Wall clock time and date at job start Mon Mar 30 2020 02:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47428 * 2 1 4 4 C 1.46503 * 119.99907 * 277.48492 * 3 2 1 5 5 C 1.53002 * 109.47044 * 270.00007 * 4 3 2 6 6 N 1.46502 * 109.47434 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00128 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99810 * 359.97438 * 7 6 5 9 9 C 1.38804 * 119.99981 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00235 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00117 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46913 * 89.99792 * 11 9 7 13 13 H 1.48498 * 109.47414 * 210.00074 * 11 9 7 14 14 H 1.48507 * 109.47020 * 330.00416 * 11 9 7 15 15 C 1.34773 * 120.00137 * 97.48082 * 3 2 1 16 16 O 1.21560 * 119.99713 * 185.76131 * 15 3 2 17 17 C 1.47837 * 120.00203 * 5.75630 * 15 3 2 18 18 C 1.39577 * 120.14545 * 134.22695 * 17 15 3 19 19 C 1.37961 * 119.85509 * 179.72565 * 18 17 15 20 20 C 1.38355 * 120.14292 * 0.27868 * 19 18 17 21 21 C 1.50700 * 119.85355 * 179.97438 * 20 19 18 22 22 C 1.38357 * 120.29303 * 0.02562 * 20 19 18 23 23 C 1.37955 * 120.14953 * 359.97402 * 22 20 19 24 24 H 1.08996 * 109.46920 * 69.34935 * 1 2 3 25 25 H 1.08993 * 109.47475 * 189.35350 * 1 2 3 26 26 H 1.09002 * 109.47068 * 309.35603 * 1 2 3 27 27 H 1.08996 * 109.47393 * 239.99691 * 2 1 3 28 28 H 1.08998 * 109.46800 * 119.99724 * 2 1 3 29 29 H 1.09001 * 109.47152 * 29.99217 * 4 3 2 30 30 H 1.08997 * 109.47088 * 149.99674 * 4 3 2 31 31 H 1.09006 * 109.46927 * 299.99797 * 5 4 3 32 32 H 1.09001 * 109.47064 * 59.99263 * 5 4 3 33 33 H 0.97005 * 119.99497 * 359.97438 * 6 5 4 34 34 H 0.97005 * 120.00444 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.07317 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.92363 * 180.29868 * 19 18 17 37 37 H 1.09004 * 109.46942 * 89.99982 * 21 20 19 38 38 H 1.09001 * 109.47744 * 209.99808 * 21 20 19 39 39 H 1.09001 * 109.47273 * 330.00823 * 21 20 19 40 40 H 1.08001 * 119.92588 * 180.02562 * 22 20 19 41 41 H 1.08000 * 120.07882 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1068 2.1269 -1.2580 5 6 3.4860 1.9096 -1.8838 6 7 3.5742 2.6548 -3.1420 7 6 4.7242 2.6116 -3.8842 8 1 5.5663 2.0285 -3.5417 9 6 4.8076 3.3172 -5.0766 10 7 5.9128 3.2753 -5.7902 11 14 3.3508 4.3251 -5.6693 12 1 3.4534 5.7061 -5.1330 13 1 3.3505 4.3693 -7.1536 14 1 2.0904 3.7013 -5.1923 15 6 2.3863 1.9658 1.1572 16 8 2.6916 3.1424 1.1735 17 6 2.4186 1.1764 2.4068 18 6 3.5128 1.2717 3.2680 19 6 3.5341 0.5366 4.4353 20 6 2.4765 -0.2981 4.7501 21 6 2.5068 -1.0985 6.0266 22 6 1.3917 -0.4019 3.8976 23 6 1.3578 0.3277 2.7273 24 1 -0.3633 0.3624 -0.9616 25 1 -0.3634 -1.0139 0.1670 26 1 -0.3633 0.6517 0.7946 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3369 1.7742 -1.9442 30 1 1.9600 3.1889 -1.0618 31 1 4.2560 2.2622 -1.1975 32 1 3.6328 0.8475 -2.0798 33 1 2.8180 3.1788 -3.4494 34 1 5.9712 3.7687 -6.6233 35 1 4.3388 1.9231 3.0236 36 1 4.3780 0.6131 5.1049 37 1 2.0518 -0.5188 6.8298 38 1 1.9506 -2.0256 5.8875 39 1 3.5399 -1.3300 6.2859 40 1 0.5692 -1.0549 4.1494 41 1 0.5103 0.2460 2.0629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699215071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:58 Heat of formation + Delta-G solvation = 10.980063 kcal Electronic energy + Delta-G solvation = -21027.707480 eV Core-core repulsion = 17908.283932 eV Total energy + Delta-G solvation = -3119.423548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58779 -38.69055 -36.35177 -34.87211 -33.12725 -31.86191 -31.18235 -30.51041 -28.65200 -27.09363 -23.86693 -23.59638 -22.89960 -22.05397 -21.28341 -19.43669 -17.66156 -17.41724 -16.62018 -15.93264 -15.46090 -15.23870 -14.64600 -14.36424 -14.14244 -14.07665 -13.73100 -13.60242 -13.50614 -13.21924 -12.86840 -12.62198 -12.53255 -12.25466 -12.20936 -11.67333 -11.54976 -11.35995 -11.13652 -11.09315 -11.01877 -10.71941 -10.15491 -9.81805 -9.57961 -9.17963 -8.87797 -8.87513 -8.59392 -7.22630 -5.74453 -3.10694 0.78304 1.14394 2.70988 2.97764 3.39548 3.43534 3.47699 3.55871 4.33830 4.51870 4.60110 4.61626 4.70622 4.79384 4.97924 5.03336 5.12156 5.21862 5.24588 5.36853 5.41897 5.46901 5.48770 5.55033 5.59649 5.67268 5.72787 5.76659 5.78879 5.94443 6.00723 6.07438 6.19697 6.29059 6.46793 6.64537 6.68061 6.82041 7.42150 8.00566 8.20444 8.43844 9.22342 9.94520 10.13931 11.43898 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.003574 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.050754 B = 7833.448572 C = 8216.851964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.092 3.908 3 N -0.600 5.600 4 C 0.104 3.896 5 C 0.147 3.853 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.556 3.444 16 O -0.528 6.528 17 C -0.128 4.128 18 C -0.064 4.064 19 C -0.126 4.126 20 C -0.071 4.071 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.100 4.100 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.027 0.973 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 -11.641 22.501 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.031 4.031 3 N -0.333 5.333 4 C -0.019 4.019 5 C 0.019 3.981 6 N -0.399 5.399 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.344 3.656 16 O -0.404 6.404 17 C -0.131 4.131 18 C -0.082 4.082 19 C -0.144 4.144 20 C -0.071 4.071 21 C -0.174 4.174 22 C -0.147 4.147 23 C -0.118 4.118 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.269 -11.069 22.412 27.845 hybrid contribution -0.931 0.702 -0.644 1.332 sum -13.200 -10.367 21.768 27.487 Atomic orbital electron populations 1.22357 0.95979 1.02330 1.02816 1.21860 0.94274 0.82771 1.04231 1.47799 1.64333 1.14232 1.06941 1.21735 0.98979 0.97682 0.83496 1.20886 0.93796 0.95477 0.87975 1.42557 1.15888 1.58717 1.22783 1.19030 0.91827 1.25455 1.00956 0.89245 1.24669 0.96972 1.00220 0.97298 1.69703 1.26088 1.46463 1.15987 0.86520 0.82992 0.80884 0.77968 1.20957 1.21695 1.20335 1.18422 0.77012 0.86860 0.83291 1.90818 1.48026 1.15605 1.85978 1.19928 0.97107 0.99755 0.96274 1.21219 0.97156 0.97085 0.92769 1.21006 0.98869 0.97414 0.97127 1.20115 0.94078 0.96522 0.96376 1.20844 1.02938 0.99167 0.94422 1.20969 0.98395 1.00928 0.94424 1.21854 0.98418 0.94340 0.97219 0.91676 0.91126 0.91994 0.89824 0.89295 0.90426 0.89582 0.95185 0.95524 0.80648 0.93035 0.85053 0.85434 0.90940 0.91353 0.91316 0.85590 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.14 37.16 0.34 -1.10 16 2 C 0.09 0.95 5.60 -4.04 -0.02 0.93 16 3 N -0.60 -8.58 2.48 -174.80 -0.43 -9.02 16 4 C 0.10 1.73 5.58 -4.04 -0.02 1.71 16 5 C 0.15 3.05 6.58 -4.04 -0.03 3.03 16 6 N -0.75 -18.81 5.41 -59.91 -0.32 -19.13 16 7 C -0.24 -7.16 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 10 N -0.93 -30.03 13.97 55.49 0.78 -29.26 16 11 Si 0.89 22.62 27.73 -169.99 -4.71 17.91 16 12 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 15 C 0.56 8.83 7.27 -12.33 -0.09 8.74 16 16 O -0.53 -10.55 16.55 5.31 0.09 -10.47 16 17 C -0.13 -1.62 5.08 -104.97 -0.53 -2.16 16 18 C -0.06 -0.76 9.70 -39.18 -0.38 -1.14 16 19 C -0.13 -1.19 9.68 -39.64 -0.38 -1.58 16 20 C -0.07 -0.59 5.89 -104.54 -0.62 -1.21 16 21 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 22 C -0.13 -1.07 9.68 -39.64 -0.38 -1.46 16 23 C -0.10 -0.99 7.42 -39.18 -0.29 -1.28 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 6.33 -51.93 -0.33 0.18 16 27 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 28 H 0.09 0.84 5.09 -51.93 -0.26 0.57 16 29 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 30 H 0.09 1.57 7.35 -51.93 -0.38 1.19 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.36 8.67 5.53 -40.82 -0.23 8.44 16 34 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 39 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.14 1.18 3.68 -52.49 -0.19 0.99 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -35.36 336.06 -7.89 -43.26 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.05 Total: 4.73 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.09 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.02 Total: -57.40 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.36 -7.89 -43.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699215071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.237 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds