Wall clock time and date at job start Mon Mar 30 2020 01:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46904 * 2 1 4 4 C 1.38869 * 119.99706 * 179.97438 * 3 2 1 5 5 C 1.38960 * 120.17836 * 354.43629 * 4 3 2 6 6 C 1.37956 * 120.06363 * 180.23335 * 5 4 3 7 7 C 1.38610 * 120.42419 * 359.48827 * 6 5 4 8 8 C 1.50700 * 119.82345 * 180.28323 * 7 6 5 9 9 C 1.37752 * 120.35143 * 0.51494 * 7 6 5 10 10 C 1.39733 * 119.92262 * 359.74353 * 9 7 6 11 11 C 1.47443 * 120.20180 * 180.02562 * 10 9 7 12 12 O 1.21602 * 119.99613 * 185.89216 * 11 10 9 13 13 N 1.34767 * 120.00145 * 5.89944 * 11 10 9 14 14 C 1.46504 * 120.00316 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.46412 * 324.99550 * 14 13 11 16 16 C 1.52992 * 109.47170 * 84.99426 * 14 13 11 17 17 C 1.50695 * 109.47182 * 204.99993 * 14 13 11 18 18 H 1.08002 * 120.00305 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99879 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00167 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00131 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47020 * 89.99749 * 21 19 17 23 23 H 1.48495 * 109.47195 * 209.99807 * 21 19 17 24 24 H 1.48497 * 109.47064 * 329.99977 * 21 19 17 25 25 H 1.09008 * 109.47091 * 60.00024 * 1 2 3 26 26 H 1.08998 * 109.47232 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47430 * 300.00343 * 1 2 3 28 28 H 1.08994 * 109.47007 * 239.99870 * 2 1 3 29 29 H 1.09003 * 109.46683 * 119.99792 * 2 1 3 30 30 H 0.97001 * 119.99962 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.96417 * 359.96197 * 5 4 3 32 32 H 1.08000 * 119.78370 * 179.73006 * 6 5 4 33 33 H 1.09006 * 109.46868 * 270.23260 * 8 7 6 34 34 H 1.08996 * 109.46975 * 30.23142 * 8 7 6 35 35 H 1.08996 * 109.46905 * 150.23392 * 8 7 6 36 36 H 1.07995 * 120.03396 * 179.76699 * 9 7 6 37 37 H 0.97005 * 120.00110 * 359.97438 * 13 11 10 38 38 H 1.08997 * 109.47728 * 300.00821 * 16 14 13 39 39 H 1.09006 * 109.46624 * 60.00572 * 16 14 13 40 40 H 1.09002 * 109.47179 * 180.02562 * 16 14 13 41 41 H 0.96994 * 120.00014 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3836 1.6350 0.0005 5 6 4.2888 0.5872 0.1175 6 6 5.6445 0.8424 0.1226 7 6 6.1149 2.1406 0.0009 8 6 7.5988 2.4032 0.0017 9 6 5.2330 3.1923 -0.1160 10 6 3.8566 2.9510 -0.1175 11 6 2.9072 4.0721 -0.2429 12 8 1.7125 3.8718 -0.1364 13 7 3.3634 5.3187 -0.4756 14 6 2.4200 6.4325 -0.6007 15 1 1.5085 6.0837 -1.0861 16 6 2.0824 6.9736 0.7899 17 6 3.0424 7.5274 -1.4283 18 1 4.0410 7.4059 -1.8214 19 6 2.3370 8.6842 -1.6837 20 7 1.1208 8.8320 -1.2054 21 14 3.1087 10.0417 -2.7089 22 1 2.7864 9.8237 -4.1420 23 1 2.5711 11.3562 -2.2750 24 1 4.5821 10.0243 -2.5248 25 1 -0.3634 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3879 2.1185 -0.0004 31 1 3.9305 -0.4276 0.2090 32 1 6.3440 0.0250 0.2182 33 1 7.9385 2.5652 1.0247 34 1 8.1199 1.5451 -0.4227 35 1 7.8112 3.2895 -0.5962 36 1 5.6050 4.2021 -0.2068 37 1 4.3165 5.4785 -0.5603 38 1 1.6323 6.1817 1.3886 39 1 2.9940 7.3224 1.2752 40 1 1.3801 7.8020 0.6968 41 1 0.6245 9.6456 -1.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895981212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:32 Heat of formation + Delta-G solvation = -41.006154 kcal Electronic energy + Delta-G solvation = -21316.852665 eV Core-core repulsion = 18195.174825 eV Total energy + Delta-G solvation = -3121.677840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36271 -39.46362 -37.42475 -36.57526 -34.40434 -33.31245 -32.32681 -30.75319 -30.06973 -27.36934 -26.53827 -25.06121 -24.24586 -22.61629 -21.65127 -21.11272 -19.14929 -18.05513 -17.71893 -17.18900 -16.63817 -16.26643 -16.12701 -15.67681 -15.36789 -14.95049 -14.80140 -14.54937 -14.44838 -14.25099 -13.72844 -13.33522 -13.15148 -13.00656 -12.90146 -12.89584 -12.80598 -12.68162 -12.56755 -12.30798 -12.27908 -12.12874 -11.95233 -11.14023 -10.73745 -10.67767 -10.56702 -10.01188 -9.70025 -8.21879 -8.19020 -6.36997 0.07934 0.69800 1.44110 1.44824 1.55815 2.02875 2.34666 2.62041 2.65484 3.02740 3.11572 3.89522 3.93572 4.10185 4.13757 4.19694 4.43706 4.48641 4.54351 4.61322 4.72224 4.83729 4.88622 4.91723 5.01178 5.01581 5.05964 5.09575 5.19126 5.21547 5.34684 5.40037 5.43953 5.57547 5.66210 5.77194 5.88256 6.00439 6.06340 6.50534 6.67894 6.84656 6.93348 7.30946 7.53651 8.87303 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.004870 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.262965 B = 5748.544347 C = 7052.221719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 N -0.745 5.745 4 C 0.250 3.750 5 C -0.212 4.212 6 C -0.037 4.037 7 C -0.164 4.164 8 C -0.101 4.101 9 C -0.043 4.043 10 C -0.246 4.246 11 C 0.550 3.450 12 O -0.602 6.602 13 N -0.699 5.699 14 C 0.271 3.729 15 H 0.000 1.000 16 C -0.132 4.132 17 C -0.548 4.548 18 H 0.072 0.928 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.974 3.026 22 H -0.278 1.278 23 H -0.282 1.282 24 H -0.259 1.259 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.407 0.593 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.402 0.598 38 H 0.010 0.990 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -17.847 2.809 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.014 4.014 3 N -0.382 5.382 4 C 0.139 3.861 5 C -0.234 4.234 6 C -0.056 4.056 7 C -0.166 4.166 8 C -0.158 4.158 9 C -0.062 4.062 10 C -0.254 4.254 11 C 0.341 3.659 12 O -0.486 6.486 13 N -0.347 5.347 14 C 0.168 3.832 15 H 0.017 0.983 16 C -0.191 4.191 17 C -0.586 4.586 18 H 0.090 0.910 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.798 3.202 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.183 1.183 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.254 0.746 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.238 0.762 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.089 -17.969 2.880 20.342 hybrid contribution -0.285 1.463 -0.489 1.569 sum 8.803 -16.506 2.392 18.859 Atomic orbital electron populations 1.21949 0.94058 1.03972 1.01838 1.21555 0.95383 0.82539 1.01950 1.46017 1.04340 1.09849 1.78022 1.18141 0.85461 0.92181 0.90288 1.20897 0.93024 0.97994 1.11493 1.21329 0.94705 0.96750 0.92814 1.19877 0.97027 0.92795 1.06947 1.20688 0.89463 1.02972 1.02637 1.21127 0.90479 0.99933 0.94702 1.19435 0.94341 0.91792 1.19850 1.18736 0.87793 0.83660 0.75691 1.90297 1.18644 1.83942 1.55761 1.46149 1.11192 1.07170 1.70175 1.18373 0.88205 0.83228 0.93386 0.98258 1.21886 1.00382 0.99875 0.96909 1.21520 1.02425 1.01398 1.33302 0.91030 1.25809 0.95180 1.00705 0.96788 1.70051 1.11902 1.28136 1.45438 0.85314 0.79070 0.77534 0.78244 1.20353 1.20763 1.18327 0.93350 0.88173 0.92955 0.91288 0.90777 0.74620 0.83449 0.82362 0.90941 0.90059 0.91788 0.85388 0.76227 0.97055 0.94197 0.91271 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.03 71.98 0.72 -2.54 16 2 C 0.11 2.41 5.66 86.38 0.49 2.90 16 3 N -0.74 -23.99 5.59 -338.82 -1.89 -25.89 16 4 C 0.25 8.00 6.65 38.71 0.26 8.26 16 5 C -0.21 -5.02 9.30 22.38 0.21 -4.81 16 6 C -0.04 -0.75 9.68 22.29 0.22 -0.53 16 7 C -0.16 -3.73 5.87 -19.89 -0.12 -3.84 16 8 C -0.10 -1.61 10.00 71.24 0.71 -0.90 16 9 C -0.04 -1.26 9.16 22.52 0.21 -1.05 16 10 C -0.25 -8.83 5.89 -19.98 -0.12 -8.95 16 11 C 0.55 24.63 7.71 86.67 0.67 25.30 16 12 O -0.60 -30.53 13.31 -4.04 -0.05 -30.58 16 13 N -0.70 -31.71 5.02 -449.38 -2.25 -33.96 16 14 C 0.27 14.71 2.56 44.24 0.11 14.82 16 15 H 0.00 -0.03 7.58 -2.38 -0.02 -0.05 16 16 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 17 C -0.55 -29.91 8.73 25.60 0.22 -29.69 16 18 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 19 C 0.02 0.83 5.30 84.65 0.45 1.28 16 20 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 21 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 29 H 0.07 1.36 7.73 -2.39 -0.02 1.34 16 30 H 0.41 15.84 4.98 -94.59 -0.47 15.37 16 31 H 0.15 2.66 6.72 -2.91 -0.02 2.64 16 32 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 35 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 36 H 0.13 3.46 6.45 -2.91 -0.02 3.44 16 37 H 0.40 15.76 6.60 -92.70 -0.61 15.14 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 41 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -68.82 335.27 2.72 -66.10 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.04 Total: 38.88 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.70 Total: -6.03 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -3.91 Total: -112.99 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.05 Total: -30.58 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -68.82 2.72 -66.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895981212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.096 kcal (2) G-P(sol) polarization free energy of solvation -68.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds