Wall clock time and date at job start Mon Mar 30 2020 02:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47264 * 2 1 4 4 H 1.08995 * 109.46851 * 54.99696 * 3 2 1 5 5 C 1.50692 * 109.47299 * 174.99879 * 3 2 1 6 6 H 1.08000 * 120.00054 * 120.00148 * 5 3 2 7 7 C 1.37881 * 119.99979 * 299.99693 * 5 3 2 8 8 N 1.31510 * 120.00112 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99809 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47187 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46808 * 120.00159 * 9 7 5 12 12 H 1.48499 * 109.46852 * 239.99917 * 9 7 5 13 13 N 1.46905 * 109.46733 * 295.00112 * 3 2 1 14 14 C 1.46958 * 110.99615 * 179.97438 * 13 3 2 15 15 C 1.53058 * 109.36322 * 183.18488 * 14 13 3 16 16 N 1.46955 * 109.36436 * 301.59974 * 15 14 13 17 17 C 1.38405 * 111.00073 * 183.18566 * 16 15 14 18 18 N 1.32494 * 119.21719 * 179.97438 * 17 16 15 19 19 C 1.32279 * 120.73958 * 179.97438 * 18 17 16 20 20 C 1.38606 * 119.19627 * 0.02562 * 19 18 17 21 21 C 1.38603 * 118.55867 * 0.25202 * 20 19 18 22 22 N 1.32276 * 119.19528 * 359.51013 * 21 20 19 23 23 C 1.46962 * 110.87990 * 59.31801 * 16 15 14 24 24 C 1.46964 * 110.99724 * 303.79260 * 13 3 2 25 25 H 1.08991 * 109.47624 * 300.00253 * 1 2 3 26 26 H 1.09003 * 109.47199 * 60.00681 * 1 2 3 27 27 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47478 * 240.00004 * 2 1 3 29 29 H 1.09004 * 109.47440 * 119.99813 * 2 1 3 30 30 H 0.96997 * 120.00066 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.48931 * 63.21777 * 14 13 3 32 32 H 1.08998 * 109.50812 * 303.16360 * 14 13 3 33 33 H 1.08997 * 109.48885 * 181.63005 * 15 14 13 34 34 H 1.09002 * 109.50113 * 61.57451 * 15 14 13 35 35 H 1.07994 * 120.40014 * 179.97438 * 19 18 17 36 36 H 1.08002 * 120.71685 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.39897 * 179.72154 * 21 20 19 38 38 H 1.08996 * 109.48762 * 60.64882 * 23 16 15 39 39 H 1.09000 * 109.48429 * 180.71616 * 23 16 15 40 40 H 1.08996 * 109.48778 * 296.78434 * 24 13 3 41 41 H 1.09005 * 109.48704 * 56.85317 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8814 1.3819 10 1 6.5986 1.5474 0.1948 11 1 6.3988 1.6169 2.6103 12 1 6.4970 -0.5173 1.4632 13 7 1.6513 2.0992 -1.2553 14 6 2.1249 3.4900 -1.2906 15 6 1.6329 4.1612 -2.5752 16 7 2.1271 3.4099 -3.7375 17 6 1.7609 4.0286 -4.9202 18 7 2.1242 3.4863 -6.0732 19 6 1.7902 4.0519 -7.2213 20 6 1.0523 5.2251 -7.2077 21 6 0.6940 5.7683 -5.9840 22 7 1.0563 5.1496 -4.8724 23 6 1.6535 2.0191 -3.7021 24 6 2.1451 1.3477 -2.4177 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0617 2.9496 31 1 3.2145 3.5038 -1.2674 32 1 1.7359 4.0290 -0.4267 33 1 2.0072 5.1840 -2.6173 34 1 0.5430 4.1719 -2.5857 35 1 2.0896 3.6054 -8.1580 36 1 0.7666 5.7079 -8.1306 37 1 0.1229 6.6839 -5.9386 38 1 0.5639 2.0053 -3.7253 39 1 2.0429 1.4804 -4.5660 40 1 3.2349 1.3368 -2.4074 41 1 1.7704 0.3249 -2.3753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036668736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:36 Heat of formation + Delta-G solvation = 78.425998 kcal Electronic energy + Delta-G solvation = -21984.694361 eV Core-core repulsion = 18900.488239 eV Total energy + Delta-G solvation = -3084.206122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16609 -38.72832 -36.01681 -33.76191 -32.87436 -31.52275 -30.68664 -30.15638 -27.29396 -25.27744 -24.80756 -23.11438 -22.82245 -22.22408 -19.90108 -18.90798 -17.79242 -17.37676 -16.31776 -15.78811 -15.20929 -15.16968 -14.53949 -14.26061 -14.10053 -13.84827 -13.64646 -13.51020 -13.12818 -12.58253 -12.24370 -11.75892 -11.47298 -11.19966 -11.03419 -10.94075 -10.87607 -10.73398 -10.65025 -10.57737 -10.40076 -10.04597 -9.81862 -9.68123 -9.40236 -9.13908 -9.08247 -8.35021 -8.23408 -7.14992 -5.97765 -4.10871 0.94474 1.09600 3.27509 3.30278 3.36423 3.41074 3.78037 4.15177 4.41694 4.53767 4.77206 5.00526 5.04932 5.08853 5.26530 5.42494 5.51722 5.59710 5.81303 5.84421 5.97463 6.06210 6.20741 6.25834 6.36036 6.44797 6.57720 6.66962 6.73836 6.77907 6.87727 6.90894 7.08131 7.19309 7.30316 7.37379 7.62570 7.76035 7.96083 8.14527 8.19366 8.30654 8.44592 8.99041 9.56937 11.01356 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.004632 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.922931 B = 6043.656904 C = 6512.582259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.214 3.786 4 H 0.041 0.959 5 C -0.542 4.542 6 H 0.058 0.942 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.536 5.536 14 C 0.060 3.940 15 C 0.075 3.925 16 N -0.457 5.457 17 C 0.501 3.499 18 N -0.534 5.534 19 C 0.173 3.827 20 C -0.276 4.276 21 C 0.173 3.827 22 N -0.553 5.553 23 C 0.073 3.927 24 C 0.058 3.942 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.025 0.975 28 H 0.034 0.966 29 H 0.094 0.906 30 H 0.260 0.740 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.166 0.834 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 7.172 -15.317 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.108 3.892 4 H 0.059 0.941 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.261 5.261 14 C -0.069 4.069 15 C -0.052 4.052 16 N -0.176 5.176 17 C 0.145 3.855 18 N -0.252 5.252 19 C 0.005 3.995 20 C -0.300 4.300 21 C 0.005 3.995 22 N -0.273 5.273 23 C -0.053 4.053 24 C -0.071 4.071 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.183 0.817 36 H 0.160 0.840 37 H 0.182 0.818 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.763 6.556 -14.157 16.632 hybrid contribution 1.117 0.531 -0.721 1.432 sum -4.646 7.087 -14.878 17.122 Atomic orbital electron populations 1.21714 0.98830 0.98438 1.00592 1.21675 0.92252 0.99246 1.02170 1.19283 0.93198 0.91060 0.85665 0.94137 1.21780 0.92805 1.37972 1.05518 0.92359 1.24893 0.97772 0.94999 0.95676 1.69878 1.34687 1.38399 1.09458 0.86636 0.86295 0.77694 0.77986 1.19886 1.21067 1.21038 1.62709 1.58146 1.01206 1.04008 1.22021 0.99407 0.90790 0.94651 1.22227 0.98860 0.96583 0.87489 1.58585 1.54653 1.04900 0.99435 1.21301 0.85971 0.88012 0.90176 1.68069 1.23741 1.35400 0.98031 1.23065 0.89751 0.90705 0.96014 1.22647 1.06415 1.00407 1.00515 1.23046 0.92136 0.96981 0.87349 1.68460 1.14273 1.11869 1.32689 1.22384 0.97999 0.84337 1.00536 1.22074 0.99284 0.97408 0.88285 0.94098 0.93560 0.95567 0.94700 0.88808 0.92979 0.93188 0.90575 0.90151 0.92684 0.81667 0.83970 0.81837 0.93688 0.89500 0.93145 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.80 37.15 0.36 -2.40 16 2 C -0.12 -2.66 4.94 -26.73 -0.13 -2.79 16 3 C 0.21 5.15 1.82 -68.86 -0.13 5.02 16 4 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 5 C -0.54 -14.26 7.12 -34.44 -0.25 -14.50 16 6 H 0.06 1.58 5.80 -52.49 -0.30 1.27 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.59 11.29 55.43 0.63 -23.97 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.54 -11.12 4.19 -227.87 -0.95 -12.07 16 14 C 0.06 1.18 5.25 -3.76 -0.02 1.16 16 15 C 0.08 1.30 4.77 -3.76 -0.02 1.28 16 16 N -0.46 -8.02 4.77 -175.23 -0.84 -8.86 16 17 C 0.50 8.13 7.17 -322.81 -2.31 5.82 16 18 N -0.53 -8.00 9.72 -13.93 -0.14 -8.13 16 19 C 0.17 1.86 11.30 -17.22 -0.19 1.67 16 20 C -0.28 -2.49 10.16 -39.31 -0.40 -2.89 16 21 C 0.17 1.85 11.30 -17.23 -0.19 1.65 16 22 N -0.55 -8.12 8.70 -13.93 -0.12 -8.24 16 23 C 0.07 1.25 5.46 -3.77 -0.02 1.23 16 24 C 0.06 1.13 4.93 -3.77 -0.02 1.11 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.88 7.75 -51.93 -0.40 0.48 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.78 6.00 -51.93 -0.31 0.47 16 29 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.05 1.09 6.58 -51.93 -0.34 0.75 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.33 7.80 -51.93 -0.41 0.92 16 34 H 0.05 0.95 8.03 -51.93 -0.42 0.54 16 35 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.42 7.64 -51.93 -0.40 1.02 16 40 H 0.05 1.10 6.81 -51.93 -0.35 0.74 16 41 H 0.08 1.60 5.95 -51.93 -0.31 1.29 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -29.48 320.35 -11.10 -40.58 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.07 Total: 1.60 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.41 Total: -1.88 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -1.42 Total: -61.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.48 -11.10 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036668736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.006 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds