Wall clock time and date at job start Mon Mar 30 2020 01:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35670 * 117.00308 * 2 1 4 4 C 1.38914 * 119.68536 * 180.02562 * 3 2 1 5 5 C 1.38382 * 119.11677 * 179.97438 * 4 3 2 6 6 C 1.38829 * 118.48097 * 359.73963 * 5 4 3 7 7 C 1.38051 * 119.28824 * 0.52519 * 6 5 4 8 8 C 1.50700 * 119.58200 * 179.73370 * 7 6 5 9 9 N 1.46505 * 109.47295 * 94.72791 * 8 7 6 10 10 C 1.36939 * 119.99794 * 89.99570 * 9 8 7 11 11 H 1.07997 * 119.99603 * 217.23880 * 10 9 8 12 12 C 1.38808 * 119.99680 * 36.97055 * 10 9 8 13 13 N 1.31617 * 120.00274 * 21.39148 * 12 10 9 14 14 Si 1.86806 * 119.99777 * 201.39238 * 12 10 9 15 15 H 1.48501 * 109.46763 * 89.99783 * 14 12 10 16 16 H 1.48498 * 109.47176 * 209.99968 * 14 12 10 17 17 H 1.48498 * 109.47053 * 330.00174 * 14 12 10 18 18 C 1.46499 * 120.00118 * 270.00339 * 9 8 7 19 19 C 1.54266 * 110.03198 * 241.21406 * 18 9 8 20 20 C 1.54961 * 104.15923 * 217.13543 * 19 18 9 21 21 C 1.54887 * 102.78065 * 37.88363 * 20 19 18 22 22 C 1.53874 * 110.03515 * 123.99436 * 18 9 8 23 23 N 1.31959 * 120.83614 * 359.45770 * 7 6 5 24 24 H 1.09003 * 109.46752 * 60.00090 * 1 2 3 25 25 H 1.08990 * 109.47477 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47159 * 300.00813 * 1 2 3 27 27 H 1.08001 * 120.44461 * 359.96179 * 4 3 2 28 28 H 1.07997 * 120.76325 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.35631 * 180.25676 * 6 5 4 30 30 H 1.09003 * 109.47181 * 334.72686 * 8 7 6 31 31 H 1.09003 * 109.47407 * 214.72899 * 8 7 6 32 32 H 0.97003 * 120.00035 * 174.94090 * 13 12 10 33 33 H 1.09005 * 110.01387 * 2.59897 * 18 9 8 34 34 H 1.09004 * 110.48419 * 335.77917 * 19 18 9 35 35 H 1.09000 * 110.48608 * 98.42504 * 19 18 9 36 36 H 1.09002 * 110.71716 * 279.56865 * 20 19 18 37 37 H 1.09003 * 110.92443 * 156.29558 * 20 19 18 38 38 H 1.08999 * 110.49128 * 203.40557 * 21 20 19 39 39 H 1.09003 * 110.59385 * 80.81402 * 21 20 19 40 40 H 1.09001 * 110.02945 * 238.57057 * 22 18 9 41 41 H 1.09002 * 110.03259 * 359.95009 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4327 1.2738 -0.0005 5 6 4.0487 2.5129 -0.0011 6 6 3.2507 3.6490 -0.0066 7 6 1.8773 3.5096 -0.0003 8 6 1.0048 4.7383 -0.0002 9 7 0.6234 5.0666 -1.3760 10 6 -0.5181 4.5360 -1.9152 11 1 -0.5383 4.2414 -2.9540 12 6 -1.6475 4.3717 -1.1250 13 7 -1.7882 5.0776 -0.0232 14 14 -2.9677 3.1485 -1.6256 15 1 -2.6635 1.8216 -1.0323 16 1 -4.2888 3.6184 -1.1367 17 1 -3.0000 3.0332 -3.1058 18 6 1.4631 5.9624 -2.1751 19 6 0.6622 7.2177 -2.5785 20 6 1.1488 7.5322 -4.0157 21 6 1.3181 6.1232 -4.6362 22 6 1.8804 5.2669 -3.4828 23 7 1.3187 2.3140 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0229 0.3693 -0.0003 28 1 5.1256 2.5944 -0.0019 29 1 3.6996 4.6312 -0.0113 30 1 1.5541 5.5739 0.4338 31 1 0.1083 4.5474 0.5897 32 1 -2.6091 5.0173 0.4900 33 1 2.3475 6.2505 -1.6067 34 1 -0.4069 7.0052 -2.5759 35 1 0.8890 8.0467 -1.9080 36 1 2.1016 8.0614 -3.9930 37 1 0.4019 8.1079 -4.5623 38 1 2.0230 6.1543 -5.4670 39 1 0.3562 5.7322 -4.9676 40 1 2.9673 5.2183 -3.5494 41 1 1.4588 4.2625 -3.5225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:57 Heat of formation + Delta-G solvation = -4.019576 kcal Electronic energy + Delta-G solvation = -22409.523370 eV Core-core repulsion = 19289.449388 eV Total energy + Delta-G solvation = -3120.073981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.41139 -39.43759 -38.66254 -36.03345 -33.48560 -32.94680 -31.64516 -29.33568 -28.87106 -28.16846 -27.24651 -24.63281 -23.71771 -22.58880 -21.29754 -20.75654 -19.05939 -18.24690 -17.58491 -16.94998 -16.91403 -16.76742 -16.35367 -15.92715 -15.27748 -15.19306 -14.91984 -14.58025 -14.07830 -14.03825 -13.88472 -13.19396 -13.04693 -12.90364 -12.85635 -12.50159 -12.30318 -12.24483 -12.01873 -11.91519 -11.78098 -11.70395 -11.65981 -11.32036 -11.14749 -10.63570 -10.44920 -10.28775 -9.28106 -8.44525 -7.79654 -5.33403 0.36616 0.55733 1.39648 1.44149 1.48303 2.23480 2.51015 2.95574 3.31960 3.52513 3.76397 4.01133 4.02185 4.14852 4.29027 4.32820 4.33032 4.34322 4.40885 4.52114 4.69527 4.72333 4.79038 4.84394 4.92309 4.96953 4.99697 5.03516 5.19877 5.22153 5.26954 5.33776 5.38899 5.53525 5.59503 5.66232 5.73719 5.77236 5.88521 6.34908 6.55281 7.22339 7.28085 7.94052 8.43135 9.19642 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.008625 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.624448 B = 3245.628354 C = 4543.315682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.320 6.320 3 C 0.282 3.718 4 C -0.209 4.209 5 C -0.034 4.034 6 C -0.212 4.212 7 C 0.153 3.847 8 C 0.184 3.816 9 N -0.574 5.574 10 C -0.231 4.231 11 H 0.041 0.959 12 C -0.018 4.018 13 N -0.911 5.911 14 Si 0.932 3.068 15 H -0.286 1.286 16 H -0.294 1.294 17 H -0.278 1.278 18 C 0.164 3.836 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.126 4.126 23 N -0.550 5.550 24 H 0.032 0.968 25 H 0.127 0.873 26 H 0.041 0.959 27 H 0.158 0.842 28 H 0.179 0.821 29 H 0.150 0.850 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.249 0.751 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.067 0.933 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.715 -2.090 -2.109 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.228 6.228 3 C 0.103 3.897 4 C -0.230 4.230 5 C -0.060 4.060 6 C -0.232 4.232 7 C 0.014 3.986 8 C 0.057 3.943 9 N -0.292 5.292 10 C -0.361 4.361 11 H 0.059 0.941 12 C -0.215 4.215 13 N -0.556 5.556 14 Si 0.762 3.238 15 H -0.213 1.213 16 H -0.221 1.221 17 H -0.203 1.203 18 C 0.058 3.942 19 C -0.167 4.167 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.165 4.165 23 N -0.274 5.274 24 H 0.051 0.949 25 H 0.145 0.855 26 H 0.060 0.940 27 H 0.176 0.824 28 H 0.197 0.803 29 H 0.167 0.833 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.777 -2.444 -1.967 11.224 hybrid contribution -0.889 -0.640 -0.048 1.096 sum 9.888 -3.084 -2.015 10.552 Atomic orbital electron populations 1.22795 0.77228 1.03738 1.00954 1.86130 1.22957 1.25233 1.88502 1.20429 0.90596 0.84872 0.93785 1.21253 0.90795 1.00903 1.10034 1.21744 1.01791 0.90025 0.92398 1.22053 0.93378 1.01120 1.06681 1.22449 0.93574 0.92580 0.89999 1.19876 0.96854 0.89127 0.88481 1.43918 1.23343 1.51020 1.10952 1.18709 0.89053 1.33479 0.94884 0.94116 1.25471 0.98488 0.99574 0.98000 1.69953 1.25923 1.41053 1.18651 0.85825 0.79348 0.80794 0.77796 1.21305 1.22088 1.20322 1.21312 0.92299 0.89050 0.91570 1.22694 1.00159 0.97465 0.96397 1.22393 1.01192 0.96303 0.94973 1.22221 0.99925 0.95629 0.97381 1.22454 0.99511 0.98576 0.95949 1.67194 1.42075 0.99277 1.18876 0.94899 0.85454 0.93971 0.82419 0.80332 0.83275 0.92502 0.90806 0.94183 0.91543 0.93963 0.92866 0.89970 0.91891 0.90411 0.94087 0.91409 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.70 10.38 113.37 1.18 2.88 16 2 O -0.32 -11.86 10.48 -89.86 -0.94 -12.80 16 3 C 0.28 11.00 7.49 84.79 0.63 11.63 16 4 C -0.21 -6.34 10.04 22.47 0.23 -6.11 16 5 C -0.03 -0.91 10.17 22.45 0.23 -0.68 16 6 C -0.21 -6.82 9.71 22.37 0.22 -6.60 16 7 C 0.15 6.42 6.36 42.50 0.27 6.69 16 8 C 0.18 8.57 5.56 85.63 0.48 9.04 16 9 N -0.57 -27.37 2.37 -678.30 -1.61 -28.98 16 10 C -0.23 -12.45 7.75 84.03 0.65 -11.80 16 11 H 0.04 2.31 7.00 -2.91 -0.02 2.29 16 12 C -0.02 -1.00 4.96 84.86 0.42 -0.57 16 13 N -0.91 -52.88 11.42 21.65 0.25 -52.63 16 14 Si 0.93 46.10 29.61 68.60 2.03 48.13 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 16 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 17 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 18 C 0.16 6.45 3.41 45.72 0.16 6.61 16 19 C -0.13 -4.88 6.42 31.69 0.20 -4.68 16 20 C -0.11 -3.30 6.91 31.91 0.22 -3.08 16 21 C -0.11 -3.59 6.83 31.67 0.22 -3.37 16 22 C -0.13 -4.52 6.15 31.32 0.19 -4.32 16 23 N -0.55 -24.79 9.13 -297.00 -2.71 -27.51 16 24 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 25 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 26 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 27 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.06 2.40 7.86 -2.39 -0.02 2.38 16 31 H 0.07 4.09 5.47 -2.39 -0.01 4.08 16 32 H 0.25 14.19 8.32 -92.71 -0.77 13.41 16 33 H 0.07 2.35 7.85 -2.38 -0.02 2.33 16 34 H 0.04 1.98 7.17 -2.39 -0.02 1.96 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.03 1.47 6.79 -2.39 -0.02 1.45 16 Total: -1.00 -65.46 334.31 3.31 -62.15 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.00 Total: 16.01 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.29 Total: -4.37 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -4.07 Total: -109.12 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.94 Total: -12.80 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -65.46 3.31 -62.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.126 kcal (2) G-P(sol) polarization free energy of solvation -65.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds