Wall clock time and date at job start Mon Mar 30 2020 02:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00111 * 2 1 4 4 N 1.34767 * 120.00202 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00278 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47151 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47299 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46894 * 54.99552 * 7 6 5 9 9 C 1.52995 * 109.47258 * 174.99883 * 7 6 5 10 10 C 1.50699 * 109.47044 * 184.99856 * 9 7 6 11 11 C 1.38238 * 120.00143 * 269.72934 * 10 9 7 12 12 C 1.38233 * 120.00102 * 179.76968 * 11 10 9 13 13 C 1.38241 * 120.00003 * 0.50106 * 12 11 10 14 14 C 1.38231 * 119.99540 * 359.74990 * 13 12 11 15 15 C 1.38231 * 120.00719 * 359.97438 * 14 13 12 16 16 N 1.46505 * 109.46930 * 295.00000 * 7 6 5 17 17 C 1.36931 * 119.99788 * 299.99848 * 16 7 6 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 7 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 7 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 H 1.08994 * 109.47401 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46880 * 300.00677 * 1 2 3 27 27 H 1.09001 * 109.47432 * 59.99935 * 1 2 3 28 28 H 0.97006 * 119.99676 * 0.02562 * 4 2 1 29 29 H 1.09003 * 109.46915 * 60.00915 * 5 4 2 30 30 H 1.09000 * 109.47232 * 300.00356 * 5 4 2 31 31 H 1.08995 * 109.46943 * 60.00127 * 6 5 4 32 32 H 1.09000 * 109.46992 * 300.00073 * 6 5 4 33 33 H 1.08998 * 109.47112 * 304.99682 * 9 7 6 34 34 H 1.09000 * 109.47135 * 65.00248 * 9 7 6 35 35 H 1.07998 * 119.99670 * 359.97438 * 11 10 9 36 36 H 1.08002 * 120.00271 * 180.22908 * 12 11 10 37 37 H 1.07999 * 120.00193 * 179.73050 * 13 12 11 38 38 H 1.08009 * 119.99794 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.00728 * 179.97438 * 15 14 13 40 40 H 0.97000 * 119.99792 * 119.99643 * 16 7 6 41 41 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6458 -1.1671 0.0000 6 6 4.1559 -2.6097 0.0001 7 6 5.6859 -2.6097 0.0001 8 1 6.0492 -2.0202 0.8419 9 6 6.1958 -4.0467 0.1260 10 6 7.6977 -4.0377 0.2495 11 6 8.4850 -4.1086 -0.8846 12 6 9.8626 -4.0956 -0.7715 13 6 10.4531 -4.0220 0.4762 14 6 9.6658 -3.9563 1.6106 15 6 8.2882 -3.9636 1.4973 16 7 6.1742 -2.0261 -1.2518 17 6 5.8434 -2.6007 -2.4499 18 1 5.2222 -3.4838 -2.4720 19 6 6.3014 -2.0443 -3.6363 20 7 7.0581 -0.9677 -3.6093 21 14 5.8438 -2.8236 -5.2712 22 1 4.5790 -2.2248 -5.7682 23 1 6.9277 -2.5796 -6.2565 24 1 5.6609 -4.2860 -5.0885 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6958 -2.0072 0.0005 29 1 4.0095 -0.6528 0.8896 30 1 4.0089 -0.6538 -0.8905 31 1 3.7922 -3.1236 -0.8896 32 1 3.7928 -3.1233 0.8903 33 1 5.7612 -4.5102 1.0116 34 1 5.9075 -4.6134 -0.7593 35 1 8.0236 -4.1709 -1.8591 36 1 10.4777 -4.1472 -1.6578 37 1 11.5295 -4.0162 0.5648 38 1 10.1272 -3.8993 2.5855 39 1 7.6731 -3.9127 2.3835 40 1 6.7319 -1.2327 -1.2319 41 1 7.3784 -0.5792 -4.4384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755723536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:37 Heat of formation + Delta-G solvation = -37.026461 kcal Electronic energy + Delta-G solvation = -21253.894348 eV Core-core repulsion = 18132.389080 eV Total energy + Delta-G solvation = -3121.505267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56841 -40.08356 -38.03410 -35.75729 -34.24729 -32.57338 -31.60943 -31.40855 -29.97659 -28.07043 -26.00990 -24.27297 -23.24720 -22.03809 -21.68233 -20.90038 -18.99741 -17.70566 -17.41978 -17.07195 -16.90849 -16.44358 -15.97977 -15.84265 -15.51777 -15.08841 -14.71762 -14.56590 -14.23425 -14.09914 -13.77671 -13.32267 -13.13354 -13.01107 -12.97854 -12.85168 -12.70596 -12.46970 -12.33315 -12.12898 -11.72949 -11.66769 -11.55300 -11.26143 -11.00691 -10.77748 -10.03029 -9.62984 -9.39358 -8.84348 -7.83101 -5.07864 0.65319 0.72046 1.45525 1.46271 1.53218 1.69481 2.40772 2.60845 3.08365 3.51951 3.93898 3.99555 4.03465 4.18680 4.22805 4.31437 4.40691 4.44855 4.52746 4.63169 4.67692 4.69081 4.79714 4.84296 4.89513 4.99620 5.07779 5.11840 5.19511 5.33080 5.38046 5.45641 5.53324 5.56285 5.64627 5.73715 5.82239 6.05015 6.34795 6.37424 6.67401 7.35558 7.44284 8.21184 8.43600 9.40807 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.005804 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.952487 B = 4823.457493 C = 6455.820200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.492 3.508 3 O -0.613 6.613 4 N -0.714 5.714 5 C 0.133 3.867 6 C -0.123 4.123 7 C 0.180 3.820 8 H 0.061 0.939 9 C -0.084 4.084 10 C -0.071 4.071 11 C -0.108 4.108 12 C -0.143 4.143 13 C -0.138 4.138 14 C -0.130 4.130 15 C -0.130 4.130 16 N -0.722 5.722 17 C -0.197 4.197 18 H 0.079 0.921 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.947 3.053 22 H -0.297 1.297 23 H -0.306 1.306 24 H -0.267 1.267 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.416 0.584 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.367 0.633 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.827 -8.758 12.947 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.281 3.719 3 O -0.496 6.496 4 N -0.366 5.366 5 C 0.009 3.991 6 C -0.163 4.163 7 C 0.070 3.930 8 H 0.080 0.920 9 C -0.124 4.124 10 C -0.071 4.071 11 C -0.127 4.127 12 C -0.161 4.161 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.147 4.147 16 N -0.360 5.360 17 C -0.329 4.329 18 H 0.097 0.903 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.779 3.221 22 H -0.226 1.226 23 H -0.234 1.234 24 H -0.192 1.192 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.254 0.746 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.198 0.802 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.484 -8.182 12.827 16.538 hybrid contribution 0.255 0.078 -1.803 1.822 sum -6.229 -8.104 11.024 15.034 Atomic orbital electron populations 1.21849 0.87537 1.06520 1.05811 1.21833 0.92696 0.82910 0.74414 1.90706 1.72500 1.33679 1.52677 1.46122 1.07357 1.09219 1.73946 1.21044 0.79579 0.98551 0.99922 1.22101 0.97403 0.94037 1.02722 1.20371 0.91707 0.92757 0.88176 0.92027 1.21054 0.90805 0.98373 1.02133 1.19939 0.96255 0.98036 0.92889 1.21133 0.94009 0.98929 0.98585 1.21297 0.94985 1.01513 0.98300 1.21311 1.00607 1.01351 0.92295 1.21381 0.93829 1.00422 0.99105 1.21303 0.95417 1.01072 0.96955 1.42502 1.60075 1.32294 1.01103 1.19301 1.22539 1.06541 0.84530 0.90330 1.25286 1.02218 0.99069 1.00211 1.69811 1.41818 1.24731 1.25732 0.85503 0.76276 0.78564 0.81719 1.22562 1.23395 1.19164 0.87259 0.87617 0.88573 0.74625 0.93274 0.95011 0.91917 0.88687 0.88914 0.92489 0.88489 0.86905 0.84584 0.83719 0.84077 0.80245 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.39 71.24 0.74 -1.88 16 2 C 0.49 14.58 7.94 87.66 0.70 15.28 16 3 O -0.61 -25.78 17.10 -3.04 -0.05 -25.83 16 4 N -0.71 -19.04 5.56 -463.06 -2.57 -21.61 16 5 C 0.13 4.51 5.56 86.38 0.48 4.99 16 6 C -0.12 -3.56 4.73 30.60 0.14 -3.42 16 7 C 0.18 6.16 2.67 44.99 0.12 6.28 16 8 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 9 C -0.08 -2.61 4.75 29.85 0.14 -2.47 16 10 C -0.07 -2.38 4.95 -19.86 -0.10 -2.48 16 11 C -0.11 -4.20 9.32 22.27 0.21 -4.00 16 12 C -0.14 -4.99 10.05 22.27 0.22 -4.76 16 13 C -0.14 -3.98 10.05 22.27 0.22 -3.76 16 14 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 15 C -0.13 -3.62 9.70 22.27 0.22 -3.40 16 16 N -0.72 -33.24 4.14 -322.93 -1.34 -34.58 16 17 C -0.20 -9.95 7.90 84.04 0.66 -9.28 16 18 H 0.08 3.78 6.64 -2.91 -0.02 3.76 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 20 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 21 Si 0.95 45.94 29.55 68.60 2.03 47.97 16 22 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 23 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 H 0.11 1.02 7.91 -2.39 -0.02 1.00 16 26 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.42 7.53 8.31 -92.70 -0.77 6.76 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 1.43 7.75 -2.39 -0.02 1.41 16 31 H 0.06 1.97 7.11 -2.39 -0.02 1.96 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.17 8.09 -2.39 -0.02 2.15 16 34 H 0.06 1.96 7.05 -2.39 -0.02 1.95 16 35 H 0.10 4.38 7.39 -2.91 -0.02 4.36 16 36 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.37 19.55 8.03 -92.71 -0.74 18.81 16 41 H 0.24 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -73.63 343.83 2.31 -71.31 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.49 Total: 37.69 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.45 Total: -15.86 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -3.63 Total: -115.28 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -73.63 2.31 -71.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755723536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.288 kcal (2) G-P(sol) polarization free energy of solvation -73.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds