Wall clock time and date at job start Mon Mar 30 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99661 * 2 1 4 4 C 1.53001 * 109.47437 * 270.00134 * 3 2 1 5 5 N 1.46496 * 109.47043 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99964 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99910 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00199 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99949 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47199 * 89.99849 * 10 8 6 12 12 H 1.48492 * 109.47486 * 209.99881 * 10 8 6 13 13 H 1.48503 * 109.47129 * 330.00596 * 10 8 6 14 14 C 1.34772 * 119.99918 * 180.02562 * 2 1 3 15 15 O 1.21276 * 120.00051 * 179.97438 * 14 2 1 16 16 C 1.50697 * 120.00262 * 359.97438 * 14 2 1 17 17 C 1.52995 * 109.47299 * 180.02562 * 16 14 2 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 14 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 1.08996 * 109.46969 * 269.99717 * 1 2 3 25 25 H 1.09004 * 109.47551 * 29.99613 * 1 2 3 26 26 H 1.08998 * 109.47407 * 149.99721 * 1 2 3 27 27 H 1.08999 * 109.47241 * 30.00319 * 3 2 1 28 28 H 1.09005 * 109.46696 * 150.00177 * 3 2 1 29 29 H 1.08999 * 109.47056 * 300.00298 * 4 3 2 30 30 H 1.09001 * 109.46706 * 60.00486 * 4 3 2 31 31 H 0.97003 * 120.00635 * 359.97438 * 5 4 3 32 32 H 0.97001 * 120.00321 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.47274 * 60.00356 * 16 14 2 34 34 H 1.09004 * 109.47166 * 300.00503 * 16 14 2 35 35 H 1.09005 * 109.47610 * 60.00298 * 17 16 14 36 36 H 1.09000 * 109.47256 * 299.99639 * 17 16 14 37 37 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 41 41 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1853 2.9789 -1.4424 6 6 3.5273 3.5722 -2.6283 7 1 3.2570 3.1048 -3.5636 8 6 4.2214 4.7744 -2.6283 9 7 4.5503 5.3443 -1.4884 10 14 4.6884 5.5833 -4.2459 11 1 3.5997 6.4977 -4.6747 12 1 5.9433 6.3570 -4.0683 13 1 4.8934 4.5383 -5.2809 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 6 2.3796 -3.6351 -0.0005 18 6 1.6261 -4.9403 0.0001 19 6 1.2802 -5.5392 -1.1968 20 6 0.5895 -6.7367 -1.1962 21 6 0.2453 -7.3355 0.0012 22 6 0.5866 -6.7339 1.1981 23 6 1.2813 -5.5388 1.1975 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6083 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.0415 0.9509 -1.9564 30 1 1.4999 1.8409 -1.9562 31 1 3.4278 3.3990 -0.6023 32 1 5.0350 6.1846 -1.4883 33 1 0.7585 -2.5299 -0.8903 34 1 0.7590 -2.5302 0.8897 35 1 3.0063 -3.5775 0.8895 36 1 3.0062 -3.5775 -0.8905 37 1 1.5495 -5.0716 -2.1324 38 1 0.3188 -7.2044 -2.1313 39 1 -0.2940 -8.2713 0.0016 40 1 0.3138 -7.1995 2.1336 41 1 1.5522 -5.0713 2.1326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753255133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:43 Heat of formation + Delta-G solvation = -6.154009 kcal Electronic energy + Delta-G solvation = -20253.348914 eV Core-core repulsion = 17133.182377 eV Total energy + Delta-G solvation = -3120.166537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00323 -39.26557 -35.96632 -34.38255 -34.10481 -31.46629 -31.13150 -29.99021 -28.13707 -26.47277 -24.91209 -23.29344 -22.81181 -21.57147 -20.96974 -18.97209 -17.36645 -17.08747 -16.64433 -16.11758 -15.70161 -15.25811 -15.17676 -14.54517 -13.86243 -13.84441 -13.60050 -13.50756 -13.19619 -13.06668 -12.96991 -12.71417 -12.64340 -12.34654 -11.92182 -11.51263 -11.23581 -11.21583 -11.00031 -10.96331 -10.86310 -10.65142 -10.09274 -9.77565 -9.61621 -9.17152 -8.92232 -8.85019 -8.47312 -6.90885 -5.73946 -3.03097 1.09790 1.15070 2.77583 3.11736 3.45819 3.50748 3.53050 3.55199 4.39729 4.60716 4.63569 4.73942 4.80328 4.90556 4.93578 4.99962 5.11476 5.28511 5.29016 5.36324 5.40146 5.54313 5.64614 5.66068 5.70459 5.74883 5.84535 5.88698 6.03315 6.06633 6.16003 6.22163 6.26300 6.43190 6.58489 6.76360 6.77053 6.94196 7.53740 7.72369 8.33199 8.44764 9.55415 10.11911 10.47012 11.49036 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035226 B = 0.002691 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.683173 B =10401.910506 C =10695.459342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.107 3.893 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.508 3.492 15 O -0.534 6.534 16 C -0.131 4.131 17 C -0.068 4.068 18 C -0.078 4.078 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.942 -23.745 5.925 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.347 5.347 3 C -0.016 4.016 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.296 3.704 15 O -0.410 6.410 16 C -0.171 4.171 17 C -0.106 4.106 18 C -0.078 4.078 19 C -0.134 4.134 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.269 -23.701 5.754 27.302 hybrid contribution 0.151 0.679 -0.638 0.944 sum -12.118 -23.023 5.116 26.515 Atomic orbital electron populations 1.21810 0.79739 1.03421 1.01614 1.47844 1.06909 1.06436 1.73533 1.21703 0.97478 0.83277 0.99108 1.20901 0.95017 0.89375 0.93238 1.42218 1.67081 1.21653 1.06588 1.19210 1.29363 1.02326 0.85970 0.91217 1.24756 1.01285 0.98078 0.96956 1.69661 1.45094 1.19538 1.23948 0.86153 0.77666 0.79227 0.82940 1.21714 1.21709 1.20752 1.20650 0.88149 0.85328 0.76310 1.90736 1.13908 1.87275 1.49102 1.21657 0.99184 0.91901 1.04313 1.20376 0.96378 0.89049 1.04776 1.19974 0.98156 0.96502 0.93213 1.21137 0.98724 0.95759 0.97827 1.21161 0.98673 0.95782 0.98089 1.21143 1.00688 1.00067 0.92696 1.21148 0.98745 0.95818 0.98062 1.21106 0.98845 0.95830 0.97726 0.92681 0.90577 0.91223 0.90559 0.89729 0.95974 0.96511 0.78266 0.93489 0.88875 0.89019 0.90083 0.89965 0.85915 0.86145 0.86312 0.86189 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.24 59.85 0.61 1.37 16 2 N -0.61 -8.72 2.87 -181.58 -0.52 -9.24 16 3 C 0.11 1.88 5.52 -4.04 -0.02 1.86 16 4 C 0.14 3.10 6.58 -4.04 -0.03 3.08 16 5 N -0.73 -19.47 5.60 -59.91 -0.34 -19.81 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.93 13.06 55.49 0.72 -28.20 16 10 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.51 7.51 7.67 -10.99 -0.08 7.42 16 15 O -0.53 -10.28 15.56 5.56 0.09 -10.20 16 16 C -0.13 -1.32 4.23 -27.89 -0.12 -1.44 16 17 C -0.07 -0.72 4.63 -27.88 -0.13 -0.85 16 18 C -0.08 -0.74 5.13 -104.62 -0.54 -1.28 16 19 C -0.12 -1.04 9.70 -39.58 -0.38 -1.43 16 20 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 21 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 22 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 23 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 27 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.59 7.67 -40.82 -0.31 10.28 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.09 0.81 7.40 -51.93 -0.38 0.43 16 34 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.08 0.90 8.04 -51.93 -0.42 0.49 16 36 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -34.70 347.15 -8.79 -43.49 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.44 Total: 5.12 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.51 Total: -4.34 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.13 Total: -57.25 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.70 -8.79 -43.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753255133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.336 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds