Wall clock time and date at job start Mon Mar 30 2020 01:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48501 * 109.46893 * 85.01493 * 3 2 1 5 5 H 1.48498 * 109.47564 * 205.01474 * 3 2 1 6 6 H 1.48496 * 109.47268 * 325.01683 * 3 2 1 7 7 C 1.38811 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99874 * 189.03134 * 7 2 1 9 9 N 1.36933 * 120.00083 * 9.03716 * 7 2 1 10 10 C 1.47421 * 125.64835 * 10.76799 * 9 7 2 11 11 C 1.54921 * 104.83238 * 155.84120 * 10 9 7 12 12 C 1.55156 * 101.58051 * 37.01034 * 11 10 9 13 13 C 1.47029 * 125.64659 * 190.46673 * 9 7 2 14 14 H 1.08991 * 109.88140 * 300.50758 * 13 9 7 15 15 C 1.50697 * 109.88517 * 61.67569 * 13 9 7 16 16 N 1.30688 * 126.43362 * 43.56482 * 15 13 9 17 17 N 1.28755 * 109.70240 * 179.64694 * 16 15 13 18 18 C 1.30248 * 109.53431 * 359.83159 * 17 16 15 19 19 N 1.35132 * 126.43310 * 223.26344 * 15 13 9 20 20 C 1.46337 * 127.21658 * 1.99988 * 19 15 13 21 21 C 1.53121 * 109.26527 * 206.98488 * 20 19 15 22 22 C 1.52799 * 109.71941 * 270.55771 * 21 20 19 23 23 C 1.52565 * 110.50715 * 61.41864 * 22 21 20 24 24 C 1.50673 * 127.17887 * 180.88260 * 18 17 16 25 25 H 0.97006 * 120.00394 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.36837 * 274.67714 * 10 9 7 27 27 H 1.08994 * 110.36849 * 37.00283 * 10 9 7 28 28 H 1.08992 * 111.00042 * 155.08518 * 11 10 9 29 29 H 1.08995 * 111.00009 * 278.90005 * 11 10 9 30 30 H 1.08997 * 110.72273 * 82.86322 * 12 11 10 31 31 H 1.09002 * 110.71831 * 205.96252 * 12 11 10 32 32 H 1.09003 * 109.71531 * 86.94536 * 20 19 15 33 33 H 1.08991 * 109.38175 * 326.83196 * 20 19 15 34 34 H 1.09000 * 109.42520 * 150.48608 * 21 20 19 35 35 H 1.08997 * 109.43342 * 30.63475 * 21 20 19 36 36 H 1.08998 * 109.27065 * 301.15666 * 22 21 20 37 37 H 1.08997 * 109.27099 * 181.68544 * 22 21 20 38 38 H 1.08997 * 109.45936 * 273.39589 * 23 22 21 39 39 H 1.09008 * 109.45574 * 153.46080 * 23 22 21 40 40 H 1.09004 * 109.53677 * 346.67490 * 24 18 17 41 41 H 1.09000 * 109.54103 * 106.83533 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1071 1.3948 5 1 3.5964 1.4121 -0.5920 6 1 1.5043 2.6199 -0.8027 7 6 2.0102 -1.2022 -0.0005 8 1 3.0801 -1.2080 0.1463 9 7 1.3382 -2.3806 -0.1873 10 6 -0.0658 -2.5102 -0.6177 11 6 -0.1548 -3.9160 -1.2624 12 6 0.7885 -4.7393 -0.3460 13 6 1.8994 -3.7263 0.0021 14 1 2.7537 -3.8682 -0.6597 15 6 2.3232 -3.9076 1.4369 16 7 1.6502 -3.5447 2.4967 17 7 2.3078 -3.8605 3.5577 18 6 3.4245 -4.4404 3.2214 19 7 3.4679 -4.4810 1.8692 20 6 4.5573 -5.0110 1.0484 21 6 5.2837 -6.1136 1.8238 22 6 6.4145 -5.5031 2.6505 23 6 5.8578 -4.5114 3.6675 24 6 4.4821 -4.9851 4.1462 25 1 -0.4851 0.8401 -0.0004 26 1 -0.7336 -2.4438 0.2412 27 1 -0.3107 -1.7409 -1.3500 28 1 -1.1737 -4.3010 -1.2210 29 1 0.2129 -3.8993 -2.2883 30 1 0.2647 -5.0665 0.5521 31 1 1.1998 -5.5935 -0.8838 32 1 5.2591 -4.2123 0.8086 33 1 4.1477 -5.4240 0.1267 34 1 5.6978 -6.8377 1.1221 35 1 4.5792 -6.6147 2.4875 36 1 7.1072 -4.9863 1.9864 37 1 6.9453 -6.2971 3.1758 38 1 5.7624 -3.5300 3.2030 39 1 6.5354 -4.4454 4.5188 40 1 4.3033 -4.6221 5.1583 41 1 4.4474 -6.0745 4.1382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069623825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:05 Heat of formation + Delta-G solvation = 98.070595 kcal Electronic energy + Delta-G solvation = -22569.210159 eV Core-core repulsion = 19485.855891 eV Total energy + Delta-G solvation = -3083.354268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.60294 -37.74401 -37.31195 -33.88640 -32.53936 -31.41808 -30.09312 -29.19847 -27.41980 -25.92555 -24.63723 -24.36212 -21.87705 -20.22837 -20.10715 -20.05618 -19.31064 -16.91002 -16.49919 -16.08382 -15.17126 -15.08896 -14.91190 -14.54325 -14.11628 -13.80687 -13.29415 -12.93282 -12.86529 -12.13545 -12.09129 -11.98668 -11.84800 -11.63237 -11.25085 -11.08145 -10.93789 -10.87040 -10.75179 -10.71453 -10.55830 -10.11617 -9.99083 -9.90014 -9.70516 -9.49543 -9.43407 -8.58576 -8.24824 -6.85185 -5.73290 -3.07061 2.46471 3.00537 3.41244 3.45677 3.47729 3.67654 4.39549 4.47918 4.50361 4.56785 4.63585 4.99727 5.06330 5.08826 5.13379 5.34140 5.39417 5.47534 5.52290 5.54680 5.58430 5.64349 5.72494 5.75462 5.84151 5.87451 5.97831 6.06508 6.12921 6.28495 6.40459 6.54682 6.58448 6.66731 6.88354 6.94823 7.50876 7.52818 7.67649 7.82481 8.24900 9.18169 9.58232 9.79397 10.44795 11.38979 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.006538 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.318279 B = 4281.353003 C = 5015.321868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.004 3.996 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.288 1.288 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.567 5.567 10 C 0.172 3.828 11 C -0.146 4.146 12 C -0.116 4.116 13 C 0.238 3.762 14 H 0.048 0.952 15 C 0.189 3.811 16 N -0.273 5.273 17 N -0.302 5.302 18 C 0.145 3.855 19 N -0.474 5.474 20 C 0.108 3.892 21 C -0.138 4.138 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.028 4.028 25 H 0.254 0.746 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.345 -14.422 0.919 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.194 4.194 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.359 4.359 8 H 0.087 0.913 9 N -0.289 5.289 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.156 4.156 13 C 0.125 3.875 14 H 0.066 0.934 15 C -0.081 4.081 16 N -0.111 5.111 17 N -0.142 5.142 18 C -0.122 4.122 19 N -0.167 5.167 20 C -0.016 4.016 21 C -0.176 4.176 22 C -0.159 4.159 23 C -0.163 4.163 24 C -0.067 4.067 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.138 -13.557 1.760 17.019 hybrid contribution 1.594 0.508 -0.535 1.757 sum 11.732 -13.049 1.224 17.590 Atomic orbital electron populations 1.69962 1.04918 1.25278 1.55006 1.24817 0.95572 0.97761 1.01256 0.86165 0.78707 0.83658 0.77577 1.21553 1.20670 1.21421 1.18833 0.90519 0.82432 1.44108 0.91287 1.44606 1.09888 0.98483 1.75898 1.21491 0.85197 0.91293 0.97230 1.23009 0.98054 0.99015 0.98360 1.22514 0.96730 0.96412 0.99895 1.19571 0.95194 0.88985 0.83718 0.93424 1.26891 0.83781 0.96292 1.01107 1.74421 1.24460 1.18563 0.93694 1.74209 1.03313 1.14154 1.22557 1.24423 0.99368 1.05491 0.82874 1.46270 1.17257 1.46392 1.06763 1.21851 0.88293 0.97297 0.94152 1.21996 0.98367 0.97428 0.99778 1.21575 0.97463 0.98946 0.97912 1.21613 0.95684 0.99659 0.99334 1.20032 0.89606 1.00164 0.96921 0.93569 0.94769 0.90977 0.91870 0.92064 0.91258 0.92092 0.89884 0.88991 0.89886 0.90181 0.91443 0.91300 0.91502 0.90660 0.88924 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.25 10.69 55.49 0.59 -26.65 16 2 C 0.00 0.11 5.40 -17.43 -0.09 0.02 16 3 Si 0.91 22.78 29.56 -169.99 -5.03 17.76 16 4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.56 9.91 -15.06 -0.15 -6.71 16 8 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 9 N -0.57 -14.60 3.12 -163.87 -0.51 -15.11 16 10 C 0.17 4.24 5.41 -2.52 -0.01 4.23 16 11 C -0.15 -2.72 7.08 -24.58 -0.17 -2.89 16 12 C -0.12 -2.09 6.46 -24.90 -0.16 -2.26 16 13 C 0.24 5.01 3.44 -68.10 -0.23 4.78 16 14 H 0.05 0.93 7.33 -51.93 -0.38 0.55 16 15 C 0.19 4.11 6.45 -155.18 -1.00 3.11 16 16 N -0.27 -6.90 12.22 32.75 0.40 -6.50 16 17 N -0.30 -6.90 12.22 32.72 0.40 -6.50 16 18 C 0.15 2.61 6.92 -155.36 -1.08 1.53 16 19 N -0.47 -8.25 3.05 -110.89 -0.34 -8.59 16 20 C 0.11 1.31 6.06 -4.07 -0.02 1.29 16 21 C -0.14 -1.21 5.55 -26.77 -0.15 -1.36 16 22 C -0.12 -0.97 5.67 -27.06 -0.15 -1.12 16 23 C -0.12 -1.26 5.68 -26.87 -0.15 -1.42 16 24 C -0.03 -0.34 5.55 -27.81 -0.15 -0.49 16 25 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.95 8.06 -51.93 -0.42 0.53 16 27 H 0.07 1.92 6.97 -51.93 -0.36 1.56 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.32 7.85 -51.93 -0.41 0.92 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 33 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.78 5.69 -51.93 -0.30 0.48 16 36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -35.10 318.49 -9.54 -44.64 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -6.33 Total: -2.54 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -3.54 Total: -1.31 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: 0.54 Total: -63.36 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.10 -9.54 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069623825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.713 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds