -0.33 0.21 16 27 H 0.09 1.10 7.36 -51.93 -0.38 0.72 16 28 H 0.08 0.61 8.01 -51.93 -0.42 0.20 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 31 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.13 1.78 7.58 -52.49 -0.40 1.38 16 34 H 0.39 4.94 6.20 -40.82 -0.25 4.69 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -33.42 346.25 -9.65 -43.07 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.39 Total: 1.47 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.38 Total: -9.05 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.16 Total: -45.92 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.42 -9.65 -43.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170887502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.960 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds