Wall clock time and date at job start Mon Mar 30 2020 01:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48501 * 109.46893 * 85.01493 * 3 2 1 5 5 H 1.48498 * 109.47564 * 205.01474 * 3 2 1 6 6 H 1.48496 * 109.47268 * 325.01683 * 3 2 1 7 7 C 1.38811 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99874 * 189.03134 * 7 2 1 9 9 N 1.36933 * 120.00083 * 9.03716 * 7 2 1 10 10 C 1.47421 * 125.64835 * 10.76799 * 9 7 2 11 11 C 1.54921 * 104.83238 * 155.84120 * 10 9 7 12 12 C 1.55156 * 101.58051 * 37.01034 * 11 10 9 13 13 C 1.47029 * 125.64659 * 190.46673 * 9 7 2 14 14 H 1.08991 * 109.88140 * 300.50758 * 13 9 7 15 15 C 1.50697 * 109.88517 * 61.67569 * 13 9 7 16 16 N 1.30688 * 126.43362 * 43.56482 * 15 13 9 17 17 N 1.28755 * 109.70240 * 179.64694 * 16 15 13 18 18 C 1.30248 * 109.53431 * 359.83159 * 17 16 15 19 19 N 1.35132 * 126.43310 * 223.26344 * 15 13 9 20 20 C 1.46337 * 127.21658 * 1.99988 * 19 15 13 21 21 C 1.53121 * 109.26527 * 206.98488 * 20 19 15 22 22 C 1.52799 * 109.71941 * 270.55771 * 21 20 19 23 23 C 1.52565 * 110.50715 * 61.41864 * 22 21 20 24 24 C 1.50673 * 127.17887 * 180.88260 * 18 17 16 25 25 H 0.97006 * 120.00394 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.36837 * 274.67714 * 10 9 7 27 27 H 1.08994 * 110.36849 * 37.00283 * 10 9 7 28 28 H 1.08992 * 111.00042 * 155.08518 * 11 10 9 29 29 H 1.08995 * 111.00009 * 278.90005 * 11 10 9 30 30 H 1.08997 * 110.72273 * 82.86322 * 12 11 10 31 31 H 1.09002 * 110.71831 * 205.96252 * 12 11 10 32 32 H 1.09003 * 109.71531 * 86.94536 * 20 19 15 33 33 H 1.08991 * 109.38175 * 326.83196 * 20 19 15 34 34 H 1.09000 * 109.42520 * 150.48608 * 21 20 19 35 35 H 1.08997 * 109.43342 * 30.63475 * 21 20 19 36 36 H 1.08998 * 109.27065 * 301.15666 * 22 21 20 37 37 H 1.08997 * 109.27099 * 181.68544 * 22 21 20 38 38 H 1.08997 * 109.45936 * 273.39589 * 23 22 21 39 39 H 1.09008 * 109.45574 * 153.46080 * 23 22 21 40 40 H 1.09004 * 109.53677 * 346.67490 * 24 18 17 41 41 H 1.09000 * 109.54103 * 106.83533 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1071 1.3948 5 1 3.5964 1.4121 -0.5920 6 1 1.5043 2.6199 -0.8027 7 6 2.0102 -1.2022 -0.0005 8 1 3.0801 -1.2080 0.1463 9 7 1.3382 -2.3806 -0.1873 10 6 -0.0658 -2.5102 -0.6177 11 6 -0.1548 -3.9160 -1.2624 12 6 0.7885 -4.7393 -0.3460 13 6 1.8994 -3.7263 0.0021 14 1 2.7537 -3.8682 -0.6597 15 6 2.3232 -3.9076 1.4369 16 7 1.6502 -3.5447 2.4967 17 7 2.3078 -3.8605 3.5577 18 6 3.4245 -4.4404 3.2214 19 7 3.4679 -4.4810 1.8692 20 6 4.5573 -5.0110 1.0484 21 6 5.2837 -6.1136 1.8238 22 6 6.4145 -5.5031 2.6505 23 6 5.8578 -4.5114 3.6675 24 6 4.4821 -4.9851 4.1462 25 1 -0.4851 0.8401 -0.0004 26 1 -0.7336 -2.4438 0.2412 27 1 -0.3107 -1.7409 -1.3500 28 1 -1.1737 -4.3010 -1.2210 29 1 0.2129 -3.8993 -2.2883 30 1 0.2647 -5.0665 0.5521 31 1 1.1998 -5.5935 -0.8838 32 1 5.2591 -4.2123 0.8086 33 1 4.1477 -5.4240 0.1267 34 1 5.6978 -6.8377 1.1221 35 1 4.5792 -6.6147 2.4875 36 1 7.1072 -4.9863 1.9864 37 1 6.9453 -6.2971 3.1758 38 1 5.7624 -3.5300 3.2030 39 1 6.5354 -4.4454 4.5188 40 1 4.3033 -4.6221 5.1583 41 1 4.4474 -6.0745 4.1382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069623825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:04 Heat of formation + Delta-G solvation = 75.598146 kcal Electronic energy + Delta-G solvation = -22570.184638 eV Core-core repulsion = 19485.855891 eV Total energy + Delta-G solvation = -3084.328747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.09474 -39.20891 -38.56409 -35.17924 -34.52725 -32.61474 -31.57316 -31.02129 -28.90756 -27.06051 -26.54112 -25.53069 -23.53686 -21.97160 -21.39367 -21.01296 -20.79303 -18.84132 -17.87218 -17.36064 -16.99307 -16.31177 -16.10243 -15.89037 -15.75648 -15.11360 -14.69386 -14.17408 -13.94277 -13.81867 -13.71688 -13.47757 -13.03599 -12.89384 -12.88323 -12.75440 -12.31705 -12.23857 -12.05824 -11.96372 -11.93240 -11.83509 -11.58866 -11.53349 -11.42302 -10.95539 -10.81646 -10.72003 -9.87385 -8.92446 -7.91107 -5.26391 1.01671 1.37110 1.40147 1.48436 1.72422 2.05617 2.44361 3.25020 3.35892 3.57118 3.64834 3.66782 3.73820 3.88604 3.95950 4.13234 4.18305 4.22467 4.24319 4.32268 4.43379 4.56426 4.66570 4.80719 4.81312 4.85748 4.95689 5.00322 5.08821 5.13782 5.15827 5.18539 5.30708 5.35836 5.36196 5.40429 5.44528 5.63604 5.77193 6.14072 6.21983 7.03733 7.70167 8.00347 8.36469 9.20423 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.006538 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.318279 B = 4281.353003 C = 5015.321868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.299 1.299 5 H -0.264 1.264 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.176 3.824 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.232 3.768 14 H 0.073 0.927 15 C 0.177 3.823 16 N -0.337 5.337 17 N -0.360 5.360 18 C 0.167 3.833 19 N -0.467 5.467 20 C 0.092 3.908 21 C -0.130 4.130 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.028 4.028 25 H 0.248 0.752 26 H -0.015 1.015 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.607 -17.348 0.065 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.227 1.227 5 H -0.188 1.188 6 H -0.210 1.210 7 C -0.362 4.362 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.051 3.949 11 C -0.166 4.166 12 C -0.143 4.143 13 C 0.121 3.879 14 H 0.091 0.909 15 C -0.095 4.095 16 N -0.175 5.175 17 N -0.200 5.200 18 C -0.102 4.102 19 N -0.159 5.159 20 C -0.029 4.029 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.067 4.067 25 H 0.057 0.943 26 H 0.004 0.996 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.446 -16.532 0.892 21.328 hybrid contribution 0.682 1.319 -0.199 1.498 sum 14.128 -15.212 0.693 20.773 Atomic orbital electron populations 1.70169 1.06288 1.25376 1.56926 1.25615 0.96432 1.00975 1.02110 0.85205 0.78328 0.79813 0.76826 1.22680 1.18816 1.21020 1.19067 0.90581 0.83950 1.42602 0.91682 1.44771 1.10132 0.99688 1.76467 1.21265 0.84218 0.94404 0.94986 1.22875 0.99923 0.94735 0.99032 1.22512 0.95380 0.96952 0.99474 1.19866 0.96889 0.87481 0.83666 0.90929 1.26592 0.85271 0.97028 1.00571 1.74274 1.27112 1.20831 0.95314 1.74068 1.05839 1.17221 1.22826 1.25392 0.98602 1.02368 0.83865 1.46440 1.17087 1.45370 1.06987 1.22393 0.87131 0.98518 0.94842 1.22024 0.98046 0.96526 1.00127 1.21596 0.97267 0.99119 0.97470 1.21619 0.94771 0.98624 1.00854 1.20371 0.88951 1.01820 0.95570 0.94284 0.99639 0.94045 0.89685 0.89697 0.92958 0.87023 0.89763 0.87304 0.86468 0.90793 0.90640 0.88403 0.94758 0.88164 0.88897 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.62 10.69 21.65 0.23 -59.38 16 2 C -0.06 -3.43 5.40 84.86 0.46 -2.97 16 3 Si 0.97 48.33 29.56 68.60 2.03 50.36 16 4 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.23 -13.64 9.91 84.03 0.83 -12.81 16 8 H 0.07 3.76 7.85 -2.91 -0.02 3.73 16 9 N -0.59 -31.07 3.12 -672.38 -2.09 -33.16 16 10 C 0.18 9.03 5.41 86.86 0.47 9.50 16 11 C -0.13 -4.58 7.08 31.99 0.23 -4.35 16 12 C -0.10 -3.54 6.46 31.78 0.21 -3.34 16 13 C 0.23 9.61 3.44 44.59 0.15 9.76 16 14 H 0.07 2.64 7.33 -2.39 -0.02 2.62 16 15 C 0.18 7.74 6.45 138.04 0.89 8.63 16 16 N -0.34 -17.76 12.22 -50.28 -0.61 -18.38 16 17 N -0.36 -17.03 12.22 -50.39 -0.62 -17.65 16 18 C 0.17 5.89 6.92 138.10 0.96 6.85 16 19 N -0.47 -15.72 3.05 -504.74 -1.54 -17.26 16 20 C 0.09 1.95 6.06 86.45 0.52 2.48 16 21 C -0.13 -1.66 5.55 30.57 0.17 -1.49 16 22 C -0.12 -1.30 5.67 30.38 0.17 -1.13 16 23 C -0.12 -2.07 5.68 30.51 0.17 -1.89 16 24 C -0.03 -0.62 5.55 29.90 0.17 -0.45 16 25 H 0.25 15.24 8.31 -92.70 -0.77 14.47 16 26 H -0.01 -0.87 8.06 -2.38 -0.02 -0.89 16 27 H 0.04 2.32 6.97 -2.39 -0.02 2.31 16 28 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.05 1.96 7.85 -2.39 -0.02 1.94 16 31 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.08 1.79 7.82 -2.39 -0.02 1.77 16 33 H 0.11 1.93 7.58 -2.39 -0.02 1.91 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 1.09 5.69 -2.39 -0.01 1.07 16 36 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.03 0.81 7.84 -2.39 -0.02 0.80 16 39 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.12 1.89 6.34 -2.39 -0.02 1.87 16 Total: -1.00 -84.63 318.49 3.81 -80.82 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.02 Total: 5.87 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.40 Total: 8.78 kcal Atomic # 7 Polarization: -141.20 SS G_CDS: -4.63 Total: -145.83 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -84.63 3.81 -80.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069623825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.423 kcal (2) G-P(sol) polarization free energy of solvation -84.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds