Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46744 * 111.00089 * 2 1 4 4 C 1.53422 * 108.59750 * 285.48704 * 3 2 1 5 5 O 1.43143 * 107.89331 * 296.72534 * 4 3 2 6 6 C 1.36277 * 116.67220 * 45.34798 * 5 4 3 7 7 C 1.38768 * 118.66498 * 165.16166 * 6 5 4 8 8 C 1.38129 * 120.30285 * 179.44729 * 7 6 5 9 9 C 1.38869 * 119.95183 * 0.53497 * 8 7 6 10 10 N 1.39924 * 120.02318 * 179.83848 * 9 8 7 11 11 C 1.46499 * 119.99940 * 359.72244 * 10 9 8 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.38643 * 119.95276 * 359.55576 * 9 8 7 23 23 C 1.38972 * 121.34388 * 345.01099 * 6 5 4 24 24 H 1.09003 * 109.47672 * 185.43210 * 1 2 3 25 25 H 1.09002 * 109.47124 * 305.43846 * 1 2 3 26 26 H 1.09007 * 109.47019 * 65.43579 * 1 2 3 27 27 H 1.09001 * 109.61830 * 45.21949 * 3 2 1 28 28 H 1.08997 * 109.61354 * 165.75719 * 3 2 1 29 29 H 1.09002 * 109.77769 * 56.31891 * 4 3 2 30 30 H 1.08991 * 109.77867 * 177.12133 * 4 3 2 31 31 H 1.07998 * 119.84488 * 359.72700 * 7 6 5 32 32 H 1.08002 * 120.02644 * 180.28743 * 8 7 6 33 33 H 0.97000 * 119.99639 * 179.71674 * 10 9 8 34 34 H 1.09002 * 109.47391 * 59.99872 * 11 10 9 35 35 H 1.09001 * 109.46813 * 299.99928 * 11 10 9 36 36 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 37 37 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 38 38 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 39 39 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 40 40 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.89978 * 180.20021 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3700 0.0000 4 6 1.8078 1.9659 -1.4013 5 8 2.5920 1.1932 -2.3162 6 6 2.5133 -0.1620 -2.1961 7 6 2.9922 -0.9510 -3.2323 8 6 2.9397 -2.3283 -3.1412 9 6 2.3956 -2.9283 -2.0133 10 7 2.3385 -4.3233 -1.9209 11 6 2.8475 -5.1514 -3.0171 12 6 2.6669 -6.6295 -2.6658 13 6 3.1990 -7.4943 -3.8103 14 6 3.0217 -8.9503 -3.4642 15 1 2.5746 -9.2307 -2.5218 16 6 3.4303 -9.9243 -4.3503 17 7 3.9743 -9.5828 -5.4980 18 14 3.2099 -11.7291 -3.9216 19 1 1.7677 -12.0158 -3.7130 20 1 3.7264 -12.5684 -5.0322 21 1 3.9607 -12.0376 -2.6780 22 6 1.9141 -2.1442 -0.9762 23 6 1.9701 -0.7571 -1.0637 24 1 -0.3634 -1.0230 0.0973 25 1 -0.3633 0.5959 0.8373 26 1 -0.3633 0.4272 -0.9347 27 1 1.4509 1.9708 0.7288 28 1 3.0551 1.3549 0.2526 29 1 0.7564 1.9180 -1.6851 30 1 2.1458 3.0020 -1.4096 31 1 3.4120 -0.4860 -4.1121 32 1 3.3180 -2.9381 -3.9484 33 1 1.9621 -4.7421 -1.1311 34 1 3.9059 -4.9407 -3.1705 35 1 2.2960 -4.9251 -3.9296 36 1 3.2181 -6.8561 -1.7532 37 1 1.6085 -6.8399 -2.5127 38 1 2.6482 -7.2680 -4.7232 39 1 4.2576 -7.2838 -3.9630 40 1 4.2613 -10.2681 -6.1216 41 1 1.4940 -2.6117 -0.0980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168437165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = -10.931465 kcal Electronic energy + Delta-G solvation = -20584.085646 eV Core-core repulsion = 17463.711943 eV Total energy + Delta-G solvation = -3120.373703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10884 -38.29888 -36.58892 -35.48937 -33.42305 -31.51838 -30.65724 -29.51577 -28.27033 -26.26206 -25.39248 -24.11039 -22.65912 -22.36985 -20.32646 -19.77509 -18.00114 -17.14730 -16.90454 -16.28977 -15.67862 -15.10738 -14.90868 -14.71289 -14.66938 -14.48557 -14.42153 -13.73487 -13.26838 -13.09804 -12.72246 -12.37478 -12.30173 -12.23330 -12.09519 -11.72678 -11.55257 -11.15479 -11.09521 -10.84968 -10.64823 -10.60031 -9.87865 -9.48531 -9.45565 -9.26397 -9.14937 -8.38052 -8.18042 -6.96756 -6.03206 -4.06018 1.36162 1.69157 3.24199 3.31612 3.36174 3.37017 3.39098 3.80190 3.92707 4.33704 4.43850 4.65628 4.66762 4.83669 5.02582 5.07346 5.16492 5.32727 5.33839 5.35905 5.45014 5.53861 5.57507 5.64340 5.75468 5.96121 5.99646 6.13245 6.21733 6.46332 6.47315 6.60012 6.63916 6.73788 6.95949 6.98570 7.41588 7.60949 7.62249 7.74615 7.95558 8.00907 8.37579 9.00358 9.58247 11.08130 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.046904 B = 0.002681 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.822113 B =10443.229431 C =10909.758627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.493 5.493 3 C 0.017 3.983 4 C 0.023 3.977 5 O -0.314 6.314 6 C 0.017 3.983 7 C -0.081 4.081 8 C -0.174 4.174 9 C 0.212 3.788 10 N -0.744 5.744 11 C 0.122 3.878 12 C -0.120 4.120 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.172 4.172 23 C 0.073 3.927 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.397 0.603 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.940 22.978 9.608 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.210 5.210 3 C -0.111 4.111 4 C -0.054 4.054 5 O -0.229 6.229 6 C -0.031 4.031 7 C -0.100 4.100 8 C -0.197 4.197 9 C 0.107 3.893 10 N -0.372 5.372 11 C -0.002 4.002 12 C -0.158 4.158 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.196 4.196 23 C -0.024 4.024 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.232 0.768 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.549 22.694 9.599 25.258 hybrid contribution -0.586 -0.813 0.006 1.002 sum -6.135 21.882 9.605 24.672 Atomic orbital electron populations 1.22553 0.85260 1.03444 1.00748 1.59146 1.08438 1.12471 1.40914 1.22943 1.02786 0.88524 0.96852 1.23428 0.95697 0.95951 0.90358 1.86293 1.65346 1.14785 1.56473 1.18690 1.07342 0.82588 0.94456 1.20177 1.00673 0.92234 0.96942 1.20555 1.06487 0.93729 0.98936 1.17652 0.93953 0.84316 0.93377 1.44988 1.68290 1.01679 1.22262 1.21598 0.98134 0.91505 0.88947 1.21842 1.00974 0.91457 1.01525 1.19021 0.96403 0.93506 0.92358 1.21178 1.40369 0.91250 1.03324 0.92733 1.25024 0.95192 0.99179 0.95034 1.69952 1.41339 1.33491 1.08611 0.86640 0.78483 0.84841 0.77935 1.20236 1.21252 1.20229 1.20085 1.08969 0.90986 0.99605 1.18302 1.02760 0.92712 0.88617 0.90420 0.90773 0.94921 0.88707 0.88907 0.92139 0.87385 0.85408 0.85059 0.76848 0.92561 0.92606 0.92792 0.92823 0.96359 0.96342 0.92871 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.19 60.06 0.55 0.77 16 2 N -0.49 -5.26 4.86 -178.68 -0.87 -6.13 16 3 C 0.02 0.14 6.02 -3.69 -0.02 0.12 16 4 C 0.02 0.20 7.06 37.38 0.26 0.46 16 5 O -0.31 -3.97 10.41 -20.63 -0.21 -4.18 16 6 C 0.02 0.23 6.47 -39.11 -0.25 -0.02 16 7 C -0.08 -1.09 9.93 -39.43 -0.39 -1.48 16 8 C -0.17 -2.46 9.31 -39.39 -0.37 -2.83 16 9 C 0.21 3.04 6.65 -83.78 -0.56 2.49 16 10 N -0.74 -10.81 5.74 -58.65 -0.34 -11.15 16 11 C 0.12 2.02 4.91 -4.04 -0.02 2.00 16 12 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 13 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.17 -2.29 9.31 -39.11 -0.36 -2.65 16 23 C 0.07 0.95 5.12 -83.61 -0.43 0.52 16 24 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 25 H 0.07 0.46 7.98 -51.93 -0.41 0.05 16 26 H 0.03 0.28 6.89 -51.92 -0.36 -0.08 16 27 H 0.09 0.54 7.90 -51.93 -0.41 0.13 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.50 6.80 -51.93 -0.35 0.14 16 30 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.13 1.80 6.73 -52.49 -0.35 1.45 16 33 H 0.40 5.25 8.49 -40.82 -0.35 4.91 16 34 H 0.06 0.95 7.94 -51.93 -0.41 0.53 16 35 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -31.09 333.51 -9.35 -40.44 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.39 Total: 1.49 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.28 Total: -16.02 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.47 Total: -43.23 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.21 Total: -4.18 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.09 -9.35 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168437165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.508 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds