Wall clock time and date at job start Mon Mar 30 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47068 * 2 1 4 4 C 1.34779 * 119.99920 * 95.78027 * 3 2 1 5 5 O 1.21284 * 120.00421 * 186.04234 * 4 3 2 6 6 C 1.50708 * 119.99909 * 6.03785 * 4 3 2 7 7 H 1.09000 * 109.47011 * 32.94032 * 6 4 3 8 8 N 1.46899 * 109.46982 * 152.94103 * 6 4 3 9 9 C 1.52999 * 109.46909 * 272.94076 * 6 4 3 10 10 C 1.52999 * 109.46866 * 174.71280 * 9 6 4 11 11 C 1.50700 * 109.47375 * 179.97438 * 10 9 6 12 12 H 1.08002 * 119.99701 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00464 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99876 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47215 * 89.99981 * 15 13 11 17 17 H 1.48500 * 109.47004 * 209.99996 * 15 13 11 18 18 H 1.48501 * 109.47129 * 329.99717 * 15 13 11 19 19 C 1.39919 * 120.00317 * 275.77921 * 3 2 1 20 20 C 1.38868 * 120.07230 * 187.26010 * 19 3 2 21 21 C 1.38117 * 119.93009 * 179.78902 * 20 19 3 22 22 C 1.38279 * 120.07008 * 0.48565 * 21 20 19 23 23 C 1.38286 * 120.13956 * 359.74659 * 22 21 20 24 24 C 1.38114 * 120.07102 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47426 * 186.20072 * 1 2 3 26 26 H 1.09002 * 109.47251 * 306.20430 * 1 2 3 27 27 H 1.09008 * 109.47151 * 66.19734 * 1 2 3 28 28 H 1.08999 * 109.47038 * 240.00378 * 2 1 3 29 29 H 1.08997 * 109.46795 * 119.99936 * 2 1 3 30 30 H 1.00904 * 110.99752 * 296.04763 * 8 6 4 31 31 H 1.00903 * 111.00175 * 60.00104 * 8 6 4 32 32 H 1.09002 * 109.47250 * 294.71123 * 9 6 4 33 33 H 1.08996 * 109.47565 * 54.71004 * 9 6 4 34 34 H 1.09002 * 109.47058 * 299.99960 * 10 9 6 35 35 H 1.09008 * 109.47559 * 59.99733 * 10 9 6 36 36 H 0.96998 * 120.00128 * 180.02562 * 14 13 11 37 37 H 1.08003 * 120.03467 * 0.02589 * 20 19 3 38 38 H 1.08000 * 119.96631 * 180.22905 * 21 20 19 39 39 H 1.07996 * 119.93408 * 179.72085 * 22 21 20 40 40 H 1.07999 * 119.96435 * 179.97438 * 23 22 21 41 41 H 1.08005 * 120.03416 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3538 1.9774 1.1613 5 8 2.6529 3.1527 1.1754 6 6 2.3570 1.1836 2.4424 7 1 2.6465 0.1542 2.2312 8 7 3.3147 1.7781 3.3843 9 6 0.9566 1.2035 3.0582 10 6 0.9265 0.2913 4.2861 11 6 -0.4527 0.3113 4.8932 12 1 -1.2301 0.9141 4.4474 13 6 -0.7223 -0.4406 6.0169 14 7 0.2242 -1.1750 6.5594 15 14 -2.4321 -0.4163 6.7689 16 1 -3.2573 -1.4886 6.1570 17 1 -2.3322 -0.6431 8.2330 18 1 -3.0661 0.9023 6.5145 19 6 2.1365 2.0815 -1.2055 20 6 2.7384 3.3328 -1.2273 21 6 2.8575 4.0196 -2.4197 22 6 2.3690 3.4670 -3.5893 23 6 1.7648 2.2233 -3.5702 24 6 1.6469 1.5293 -2.3819 25 1 -0.3634 -1.0216 0.1110 26 1 -0.3634 0.6070 0.8292 27 1 -0.3634 0.4148 -0.9403 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.2569 1.7185 3.0280 31 1 3.0680 2.7333 3.5962 32 1 0.7049 2.2215 3.3556 33 1 0.2321 0.8497 2.3248 34 1 1.1782 -0.7267 3.9887 35 1 1.6511 0.6452 5.0196 36 1 0.0344 -1.7043 7.3498 37 1 3.1166 3.7667 -0.3134 38 1 3.3288 4.9912 -2.4378 39 1 2.4592 4.0079 -4.5197 40 1 1.3839 1.7945 -4.4853 41 1 1.1744 0.5582 -2.3676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424085783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:57 Heat of formation + Delta-G solvation = -1.085784 kcal Electronic energy + Delta-G solvation = -21571.232838 eV Core-core repulsion = 18451.286075 eV Total energy + Delta-G solvation = -3119.946763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04999 -38.57341 -36.25662 -35.43887 -32.87861 -31.46619 -30.77023 -30.14786 -29.47683 -26.50782 -24.14740 -23.84351 -22.57266 -21.79351 -20.48851 -19.16979 -17.63066 -17.33741 -16.41571 -16.07525 -15.59617 -15.26406 -14.98681 -14.43429 -14.32843 -14.16675 -13.75291 -13.52649 -13.21160 -12.99333 -12.61273 -12.43555 -12.20396 -11.98711 -11.79714 -11.63443 -11.23489 -11.06549 -10.84515 -10.60372 -10.56791 -10.29230 -9.83658 -9.66496 -9.40978 -9.03615 -8.95670 -8.40020 -8.25649 -7.92469 -5.96840 -3.99133 1.24990 1.39683 2.58510 2.79108 3.32582 3.39529 3.42899 3.84537 4.39824 4.49474 4.72600 4.83960 4.89872 4.92667 5.10727 5.15733 5.21165 5.37863 5.38970 5.42081 5.49460 5.54020 5.73041 5.77997 5.82322 6.01652 6.08246 6.22666 6.36286 6.49445 6.53301 6.56839 6.63434 7.04219 7.12430 7.22468 7.36621 7.68332 7.72034 7.91407 8.06706 8.08963 8.44651 9.08522 9.64362 11.13973 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.004009 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.459799 B = 6983.461584 C = 7448.521711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 N -0.550 5.550 4 C 0.483 3.517 5 O -0.526 6.526 6 C 0.080 3.920 7 H 0.102 0.898 8 N -0.806 5.806 9 C -0.103 4.103 10 C 0.033 3.967 11 C -0.522 4.522 12 H 0.052 0.948 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.158 3.842 20 C -0.166 4.166 21 C -0.099 4.099 22 C -0.154 4.154 23 C -0.099 4.099 24 C -0.164 4.164 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.334 0.666 31 H 0.350 0.650 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.013 0.987 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.174 0.826 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 3.766 -18.733 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 N -0.273 5.273 4 C 0.273 3.727 5 O -0.403 6.403 6 C -0.036 4.036 7 H 0.119 0.881 8 N -0.334 5.334 9 C -0.141 4.141 10 C -0.004 4.004 11 C -0.561 4.561 12 H 0.070 0.930 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.200 1.200 19 C 0.063 3.937 20 C -0.186 4.186 21 C -0.118 4.118 22 C -0.173 4.173 23 C -0.118 4.118 24 C -0.184 4.184 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.190 0.810 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.083 3.647 -17.930 18.990 hybrid contribution -0.854 0.532 -0.542 1.143 sum 4.229 4.179 -18.472 19.406 Atomic orbital electron populations 1.22381 0.94525 1.03707 1.03171 1.21913 0.95868 0.80792 1.04409 1.45919 1.61740 1.14519 1.05086 1.23110 0.74776 0.88522 0.86289 1.90361 1.48053 1.16337 1.85570 1.21970 0.98185 0.97639 0.85786 0.88080 1.59012 1.04328 1.26104 1.43936 1.21862 0.89683 1.02317 1.00255 1.19002 0.97068 0.93268 0.91054 1.21251 0.96607 1.26879 1.11336 0.92998 1.24977 0.96743 0.95571 0.96945 1.69968 1.32293 1.28991 1.21870 0.86661 0.84937 0.78314 0.78472 1.20760 1.21247 1.19966 1.18135 0.97191 0.92845 0.85507 1.22503 1.00602 0.94244 1.01228 1.21143 0.98820 0.99563 0.92272 1.21088 1.01554 0.96422 0.98231 1.20879 0.98863 0.94882 0.97133 1.20889 1.04272 1.01486 0.91775 0.90462 0.90598 0.92354 0.89914 0.88192 0.85398 0.83585 0.92672 0.92002 0.96873 0.94673 0.93074 0.80971 0.86125 0.86503 0.86075 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.77 37.16 0.36 -1.70 16 2 C 0.09 1.04 5.23 -4.04 -0.02 1.02 16 3 N -0.55 -7.60 2.70 -113.46 -0.31 -7.91 16 4 C 0.48 7.64 6.76 -10.98 -0.07 7.57 16 5 O -0.53 -9.26 12.82 5.55 0.07 -9.19 16 6 C 0.08 1.30 2.38 -68.86 -0.16 1.13 16 7 H 0.10 1.53 6.14 -51.93 -0.32 1.22 16 8 N -0.81 -13.02 8.52 -5.65 -0.05 -13.06 16 9 C -0.10 -2.03 4.74 -26.73 -0.13 -2.15 16 10 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 11 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 12 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 15 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.16 2.20 6.47 -83.70 -0.54 1.66 16 20 C -0.17 -2.40 8.98 -39.39 -0.35 -2.75 16 21 C -0.10 -1.20 10.04 -39.61 -0.40 -1.60 16 22 C -0.15 -1.64 10.04 -39.55 -0.40 -2.04 16 23 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 24 C -0.16 -1.91 8.72 -39.39 -0.34 -2.25 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.06 5.47 -51.93 -0.28 0.77 16 27 H 0.06 0.62 6.94 -51.92 -0.36 0.26 16 28 H 0.08 0.75 6.90 -51.93 -0.36 0.39 16 29 H 0.10 1.13 5.59 -51.93 -0.29 0.84 16 30 H 0.33 4.60 9.06 -39.29 -0.36 4.25 16 31 H 0.35 5.72 8.55 -39.29 -0.34 5.38 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.14 4.86 -51.93 -0.25 0.89 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.03 0.95 7.76 -51.92 -0.40 0.55 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.17 2.78 4.71 -55.23 -0.26 2.52 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.13 1.23 5.67 -52.48 -0.30 0.93 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -31.43 327.11 -8.23 -39.66 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.59 Total: 9.90 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -3.00 Total: -15.07 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.38 Total: -46.67 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.43 -8.23 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424085783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.578 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds