Wall clock time and date at job start Mon Mar 30 2020 02:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35898 * 116.99792 * 2 1 4 4 C 1.38735 * 120.05504 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94366 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05659 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94394 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.50708 * 340.05682 * 7 6 5 9 9 C 1.53055 * 109.48925 * 100.11155 * 7 6 5 10 10 N 1.46956 * 109.36416 * 178.36796 * 9 7 6 11 11 C 1.46899 * 110.99902 * 176.81045 * 10 9 7 12 12 C 1.50701 * 109.47044 * 189.84755 * 11 10 9 13 13 H 1.07999 * 120.00312 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99930 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99888 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99964 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47315 * 90.00185 * 16 14 12 18 18 H 1.48504 * 109.46939 * 210.00271 * 16 14 12 19 19 H 1.48503 * 109.47205 * 329.99768 * 16 14 12 20 20 C 1.46950 * 110.88187 * 300.68087 * 10 9 7 21 21 C 1.53051 * 109.36695 * 59.32281 * 20 10 9 22 22 N 1.46956 * 109.36265 * 301.59619 * 21 20 10 23 23 C 1.38263 * 120.11315 * 0.25622 * 6 5 4 24 24 C 1.38145 * 120.05364 * 359.44884 * 23 6 5 25 25 H 1.09000 * 109.47411 * 60.00490 * 1 2 3 26 26 H 1.09003 * 109.47322 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47675 * 300.00078 * 1 2 3 28 28 H 1.08002 * 120.02458 * 359.97438 * 4 3 2 29 29 H 1.08010 * 119.96978 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.48838 * 58.40306 * 9 7 6 31 31 H 1.09003 * 109.50210 * 298.34602 * 9 7 6 32 32 H 1.08997 * 109.47297 * 309.84656 * 11 10 9 33 33 H 1.08998 * 109.47016 * 69.84653 * 11 10 9 34 34 H 0.96999 * 120.00113 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.48721 * 299.35316 * 20 10 9 36 36 H 1.09004 * 109.49418 * 179.28931 * 20 10 9 37 37 H 1.09000 * 109.49282 * 181.63575 * 21 20 10 38 38 H 1.08993 * 109.51041 * 61.57601 * 21 20 10 39 39 H 1.00894 * 111.00175 * 183.18707 * 22 21 20 40 40 H 1.07999 * 119.97189 * 179.70300 * 23 6 5 41 41 H 1.07995 * 120.03137 * 180.25118 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0559 2.5169 0.0011 6 6 3.3017 3.6758 0.0016 7 6 3.9859 5.0185 0.0028 8 1 5.0116 4.9041 0.3535 9 6 3.9925 5.5895 -1.4173 10 7 4.6252 6.9158 -1.4062 11 6 4.7189 7.4657 -2.7652 12 6 5.5803 8.7021 -2.7485 13 1 6.0145 9.0454 -1.8211 14 6 5.8134 9.3958 -3.9171 15 7 5.2836 8.9787 -5.0462 16 14 6.8806 10.9287 -3.8963 17 1 8.2969 10.5492 -4.1312 18 1 6.4333 11.8578 -4.9650 19 1 6.7599 11.5981 -2.5762 20 6 3.9020 7.8338 -0.5153 21 6 3.8954 7.2629 0.9047 22 7 3.2626 5.9366 0.8937 23 6 1.9210 3.6048 0.0070 24 6 1.2914 2.3751 0.0003 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 4.0207 0.3799 0.0014 29 1 5.1345 2.5750 0.0011 30 1 2.9679 5.6784 -1.7782 31 1 4.5532 4.9245 -2.0743 32 1 5.1625 6.7228 -3.4280 33 1 3.7218 7.7224 -3.1228 34 1 5.4472 9.4668 -5.8683 35 1 2.8763 7.9482 -0.8661 36 1 4.3968 8.8051 -0.5144 37 1 3.3346 7.9279 1.5615 38 1 4.9199 7.1740 1.2661 39 1 3.1983 5.5589 1.8271 40 1 1.3341 4.5114 0.0122 41 1 0.2128 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879519483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:59 Heat of formation + Delta-G solvation = -2.769734 kcal Electronic energy + Delta-G solvation = -21100.909755 eV Core-core repulsion = 17980.889971 eV Total energy + Delta-G solvation = -3120.019784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25701 -38.77570 -37.12040 -34.23299 -32.23544 -31.69038 -31.04857 -28.77256 -27.49863 -27.18942 -24.58076 -23.16183 -22.68382 -21.81036 -20.59582 -19.06845 -18.21929 -16.46994 -16.32732 -16.27822 -15.86899 -15.06791 -14.60314 -14.37037 -14.32688 -14.05243 -13.65162 -13.51334 -13.34786 -13.16782 -12.73654 -12.61932 -12.08147 -11.95734 -11.56180 -11.27539 -11.10779 -10.89531 -10.81957 -10.72403 -10.63269 -10.38257 -10.28065 -9.73791 -9.19983 -8.97179 -8.43445 -8.25064 -8.07696 -7.22358 -6.01829 -4.03401 1.35670 1.43801 3.15233 3.32482 3.38294 3.41581 3.75609 4.37894 4.43400 4.75245 4.85294 4.86058 4.93772 4.99811 5.16523 5.23783 5.33973 5.42366 5.44594 5.50474 5.57288 5.70399 5.78155 5.91759 5.98416 6.06638 6.12187 6.28864 6.38269 6.48145 6.57650 6.68988 6.73723 6.77169 7.18113 7.31064 7.35611 7.39447 7.57567 7.80799 8.09987 8.21918 8.55751 9.04079 9.60728 11.09073 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032186 B = 0.003446 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.744896 B = 8124.512353 C = 8489.778384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.155 4.155 5 C -0.073 4.073 6 C -0.112 4.112 7 C 0.135 3.865 8 H 0.052 0.948 9 C 0.068 3.932 10 N -0.539 5.539 11 C 0.194 3.806 12 C -0.507 4.507 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.065 3.935 21 C 0.060 3.940 22 N -0.685 5.685 23 C -0.051 4.051 24 C -0.212 4.212 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.029 0.971 33 H -0.009 1.009 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.335 0.665 40 H 0.134 0.866 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 -14.327 12.532 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.074 3.926 4 C -0.173 4.173 5 C -0.092 4.092 6 C -0.113 4.113 7 C 0.025 3.975 8 H 0.070 0.930 9 C -0.061 4.061 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.546 4.546 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.063 4.063 21 C -0.069 4.069 22 N -0.316 5.316 23 C -0.069 4.069 24 C -0.231 4.231 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.246 -14.325 12.026 20.441 hybrid contribution 0.238 0.842 -0.003 0.875 sum -8.008 -13.483 12.023 19.760 Atomic orbital electron populations 1.23018 0.78625 1.03644 1.01400 1.86040 1.21222 1.27278 1.88980 1.19047 0.92393 0.84003 0.97141 1.20335 0.91273 0.98448 1.07290 1.20891 0.99929 0.90953 0.97404 1.19797 0.93845 0.94365 1.03280 1.20376 0.94456 0.88029 0.94663 0.93017 1.22057 0.97571 0.92702 0.93752 1.62264 1.49476 1.01133 1.13506 1.19697 0.95711 0.95068 0.82611 1.21151 1.30015 1.09118 0.94298 0.91912 1.24996 0.96224 0.97956 0.95457 1.69962 1.44740 1.40199 0.98882 0.86499 0.80589 0.82674 0.77637 1.20646 1.21328 1.19870 1.22008 0.96492 0.97090 0.90743 1.22071 0.96897 0.89721 0.98247 1.60547 1.54189 1.03378 1.13466 1.20891 0.94186 0.96999 0.94862 1.21250 0.99834 0.92425 1.09592 0.92642 0.88483 0.92753 0.85447 0.85333 0.95136 0.91153 0.95246 0.99081 0.92923 0.95399 0.89619 0.91034 0.94609 0.84803 0.84842 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.66 10.50 -19.42 -0.20 -3.86 16 3 C 0.12 1.47 6.69 -39.21 -0.26 1.20 16 4 C -0.15 -1.88 9.99 -39.43 -0.39 -2.28 16 5 C -0.07 -0.92 9.66 -39.61 -0.38 -1.30 16 6 C -0.11 -1.52 4.90 -104.60 -0.51 -2.04 16 7 C 0.13 2.06 2.79 -68.80 -0.19 1.87 16 8 H 0.05 0.81 8.00 -51.93 -0.42 0.40 16 9 C 0.07 1.29 4.87 -3.77 -0.02 1.27 16 10 N -0.54 -11.85 4.70 -235.91 -1.11 -12.96 16 11 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 12 C -0.51 -14.32 8.47 -34.44 -0.29 -14.61 16 13 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 16 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.07 1.29 5.43 -3.77 -0.02 1.27 16 21 C 0.06 0.93 6.72 -3.77 -0.03 0.90 16 22 N -0.68 -9.79 5.77 -107.81 -0.62 -10.41 16 23 C -0.05 -0.67 9.32 -39.61 -0.37 -1.04 16 24 C -0.21 -2.52 9.04 -39.43 -0.36 -2.87 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.13 1.42 8.04 -52.48 -0.42 1.00 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 33 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.80 6.78 -51.93 -0.35 1.45 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.33 4.07 8.82 -39.30 -0.35 3.72 16 40 H 0.13 1.76 7.70 -52.49 -0.40 1.36 16 41 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -31.00 332.35 -9.53 -40.53 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.37 Total: 1.01 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.95 Total: -9.81 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -1.00 Total: -49.55 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.20 Total: -3.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.00 -9.53 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879519483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.761 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds