Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46704 * 2 1 4 4 C 1.34946 * 126.03304 * 124.99912 * 3 2 1 5 5 C 1.35317 * 107.74382 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.04271 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46884 * 90.00079 * 6 5 4 8 8 C 1.46897 * 111.00243 * 293.95903 * 7 6 5 9 9 C 1.46903 * 110.99959 * 169.99899 * 7 6 5 10 10 C 1.52993 * 109.47251 * 284.22029 * 9 7 6 11 11 H 1.08996 * 109.47453 * 55.44831 * 10 9 7 12 12 C 1.47206 * 109.47221 * 295.44710 * 10 9 7 13 13 N 8.20213 * 125.49978 * 342.27098 * 2 1 3 14 14 C 1.53007 * 109.47129 * 175.45170 * 10 9 7 15 15 C 1.50693 * 109.47215 * 184.99917 * 14 10 9 16 16 H 1.07999 * 120.00046 * 359.97438 * 15 14 10 17 17 C 1.37881 * 120.00105 * 179.97438 * 15 14 10 18 18 N 1.31513 * 119.99654 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00131 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47193 * 59.99833 * 19 17 15 21 21 H 1.48492 * 109.47057 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46726 * 299.99878 * 19 17 15 23 23 C 1.39867 * 107.92347 * 0.02562 * 5 4 3 24 24 N 1.30839 * 108.19980 * 0.02562 * 23 5 4 25 25 H 1.08997 * 109.46871 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47123 * 299.99685 * 1 2 3 27 27 H 1.08996 * 109.47425 * 60.00269 * 1 2 3 28 28 H 1.08994 * 109.47123 * 240.00314 * 2 1 3 29 29 H 1.08997 * 109.46951 * 119.99490 * 2 1 3 30 30 H 1.07999 * 126.13262 * 359.75672 * 4 3 2 31 31 H 1.08990 * 109.47546 * 210.00391 * 6 5 4 32 32 H 1.09000 * 109.46753 * 330.00945 * 6 5 4 33 33 H 1.08998 * 109.46972 * 65.39233 * 8 7 6 34 34 H 1.09002 * 109.47164 * 185.39422 * 8 7 6 35 35 H 1.08997 * 109.46930 * 305.39294 * 8 7 6 36 36 H 1.09004 * 109.46326 * 44.22010 * 9 7 6 37 37 H 1.09002 * 109.46978 * 164.21348 * 9 7 6 38 38 H 1.09001 * 109.46684 * 304.99768 * 14 10 9 39 39 H 1.08994 * 109.47002 * 64.99284 * 14 10 9 40 40 H 0.96998 * 119.99430 * 180.02562 * 18 17 15 41 41 H 1.07994 * 125.90473 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0711 3.2138 0.5464 6 6 3.9537 4.2004 1.2667 7 7 5.3105 4.1434 0.7065 8 6 5.9399 2.8451 0.9822 9 6 6.1364 5.2473 1.2139 10 6 5.7399 6.5464 0.5098 11 1 4.6710 6.7173 0.6375 12 6 6.0521 6.4419 -0.9250 13 7 6.2930 6.3604 -2.0334 14 6 6.5194 7.7144 1.1175 15 6 6.0409 9.0078 0.5102 16 1 5.2594 8.9979 -0.2351 17 6 6.6010 10.2040 0.9059 18 7 7.5531 10.2160 1.8131 19 14 6.0074 11.8074 0.1535 20 1 4.5592 11.9793 0.4334 21 1 6.7640 12.9409 0.7433 22 1 6.2275 11.7766 -1.3148 23 6 2.3110 3.4730 -0.5988 24 7 1.6788 2.3754 -0.9267 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.3158 1.4138 1.7382 31 1 3.5514 5.2058 1.1429 32 1 3.9878 3.9506 2.3271 33 1 5.3980 2.0595 0.4556 34 1 6.9751 2.8635 0.6415 35 1 5.9136 2.6489 2.0540 36 1 5.9806 5.3537 2.2875 37 1 7.1874 5.0342 1.0187 38 1 6.3578 7.7373 2.1953 39 1 7.5823 7.5877 0.9122 40 1 7.9468 11.0576 2.0917 41 1 2.2549 4.4163 -1.1215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073002653.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = 78.189525 kcal Electronic energy + Delta-G solvation = -20727.845241 eV Core-core repulsion = 17643.628865 eV Total energy + Delta-G solvation = -3084.216376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09499 -39.18164 -37.14489 -35.50433 -35.19108 -33.49644 -31.50990 -30.84003 -28.89398 -27.42780 -25.69032 -24.55985 -23.51453 -22.61718 -21.55078 -20.82548 -18.48545 -18.24713 -17.67277 -16.67075 -16.45303 -16.02440 -15.92571 -15.52182 -15.17199 -14.90034 -14.55802 -14.34830 -14.22665 -13.68804 -13.67386 -13.59395 -13.27585 -13.07134 -12.96719 -12.93624 -12.63802 -12.60298 -12.42201 -12.35466 -12.30988 -12.14303 -11.75870 -11.40067 -11.26618 -11.07024 -10.51357 -10.27904 -9.34863 -8.98434 -8.16193 -6.23676 1.03532 1.42759 1.44646 1.51486 1.72956 1.87325 2.13436 2.21571 2.44327 3.19168 3.25724 3.45211 3.65736 4.02594 4.11938 4.19204 4.23215 4.29920 4.37737 4.43404 4.56629 4.63943 4.74763 4.81924 4.84028 4.88404 4.91383 5.00951 5.06800 5.08178 5.15096 5.25473 5.30897 5.51770 5.67796 5.76314 5.83715 6.18192 6.24303 6.31295 6.34301 6.82985 6.87839 7.00669 7.44472 8.94502 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.003395 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.624818 B = 8244.615163 C = 8579.701455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 N -0.376 5.376 4 C 0.068 3.932 5 C -0.237 4.237 6 C 0.132 3.868 7 N -0.560 5.560 8 C 0.033 3.967 9 C 0.073 3.927 10 C 0.022 3.978 11 H 0.115 0.885 12 C 0.269 3.731 13 N -0.521 5.521 14 C 0.039 3.961 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.945 3.055 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.046 3.954 24 N -0.335 5.335 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.205 0.795 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.000 1.000 40 H 0.264 0.736 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 -22.313 5.294 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 N -0.159 5.159 4 C -0.080 4.080 5 C -0.248 4.248 6 C 0.004 3.996 7 N -0.284 5.284 8 C -0.115 4.115 9 C -0.056 4.056 10 C 0.000 4.000 11 H 0.133 0.867 12 C -0.047 4.047 13 N -0.199 5.199 14 C 0.000 4.000 15 C -0.576 4.576 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.771 3.229 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.209 1.209 23 C -0.139 4.139 24 N -0.158 5.158 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.147 0.853 30 H 0.221 0.779 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.509 -22.999 2.383 25.828 hybrid contribution 0.530 1.676 1.042 2.043 sum -10.979 -21.322 3.425 24.226 Atomic orbital electron populations 1.22003 0.93817 1.03854 1.02043 1.22014 0.96148 0.76160 1.05426 1.48970 1.35486 1.10703 1.20730 1.22805 0.94541 0.94071 0.96546 1.20023 1.07493 0.95957 1.01365 1.20388 0.86165 0.97649 0.95387 1.61887 1.02725 1.03198 1.60611 1.22319 0.98933 0.90388 0.99862 1.22059 0.97423 0.88204 0.97889 1.19214 1.02992 0.96938 0.80825 0.86731 1.29461 0.90855 0.89201 0.95147 1.81024 1.11661 1.12766 1.14470 1.18986 0.94277 0.90207 0.96533 1.21541 1.20440 0.92750 1.22908 0.92937 1.25680 0.95167 1.02299 0.95504 1.70019 1.26887 1.27535 1.31873 0.85797 0.79156 0.79618 0.78299 1.18721 1.20712 1.20873 1.23913 0.95876 0.97410 0.96702 1.77251 1.25377 0.97802 1.15333 0.88290 0.92728 0.93569 0.89680 0.85327 0.77862 0.90344 0.92087 0.91689 0.92411 0.93574 0.90589 0.90786 0.94433 0.98140 0.92746 0.80835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.10 71.98 0.73 -1.06 16 2 C 0.12 1.36 7.23 86.38 0.62 1.99 16 3 N -0.38 -7.40 3.68 -348.06 -1.28 -8.68 16 4 C 0.07 1.18 10.12 83.54 0.85 2.03 16 5 C -0.24 -5.32 4.99 -20.14 -0.10 -5.42 16 6 C 0.13 2.87 5.28 85.56 0.45 3.32 16 7 N -0.56 -14.01 4.37 -927.06 -4.05 -18.06 16 8 C 0.03 0.65 9.17 127.69 1.17 1.82 16 9 C 0.07 2.03 4.37 86.30 0.38 2.41 16 10 C 0.02 0.80 2.27 -12.60 -0.03 0.78 16 11 H 0.12 3.83 6.67 -2.39 -0.02 3.82 16 12 C 0.27 11.43 13.66 89.43 1.22 12.66 16 13 N -0.52 -24.42 18.55 20.02 0.37 -24.05 16 14 C 0.04 1.78 4.42 29.85 0.13 1.91 16 15 C -0.54 -28.68 8.60 25.60 0.22 -28.46 16 16 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 17 C 0.01 0.68 5.46 84.66 0.46 1.14 16 18 N -0.92 -53.07 13.29 21.45 0.28 -52.78 16 19 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 C 0.05 1.25 11.96 85.24 1.02 2.27 16 24 N -0.34 -9.12 12.42 -57.03 -0.71 -9.82 16 25 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.13 0.52 8.07 -2.39 -0.02 0.51 16 30 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.08 1.84 6.57 -2.39 -0.02 1.82 16 32 H 0.06 1.07 8.07 -2.39 -0.02 1.05 16 33 H 0.06 1.27 6.65 -2.39 -0.02 1.25 16 34 H 0.06 1.21 7.84 -2.39 -0.02 1.19 16 35 H 0.05 0.71 8.07 -2.39 -0.02 0.69 16 36 H 0.08 1.81 8.00 -2.38 -0.02 1.80 16 37 H 0.07 2.11 7.74 -2.39 -0.02 2.09 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 40 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.17 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -70.78 349.34 4.77 -66.01 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.00 Total: 6.20 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 7.12 Total: -4.61 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -5.38 Total: -113.39 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.78 4.77 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073002653.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.203 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds