Wall clock time and date at job start Mon Mar 30 2020 01:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46904 * 2 1 4 4 C 1.38869 * 119.99706 * 179.97438 * 3 2 1 5 5 C 1.38960 * 120.17836 * 354.43629 * 4 3 2 6 6 C 1.37956 * 120.06363 * 180.23335 * 5 4 3 7 7 C 1.38610 * 120.42419 * 359.48827 * 6 5 4 8 8 C 1.50700 * 119.82345 * 180.28323 * 7 6 5 9 9 C 1.37752 * 120.35143 * 0.51494 * 7 6 5 10 10 C 1.39733 * 119.92262 * 359.74353 * 9 7 6 11 11 C 1.47443 * 120.20180 * 180.02562 * 10 9 7 12 12 O 1.21602 * 119.99613 * 185.89216 * 11 10 9 13 13 N 1.34767 * 120.00145 * 5.89944 * 11 10 9 14 14 C 1.46504 * 120.00316 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.46412 * 324.99550 * 14 13 11 16 16 C 1.52992 * 109.47170 * 84.99426 * 14 13 11 17 17 C 1.50695 * 109.47182 * 204.99993 * 14 13 11 18 18 H 1.08002 * 120.00305 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99879 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00167 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00131 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47020 * 89.99749 * 21 19 17 23 23 H 1.48495 * 109.47195 * 209.99807 * 21 19 17 24 24 H 1.48497 * 109.47064 * 329.99977 * 21 19 17 25 25 H 1.09008 * 109.47091 * 60.00024 * 1 2 3 26 26 H 1.08998 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47430 * 300.00343 * 1 2 3 28 28 H 1.08994 * 109.47007 * 239.99870 * 2 1 3 29 29 H 1.09003 * 109.46683 * 119.99792 * 2 1 3 30 30 H 0.97001 * 119.99962 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.96417 * 359.96197 * 5 4 3 32 32 H 1.08000 * 119.78370 * 179.73006 * 6 5 4 33 33 H 1.09006 * 109.46868 * 270.23260 * 8 7 6 34 34 H 1.08996 * 109.46975 * 30.23142 * 8 7 6 35 35 H 1.08996 * 109.46905 * 150.23392 * 8 7 6 36 36 H 1.07995 * 120.03396 * 179.76699 * 9 7 6 37 37 H 0.97005 * 120.00110 * 359.97438 * 13 11 10 38 38 H 1.08997 * 109.47728 * 300.00821 * 16 14 13 39 39 H 1.09006 * 109.46624 * 60.00572 * 16 14 13 40 40 H 1.09002 * 109.47179 * 180.02562 * 16 14 13 41 41 H 0.96994 * 120.00014 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3836 1.6350 0.0005 5 6 4.2888 0.5872 0.1175 6 6 5.6445 0.8424 0.1226 7 6 6.1149 2.1406 0.0009 8 6 7.5988 2.4032 0.0017 9 6 5.2330 3.1923 -0.1160 10 6 3.8566 2.9510 -0.1175 11 6 2.9072 4.0721 -0.2429 12 8 1.7125 3.8718 -0.1364 13 7 3.3634 5.3187 -0.4756 14 6 2.4200 6.4325 -0.6007 15 1 1.5085 6.0837 -1.0861 16 6 2.0824 6.9736 0.7899 17 6 3.0424 7.5274 -1.4283 18 1 4.0410 7.4059 -1.8214 19 6 2.3370 8.6842 -1.6837 20 7 1.1208 8.8320 -1.2054 21 14 3.1087 10.0417 -2.7089 22 1 2.7864 9.8237 -4.1420 23 1 2.5711 11.3562 -2.2750 24 1 4.5821 10.0243 -2.5248 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3879 2.1185 -0.0004 31 1 3.9305 -0.4276 0.2090 32 1 6.3440 0.0250 0.2182 33 1 7.9385 2.5652 1.0247 34 1 8.1199 1.5451 -0.4227 35 1 7.8112 3.2895 -0.5962 36 1 5.6050 4.2021 -0.2068 37 1 4.3165 5.4785 -0.5603 38 1 1.6323 6.1817 1.3886 39 1 2.9940 7.3224 1.2752 40 1 1.3801 7.8020 0.6968 41 1 0.6245 9.6456 -1.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895981212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:33 Heat of formation + Delta-G solvation = -22.178074 kcal Electronic energy + Delta-G solvation = -21316.036218 eV Core-core repulsion = 18195.174825 eV Total energy + Delta-G solvation = -3120.861393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01665 -38.00530 -36.30139 -34.73724 -32.52294 -32.29613 -30.98188 -29.60554 -28.45405 -25.57090 -25.24857 -23.84230 -23.03313 -21.10731 -20.40561 -19.41277 -17.60798 -16.78108 -16.18258 -15.45908 -15.18338 -15.06514 -14.64717 -14.20379 -13.97550 -13.89978 -13.69457 -13.44560 -12.89795 -12.43393 -12.33212 -12.31625 -12.00898 -11.80547 -11.71664 -11.58789 -11.37381 -11.06513 -10.97412 -10.95703 -10.73276 -10.29315 -10.22877 -9.71339 -9.06352 -8.99894 -8.78075 -8.54424 -7.93648 -7.08629 -6.11951 -4.21025 1.26038 1.77077 3.25318 3.31823 3.33827 3.44384 3.71609 4.13526 4.29326 4.40541 4.95578 4.99729 5.03286 5.06784 5.19473 5.21088 5.30914 5.38469 5.58560 5.66825 5.71429 5.76127 5.82594 5.88441 6.02375 6.09016 6.12825 6.37899 6.45972 6.78676 6.83647 6.97454 7.00093 7.15543 7.42164 7.52589 7.60594 7.71466 7.92102 8.11118 8.23163 8.67650 8.78722 9.14748 9.46558 10.94114 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.004870 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.262965 B = 5748.544347 C = 7052.221719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.729 5.729 4 C 0.268 3.732 5 C -0.215 4.215 6 C -0.050 4.050 7 C -0.166 4.166 8 C -0.102 4.102 9 C -0.035 4.035 10 C -0.212 4.212 11 C 0.557 3.443 12 O -0.567 6.567 13 N -0.700 5.700 14 C 0.264 3.736 15 H 0.049 0.951 16 C -0.146 4.146 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.422 0.578 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.389 0.611 38 H 0.015 0.985 39 H 0.026 0.974 40 H 0.090 0.910 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 -16.084 2.967 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.369 5.369 4 C 0.158 3.842 5 C -0.238 4.238 6 C -0.069 4.069 7 C -0.168 4.168 8 C -0.159 4.159 9 C -0.054 4.054 10 C -0.220 4.220 11 C 0.345 3.655 12 O -0.449 6.449 13 N -0.346 5.346 14 C 0.162 3.838 15 H 0.067 0.933 16 C -0.205 4.205 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.273 0.727 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.223 0.777 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.109 0.891 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.114 -16.159 3.033 17.541 hybrid contribution 0.624 1.052 -0.563 1.346 sum 6.738 -15.107 2.470 16.725 Atomic orbital electron populations 1.21945 0.94605 1.02431 1.03152 1.21307 0.94813 0.84414 1.00598 1.45809 1.04427 1.08691 1.78013 1.17797 0.84794 0.91879 0.89748 1.20570 0.92892 0.97721 1.12571 1.20829 0.94584 0.95951 0.95517 1.19480 0.95691 0.93057 1.08618 1.20625 0.91678 1.01882 1.01697 1.20992 0.91277 0.98740 0.94383 1.19614 0.93997 0.92519 1.15908 1.18058 0.87441 0.83102 0.76870 1.90311 1.16862 1.83317 1.54452 1.46409 1.11202 1.07615 1.69361 1.18771 0.89090 0.82207 0.93715 0.93282 1.22073 1.00528 1.00921 0.96980 1.21215 1.01910 1.01065 1.32991 0.92068 1.24883 0.94819 0.98227 0.95742 1.69902 1.10484 1.27419 1.44321 0.86441 0.79386 0.80943 0.80297 1.20564 1.21074 1.19809 0.91789 0.91238 0.91865 0.92573 0.92610 0.72745 0.86049 0.86353 0.92019 0.92231 0.91891 0.85770 0.77717 0.96634 0.95451 0.89130 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.03 37.16 0.37 -1.32 16 2 C 0.11 1.32 5.66 -4.04 -0.02 1.30 16 3 N -0.73 -11.56 5.59 -58.45 -0.33 -11.89 16 4 C 0.27 4.35 6.65 -83.61 -0.56 3.80 16 5 C -0.21 -2.85 9.30 -39.42 -0.37 -3.22 16 6 C -0.05 -0.60 9.68 -39.55 -0.38 -0.98 16 7 C -0.17 -2.13 5.87 -104.66 -0.61 -2.75 16 8 C -0.10 -1.01 10.00 36.01 0.36 -0.65 16 9 C -0.03 -0.52 9.16 -39.20 -0.36 -0.88 16 10 C -0.21 -3.75 5.89 -104.80 -0.62 -4.37 16 11 C 0.56 11.86 7.71 -12.52 -0.10 11.77 16 12 O -0.57 -13.43 13.31 5.28 0.07 -13.36 16 13 N -0.70 -15.22 5.02 -56.01 -0.28 -15.50 16 14 C 0.26 6.82 2.56 -69.09 -0.18 6.64 16 15 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.70 9.26 37.15 0.34 -3.35 16 17 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -24.99 11.32 55.43 0.63 -24.36 16 21 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.06 0.58 7.73 -51.93 -0.40 0.18 16 30 H 0.42 7.75 4.98 -40.94 -0.20 7.55 16 31 H 0.12 1.34 6.72 -52.48 -0.35 0.99 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.12 1.71 6.45 -52.49 -0.34 1.37 16 37 H 0.39 7.45 6.60 -40.82 -0.27 7.18 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -30.24 335.27 -8.43 -38.66 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.04 Total: 12.57 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.51 Total: -6.89 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.02 Total: -51.75 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.24 -8.43 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895981212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.487 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds