Wall clock time and date at job start Mon Mar 30 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47428 * 2 1 4 4 C 1.46503 * 119.99907 * 277.48492 * 3 2 1 5 5 C 1.53002 * 109.47044 * 270.00007 * 4 3 2 6 6 N 1.46502 * 109.47434 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00128 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99810 * 359.97438 * 7 6 5 9 9 C 1.38804 * 119.99981 * 179.97438 * 7 6 5 10 10 N 1.31616 * 120.00235 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 120.00117 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46913 * 89.99792 * 11 9 7 13 13 H 1.48498 * 109.47414 * 210.00074 * 11 9 7 14 14 H 1.48507 * 109.47020 * 330.00416 * 11 9 7 15 15 C 1.34773 * 120.00137 * 97.48082 * 3 2 1 16 16 O 1.21560 * 119.99713 * 185.76131 * 15 3 2 17 17 C 1.47837 * 120.00203 * 5.75630 * 15 3 2 18 18 C 1.39577 * 120.14545 * 134.22695 * 17 15 3 19 19 C 1.37961 * 119.85509 * 179.72565 * 18 17 15 20 20 C 1.38355 * 120.14292 * 0.27868 * 19 18 17 21 21 C 1.50700 * 119.85355 * 179.97438 * 20 19 18 22 22 C 1.38357 * 120.29303 * 0.02562 * 20 19 18 23 23 C 1.37955 * 120.14953 * 359.97402 * 22 20 19 24 24 H 1.08996 * 109.46920 * 69.34935 * 1 2 3 25 25 H 1.08993 * 109.47475 * 189.35350 * 1 2 3 26 26 H 1.09002 * 109.47068 * 309.35603 * 1 2 3 27 27 H 1.08996 * 109.47393 * 239.99691 * 2 1 3 28 28 H 1.08998 * 109.46800 * 119.99724 * 2 1 3 29 29 H 1.09001 * 109.47152 * 29.99217 * 4 3 2 30 30 H 1.08997 * 109.47088 * 149.99674 * 4 3 2 31 31 H 1.09006 * 109.46927 * 299.99797 * 5 4 3 32 32 H 1.09001 * 109.47064 * 59.99263 * 5 4 3 33 33 H 0.97005 * 119.99497 * 359.97438 * 6 5 4 34 34 H 0.97005 * 120.00444 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.07317 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.92363 * 180.29868 * 19 18 17 37 37 H 1.09004 * 109.46942 * 89.99982 * 21 20 19 38 38 H 1.09001 * 109.47744 * 209.99808 * 21 20 19 39 39 H 1.09001 * 109.47273 * 330.00823 * 21 20 19 40 40 H 1.08001 * 119.92588 * 180.02562 * 22 20 19 41 41 H 1.08000 * 120.07882 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1068 2.1269 -1.2580 5 6 3.4860 1.9096 -1.8838 6 7 3.5742 2.6548 -3.1420 7 6 4.7242 2.6116 -3.8842 8 1 5.5663 2.0285 -3.5417 9 6 4.8076 3.3172 -5.0766 10 7 5.9128 3.2753 -5.7902 11 14 3.3508 4.3251 -5.6693 12 1 3.4534 5.7061 -5.1330 13 1 3.3505 4.3693 -7.1536 14 1 2.0904 3.7013 -5.1923 15 6 2.3863 1.9658 1.1572 16 8 2.6916 3.1424 1.1735 17 6 2.4186 1.1764 2.4068 18 6 3.5128 1.2717 3.2680 19 6 3.5341 0.5366 4.4353 20 6 2.4765 -0.2981 4.7501 21 6 2.5068 -1.0985 6.0266 22 6 1.3917 -0.4019 3.8976 23 6 1.3578 0.3277 2.7273 24 1 -0.3633 0.3624 -0.9616 25 1 -0.3634 -1.0139 0.1670 26 1 -0.3633 0.6517 0.7946 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3369 1.7742 -1.9442 30 1 1.9600 3.1889 -1.0618 31 1 4.2560 2.2622 -1.1975 32 1 3.6328 0.8475 -2.0798 33 1 2.8180 3.1788 -3.4494 34 1 5.9712 3.7687 -6.6233 35 1 4.3388 1.9231 3.0236 36 1 4.3780 0.6131 5.1049 37 1 2.0518 -0.5188 6.8298 38 1 1.9506 -2.0256 5.8875 39 1 3.5399 -1.3300 6.2859 40 1 0.5692 -1.0549 4.1494 41 1 0.5103 0.2460 2.0629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699215071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:57 Heat of formation + Delta-G solvation = -12.115484 kcal Electronic energy + Delta-G solvation = -21028.708979 eV Core-core repulsion = 17908.283932 eV Total energy + Delta-G solvation = -3120.425046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62695 -39.60471 -37.71492 -36.60853 -34.20611 -33.47643 -32.28875 -31.49486 -29.98644 -28.08547 -25.56296 -24.45961 -23.66897 -23.53939 -22.58275 -20.60138 -19.64027 -18.52071 -17.74788 -16.99825 -16.54282 -16.43846 -16.00494 -15.81552 -15.43944 -15.16143 -14.93574 -14.77813 -14.58648 -14.44768 -13.96762 -13.79728 -13.48497 -13.07745 -12.99960 -12.96177 -12.89319 -12.80769 -12.48100 -12.30408 -12.12635 -12.07894 -11.85903 -11.76667 -11.06607 -11.01689 -9.95600 -9.83883 -9.60328 -9.41072 -8.08188 -5.44652 -0.04114 0.39840 1.35194 1.41031 1.47364 1.55974 1.88626 2.44923 2.75023 3.22584 3.38083 3.66433 3.85771 3.95245 3.97858 4.04771 4.07894 4.10027 4.34049 4.39825 4.45065 4.47371 4.53094 4.76229 4.79002 4.83977 4.89447 4.90471 4.98915 5.00313 5.08858 5.25155 5.31164 5.34528 5.42299 5.47032 5.61498 5.67435 5.96674 6.14423 6.28643 6.98403 7.02128 7.72261 7.94499 9.13130 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.003574 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.050754 B = 7833.448572 C = 8216.851964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.085 3.915 3 N -0.597 5.597 4 C 0.116 3.884 5 C 0.151 3.849 6 N -0.754 5.754 7 C -0.244 4.244 8 H 0.051 0.949 9 C -0.062 4.062 10 N -0.982 5.982 11 Si 0.960 3.040 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.244 1.244 15 C 0.550 3.450 16 O -0.584 6.584 17 C -0.153 4.153 18 C -0.087 4.087 19 C -0.130 4.130 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.095 4.095 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.000 1.000 32 H 0.034 0.966 33 H 0.369 0.631 34 H 0.261 0.739 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.027 -13.530 24.102 31.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.036 4.036 3 N -0.328 5.328 4 C -0.007 4.007 5 C 0.023 3.977 6 N -0.400 5.400 7 C -0.375 4.375 8 H 0.069 0.931 9 C -0.253 4.253 10 N -0.632 5.632 11 Si 0.786 3.214 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.168 1.168 15 C 0.340 3.660 16 O -0.465 6.465 17 C -0.156 4.156 18 C -0.106 4.106 19 C -0.148 4.148 20 C -0.066 4.066 21 C -0.173 4.173 22 C -0.142 4.142 23 C -0.113 4.113 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.019 0.981 32 H 0.052 0.948 33 H 0.203 0.797 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.163 0.837 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.179 0.821 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.669 -13.020 24.050 31.518 hybrid contribution 0.220 1.175 -1.021 1.572 sum -15.449 -11.845 23.028 30.154 Atomic orbital electron populations 1.22321 0.93624 1.04228 1.02666 1.22178 0.96137 0.80341 1.04976 1.47905 1.63746 1.15578 1.05579 1.21443 0.96864 0.97461 0.84944 1.20932 0.95783 0.94965 0.86007 1.42486 1.14708 1.59282 1.23541 1.18969 0.92333 1.24667 1.01508 0.93062 1.25584 1.00452 1.01830 0.97456 1.69890 1.28812 1.47853 1.16624 0.85339 0.80078 0.78773 0.77189 1.20718 1.21515 1.16839 1.19053 0.75771 0.86495 0.84647 1.90771 1.50612 1.18114 1.86985 1.19785 0.98961 1.01500 0.95364 1.21228 0.96971 0.98141 0.94219 1.21230 1.00153 0.97128 0.96305 1.20543 0.93213 0.95494 0.97307 1.20923 1.03928 0.99478 0.92934 1.21382 0.99142 1.00391 0.93280 1.22024 0.97664 0.93462 0.98165 0.92055 0.88093 0.91974 0.89593 0.88106 0.87548 0.91309 0.98141 0.94805 0.79727 0.93042 0.87114 0.83719 0.89871 0.89644 0.90632 0.82129 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.14 71.98 0.66 -1.55 16 2 C 0.08 1.59 5.60 86.38 0.48 2.07 16 3 N -0.60 -16.92 2.48 -825.23 -2.04 -18.96 16 4 C 0.12 3.86 5.58 86.38 0.48 4.34 16 5 C 0.15 6.40 6.58 86.38 0.57 6.97 16 6 N -0.75 -37.80 5.41 -343.44 -1.86 -39.66 16 7 C -0.24 -14.78 10.47 84.03 0.88 -13.90 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 10 N -0.98 -64.78 13.97 21.65 0.30 -64.47 16 11 Si 0.96 46.56 27.73 68.60 1.90 48.46 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 14 H -0.24 -10.44 6.52 99.48 0.65 -9.79 16 15 C 0.55 18.08 7.27 86.78 0.63 18.71 16 16 O -0.58 -24.87 16.55 -3.91 -0.06 -24.94 16 17 C -0.15 -3.92 5.08 -20.09 -0.10 -4.02 16 18 C -0.09 -2.15 9.70 22.53 0.22 -1.93 16 19 C -0.13 -2.33 9.68 22.23 0.22 -2.12 16 20 C -0.07 -0.90 5.89 -19.81 -0.12 -1.02 16 21 C -0.12 -0.84 10.01 71.24 0.71 -0.12 16 22 C -0.12 -1.61 9.68 22.23 0.22 -1.40 16 23 C -0.10 -1.66 7.42 22.53 0.17 -1.50 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.83 6.33 -2.39 -0.02 0.81 16 27 H 0.09 1.59 8.12 -2.39 -0.02 1.57 16 28 H 0.10 1.67 5.09 -2.39 -0.01 1.66 16 29 H 0.11 2.92 8.07 -2.39 -0.02 2.90 16 30 H 0.07 2.55 7.35 -2.39 -0.02 2.53 16 31 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.37 17.22 5.53 -92.70 -0.51 16.71 16 34 H 0.26 16.22 8.31 -92.70 -0.77 15.45 16 35 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 39 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 40 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.16 2.14 3.68 -2.91 -0.01 2.13 16 Total: -1.00 -80.93 336.06 4.17 -76.75 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.46 Total: 21.58 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 5.48 Total: 1.24 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -3.60 Total: -123.09 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.94 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.90 Total: 48.46 kcal Total: -80.93 4.17 -76.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699215071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.637 kcal (2) G-P(sol) polarization free energy of solvation -80.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds