Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46704 * 2 1 4 4 C 1.34946 * 126.03304 * 124.99912 * 3 2 1 5 5 C 1.35317 * 107.74382 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.04271 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46884 * 90.00079 * 6 5 4 8 8 C 1.46897 * 111.00243 * 293.95903 * 7 6 5 9 9 C 1.46903 * 110.99959 * 169.99899 * 7 6 5 10 10 C 1.52993 * 109.47251 * 284.22029 * 9 7 6 11 11 H 1.08996 * 109.47453 * 55.44831 * 10 9 7 12 12 C 1.47206 * 109.47221 * 295.44710 * 10 9 7 13 13 N 8.20213 * 125.49978 * 342.27098 * 2 1 3 14 14 C 1.53007 * 109.47129 * 175.45170 * 10 9 7 15 15 C 1.50693 * 109.47215 * 184.99917 * 14 10 9 16 16 H 1.07999 * 120.00046 * 359.97438 * 15 14 10 17 17 C 1.37881 * 120.00105 * 179.97438 * 15 14 10 18 18 N 1.31513 * 119.99654 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00131 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47193 * 59.99833 * 19 17 15 21 21 H 1.48492 * 109.47057 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46726 * 299.99878 * 19 17 15 23 23 C 1.39867 * 107.92347 * 0.02562 * 5 4 3 24 24 N 1.30839 * 108.19980 * 0.02562 * 23 5 4 25 25 H 1.08997 * 109.46871 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47123 * 299.99685 * 1 2 3 27 27 H 1.08996 * 109.47425 * 60.00269 * 1 2 3 28 28 H 1.08994 * 109.47123 * 240.00314 * 2 1 3 29 29 H 1.08997 * 109.46951 * 119.99490 * 2 1 3 30 30 H 1.07999 * 126.13262 * 359.75672 * 4 3 2 31 31 H 1.08990 * 109.47546 * 210.00391 * 6 5 4 32 32 H 1.09000 * 109.46753 * 330.00945 * 6 5 4 33 33 H 1.08998 * 109.46972 * 65.39233 * 8 7 6 34 34 H 1.09002 * 109.47164 * 185.39422 * 8 7 6 35 35 H 1.08997 * 109.46930 * 305.39294 * 8 7 6 36 36 H 1.09004 * 109.46326 * 44.22010 * 9 7 6 37 37 H 1.09002 * 109.46978 * 164.21348 * 9 7 6 38 38 H 1.09001 * 109.46684 * 304.99768 * 14 10 9 39 39 H 1.08994 * 109.47002 * 64.99284 * 14 10 9 40 40 H 0.96998 * 119.99430 * 180.02562 * 18 17 15 41 41 H 1.07994 * 125.90473 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0711 3.2138 0.5464 6 6 3.9537 4.2004 1.2667 7 7 5.3105 4.1434 0.7065 8 6 5.9399 2.8451 0.9822 9 6 6.1364 5.2473 1.2139 10 6 5.7399 6.5464 0.5098 11 1 4.6710 6.7173 0.6375 12 6 6.0521 6.4419 -0.9250 13 7 6.2930 6.3604 -2.0334 14 6 6.5194 7.7144 1.1175 15 6 6.0409 9.0078 0.5102 16 1 5.2594 8.9979 -0.2351 17 6 6.6010 10.2040 0.9059 18 7 7.5531 10.2160 1.8131 19 14 6.0074 11.8074 0.1535 20 1 4.5592 11.9793 0.4334 21 1 6.7640 12.9409 0.7433 22 1 6.2275 11.7766 -1.3148 23 6 2.3110 3.4730 -0.5988 24 7 1.6788 2.3754 -0.9267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.3158 1.4138 1.7382 31 1 3.5514 5.2058 1.1429 32 1 3.9878 3.9506 2.3271 33 1 5.3980 2.0595 0.4556 34 1 6.9751 2.8635 0.6415 35 1 5.9136 2.6489 2.0540 36 1 5.9806 5.3537 2.2875 37 1 7.1874 5.0342 1.0187 38 1 6.3578 7.7373 2.1953 39 1 7.5823 7.5877 0.9122 40 1 7.9468 11.0576 2.0917 41 1 2.2549 4.4163 -1.1215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073002653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = 98.453529 kcal Electronic energy + Delta-G solvation = -20726.966528 eV Core-core repulsion = 17643.628865 eV Total energy + Delta-G solvation = -3083.337663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25369 -37.95239 -35.65651 -34.57017 -33.52385 -31.79434 -30.53086 -30.08150 -27.38431 -26.42241 -24.32031 -23.79718 -21.71706 -21.50912 -20.77554 -19.95739 -17.14833 -16.65413 -16.35796 -15.64943 -15.17484 -14.93759 -14.66612 -14.36168 -14.23199 -14.00397 -13.22243 -13.00205 -12.92120 -12.63816 -12.48256 -12.39834 -12.29734 -11.86386 -11.72244 -11.58156 -11.43311 -11.35407 -11.14930 -10.99727 -10.62954 -10.53501 -10.46803 -10.10779 -9.48222 -9.42020 -9.19414 -8.47758 -8.41254 -8.03770 -6.05971 -4.08684 1.85080 2.42280 2.80824 3.34247 3.38254 3.42409 3.82658 3.93596 4.22598 4.30917 4.46058 4.62119 4.70321 4.84259 4.99175 4.99380 5.14646 5.21086 5.32227 5.34013 5.40977 5.49262 5.53633 5.68690 5.74293 5.80706 5.90612 5.92916 5.99903 6.09115 6.17453 6.43591 6.57100 6.67653 6.95848 7.26287 7.27973 7.47193 7.58194 7.70910 7.89709 8.27910 8.68827 8.96160 9.56562 11.04969 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.003395 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.624818 B = 8244.615163 C = 8579.701455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.377 5.377 4 C 0.053 3.947 5 C -0.219 4.219 6 C 0.128 3.872 7 N -0.542 5.542 8 C 0.029 3.971 9 C 0.062 3.938 10 C 0.012 3.988 11 H 0.100 0.900 12 C 0.258 3.742 13 N -0.483 5.483 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.069 3.931 24 N -0.300 5.300 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.167 0.833 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 -20.607 3.862 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.160 5.160 4 C -0.093 4.093 5 C -0.231 4.231 6 C 0.000 4.000 7 N -0.265 5.265 8 C -0.119 4.119 9 C -0.067 4.067 10 C -0.010 4.010 11 H 0.117 0.883 12 C -0.059 4.059 13 N -0.160 5.160 14 C -0.007 4.007 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.118 4.118 24 N -0.121 5.121 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.184 0.816 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.819 -21.277 0.958 23.888 hybrid contribution 0.353 1.238 1.493 1.971 sum -10.466 -20.039 2.451 22.740 Atomic orbital electron populations 1.22049 0.93926 1.02642 1.03647 1.21613 0.95978 0.77842 1.03457 1.48616 1.35915 1.09999 1.21507 1.22286 0.95872 0.94699 0.96455 1.19961 1.06879 0.94873 1.01349 1.20416 0.87212 0.98027 0.94358 1.61988 1.02093 1.02713 1.59754 1.22334 0.99520 0.91690 0.98346 1.22257 0.97465 0.89572 0.97402 1.19221 1.02884 0.96340 0.82524 0.88259 1.28899 0.91949 0.90357 0.94659 1.81029 1.10350 1.11403 1.13191 1.19167 0.95335 0.89707 0.96527 1.21119 1.20831 0.91096 1.23261 0.92518 1.24948 0.94853 0.99212 0.94945 1.69929 1.25789 1.26819 1.30625 0.86665 0.78933 0.82909 0.79650 1.20038 1.21254 1.20227 1.23824 0.94913 0.97359 0.95695 1.77323 1.24248 0.96933 1.13638 0.90917 0.92115 0.91053 0.90033 0.88949 0.81571 0.89306 0.94219 0.91897 0.91798 0.95934 0.92659 0.90429 0.94497 0.95662 0.92797 0.80096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.10 37.16 0.38 -0.69 16 2 C 0.13 0.91 7.23 -4.04 -0.03 0.89 16 3 N -0.38 -4.07 3.68 -61.37 -0.23 -4.30 16 4 C 0.05 0.54 10.12 -17.22 -0.17 0.37 16 5 C -0.22 -2.64 4.99 -105.05 -0.52 -3.16 16 6 C 0.13 1.53 5.28 -4.97 -0.03 1.51 16 7 N -0.54 -7.32 4.37 -244.37 -1.07 -8.39 16 8 C 0.03 0.33 9.17 60.06 0.55 0.89 16 9 C 0.06 0.91 4.37 -3.83 -0.02 0.89 16 10 C 0.01 0.23 2.27 -93.40 -0.21 0.02 16 11 H 0.10 1.71 6.67 -51.93 -0.35 1.37 16 12 C 0.26 5.48 13.66 -20.72 -0.28 5.20 16 13 N -0.48 -11.20 18.55 42.20 0.78 -10.42 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -13.98 8.60 -34.44 -0.30 -14.28 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.07 0.92 11.96 -17.37 -0.21 0.71 16 24 N -0.30 -4.10 12.42 30.62 0.38 -3.72 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.39 8.07 -51.93 -0.42 -0.03 16 30 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.09 1.10 6.57 -51.93 -0.34 0.76 16 32 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.06 0.71 6.65 -51.93 -0.35 0.36 16 34 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 35 H 0.02 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.06 0.74 8.00 -51.93 -0.42 0.32 16 37 H 0.08 1.16 7.74 -51.93 -0.40 0.76 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.18 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -32.58 349.34 -6.65 -39.23 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.43 Total: -3.75 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.06 Total: -5.45 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.61 Total: -51.67 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.58 -6.65 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.684 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds