Wall clock time and date at job start Mon Mar 30 2020 01:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38120 * 120.39771 * 2 1 4 4 C 1.39623 * 118.33202 * 180.02562 * 3 2 1 5 5 N 1.38544 * 120.53140 * 179.97438 * 4 3 2 6 6 C 1.46507 * 119.99878 * 0.02562 * 5 4 3 7 7 C 1.53036 * 109.45637 * 204.99645 * 6 5 4 8 8 C 1.53195 * 109.31024 * 178.61463 * 7 6 5 9 9 N 1.46925 * 108.77517 * 54.63748 * 8 7 6 10 10 C 1.36934 * 120.63215 * 126.41523 * 9 8 7 11 11 H 1.08006 * 120.00121 * 207.65629 * 10 9 8 12 12 C 1.38814 * 119.99947 * 27.65531 * 10 9 8 13 13 N 1.31612 * 120.00200 * 17.38313 * 12 10 9 14 14 Si 1.86798 * 119.99944 * 197.37947 * 12 10 9 15 15 H 1.48506 * 109.47458 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47335 * 120.00061 * 14 12 10 17 17 H 1.48504 * 109.47113 * 240.00357 * 14 12 10 18 18 C 1.46931 * 118.73805 * 306.38913 * 9 8 7 19 19 C 1.53037 * 109.45852 * 84.93138 * 6 5 4 20 20 N 1.32985 * 118.93810 * 0.25716 * 4 3 2 21 21 C 1.31750 * 120.68832 * 359.48557 * 20 4 3 22 22 C 1.50695 * 119.08809 * 180.26479 * 21 20 4 23 23 N 1.31791 * 121.82773 * 0.52656 * 21 20 4 24 24 H 1.08995 * 109.47674 * 89.99764 * 1 2 3 25 25 H 1.08999 * 109.47276 * 209.99518 * 1 2 3 26 26 H 1.09005 * 109.47405 * 329.99748 * 1 2 3 27 27 H 1.07998 * 120.83244 * 0.02562 * 3 2 1 28 28 H 0.96999 * 120.00353 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.44540 * 324.96620 * 6 5 4 30 30 H 1.08999 * 109.50418 * 298.56725 * 7 6 5 31 31 H 1.09000 * 109.49813 * 58.66988 * 7 6 5 32 32 H 1.08996 * 109.58732 * 174.42320 * 8 7 6 33 33 H 1.09007 * 109.58748 * 294.84993 * 8 7 6 34 34 H 0.96996 * 120.00390 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.58954 * 293.82227 * 18 9 8 36 36 H 1.08994 * 109.70320 * 173.46363 * 18 9 8 37 37 H 1.09009 * 109.50135 * 301.33722 * 19 6 5 38 38 H 1.09005 * 109.50285 * 61.39901 * 19 6 5 39 39 H 1.09006 * 109.47289 * 270.25535 * 22 21 20 40 40 H 1.09001 * 109.47201 * 30.25710 * 22 21 20 41 41 H 1.08999 * 109.47154 * 150.25664 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1410 -0.0005 5 7 4.3476 2.3082 -0.0011 6 6 3.6732 3.6089 -0.0006 7 6 4.5992 4.6634 -0.6110 8 6 3.8781 6.0147 -0.6405 9 7 3.4136 6.3325 0.7167 10 6 3.7406 7.5252 1.3046 11 1 3.8071 7.5968 2.3802 12 6 3.9867 8.6423 0.5182 13 7 3.5849 8.6664 -0.7349 14 14 4.8881 10.1113 1.2384 15 1 5.2299 9.8357 2.6570 16 1 6.1334 10.3548 0.4670 17 1 4.0170 11.3117 1.1640 18 6 2.5910 5.3465 1.4308 19 6 3.3265 4.0028 1.4370 20 7 4.2023 -0.0452 -0.0063 21 6 3.4956 -1.1572 -0.0012 22 6 4.2141 -2.4818 -0.0019 23 7 2.1778 -1.1431 -0.0006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6861 2.1380 0.0004 28 1 5.3166 2.2643 -0.0011 29 1 2.7586 3.5437 -0.5899 30 1 5.5034 4.7466 -0.0080 31 1 4.8644 4.3704 -1.6268 32 1 4.5657 6.7884 -0.9819 33 1 3.0239 5.9584 -1.3153 34 1 3.7565 9.4471 -1.2843 35 1 1.6319 5.2358 0.9250 36 1 2.4272 5.6782 2.4561 37 1 2.6860 3.2395 1.8791 38 1 4.2426 4.0916 2.0210 39 1 4.3869 -2.8009 -1.0298 40 1 5.1698 -2.3771 0.5116 41 1 3.6052 -3.2257 0.5120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110825024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:46 Heat of formation + Delta-G solvation = 43.453179 kcal Electronic energy + Delta-G solvation = -21387.045481 eV Core-core repulsion = 18301.322823 eV Total energy + Delta-G solvation = -3085.722657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97638 -39.72705 -37.12289 -35.33348 -34.48289 -32.90304 -31.65618 -30.73428 -29.96020 -28.72052 -26.90448 -24.27219 -23.93212 -22.95949 -22.51372 -21.01441 -19.24890 -18.51221 -17.73483 -16.89510 -16.37044 -16.29185 -16.16780 -15.45420 -15.37644 -15.13856 -14.85714 -14.70673 -14.17446 -14.06362 -13.79272 -13.52577 -13.25010 -13.18909 -13.04274 -12.99733 -12.65872 -12.55823 -12.36591 -12.08229 -11.97815 -11.81497 -11.56490 -11.37052 -11.33759 -10.57612 -10.49247 -10.17394 -9.09972 -8.72485 -7.89909 -5.33950 0.10617 0.41999 1.45873 1.48993 1.58505 1.95009 2.50524 2.87891 3.17126 3.26550 3.40116 3.62962 3.77516 3.81723 3.97399 4.17854 4.29130 4.40888 4.42419 4.56346 4.62078 4.74126 4.74796 4.76612 4.79424 4.80707 4.90424 4.99060 5.02632 5.03698 5.12273 5.20605 5.29252 5.45935 5.49506 5.63468 5.69697 5.82783 6.30459 6.37968 6.61650 7.13436 7.35663 7.83669 8.34360 9.17107 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.036728 B = 0.003681 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.169100 B = 7604.442295 C = 7938.093401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.194 3.806 3 C -0.311 4.311 4 C 0.433 3.567 5 N -0.698 5.698 6 C 0.171 3.829 7 C -0.131 4.131 8 C 0.181 3.819 9 N -0.610 5.610 10 C -0.263 4.263 11 H 0.066 0.934 12 C -0.047 4.047 13 N -0.932 5.932 14 Si 0.964 3.036 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.293 1.293 18 C 0.145 3.855 19 C -0.129 4.129 20 N -0.605 5.605 21 C 0.343 3.657 22 C -0.078 4.078 23 N -0.581 5.581 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.407 0.593 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.005 0.995 34 H 0.251 0.749 35 H 0.023 0.977 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -18.290 0.860 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.053 3.947 3 C -0.339 4.339 4 C 0.190 3.810 5 N -0.328 5.328 6 C 0.066 3.934 7 C -0.171 4.171 8 C 0.054 3.946 9 N -0.334 5.334 10 C -0.393 4.393 11 H 0.084 0.916 12 C -0.243 4.243 13 N -0.578 5.578 14 Si 0.792 3.208 15 H -0.193 1.193 16 H -0.217 1.217 17 H -0.220 1.220 18 C 0.019 3.981 19 C -0.170 4.170 20 N -0.332 5.332 21 C 0.074 3.926 22 C -0.136 4.136 23 N -0.303 5.303 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.166 0.834 28 H 0.243 0.757 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.665 -18.798 0.762 18.887 hybrid contribution 0.478 2.111 0.089 2.167 sum -1.187 -16.687 0.851 16.750 Atomic orbital electron populations 1.20830 0.85794 1.04731 1.04453 1.21923 0.98739 0.87232 0.86849 1.22163 0.93506 1.01524 1.16720 1.18787 0.89131 0.86666 0.86462 1.44799 1.08925 1.01772 1.77298 1.20868 0.95840 0.80083 0.96580 1.22271 0.98717 0.95587 1.00520 1.20545 0.95716 0.92863 0.85439 1.44342 1.58216 1.15864 1.14934 1.19522 1.40864 0.87198 0.91728 0.91636 1.25731 1.01775 0.99761 0.97016 1.70158 1.48813 1.30154 1.08703 0.85266 0.77944 0.79359 0.78219 1.19266 1.21677 1.21989 1.20992 0.92353 0.88477 0.96280 1.22309 1.00874 0.97565 0.96231 1.67811 1.42003 0.97823 1.25561 1.23608 0.86967 0.94526 0.87454 1.20622 0.99896 0.88440 1.04644 1.68188 1.09413 1.30344 1.22358 0.88699 0.89501 0.88942 0.83425 0.75669 0.90292 0.92087 0.90873 0.92181 0.97718 0.94031 0.95866 0.92490 0.91011 0.92581 0.88585 0.89277 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 10.21 71.23 0.73 -0.99 16 2 C 0.19 4.88 6.81 42.42 0.29 5.17 16 3 C -0.31 -8.41 8.60 22.58 0.19 -8.21 16 4 C 0.43 12.70 7.69 133.16 1.02 13.72 16 5 N -0.70 -19.54 5.23 -323.94 -1.69 -21.23 16 6 C 0.17 5.20 2.12 45.01 0.10 5.29 16 7 C -0.13 -4.53 5.55 30.67 0.17 -4.36 16 8 C 0.18 8.20 5.31 86.36 0.46 8.66 16 9 N -0.61 -29.18 2.99 -699.08 -2.09 -31.27 16 10 C -0.26 -14.03 9.59 84.03 0.81 -13.22 16 11 H 0.07 3.44 7.89 -2.91 -0.02 3.41 16 12 C -0.05 -2.56 4.91 84.86 0.42 -2.15 16 13 N -0.93 -53.49 11.19 21.65 0.24 -53.25 16 14 Si 0.96 43.88 29.59 68.60 2.03 45.91 16 15 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 18 C 0.15 5.63 6.51 86.36 0.56 6.19 16 19 C -0.13 -4.12 5.62 30.67 0.17 -3.95 16 20 N -0.61 -17.81 10.37 -185.45 -1.92 -19.73 16 21 C 0.34 9.12 7.64 138.76 1.06 10.18 16 22 C -0.08 -1.37 10.32 71.23 0.73 -0.63 16 23 N -0.58 -15.66 10.27 -176.29 -1.81 -17.47 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.33 8.09 -2.38 -0.02 1.31 16 27 H 0.15 3.72 6.34 -2.91 -0.02 3.70 16 28 H 0.41 10.82 8.73 -92.71 -0.81 10.01 16 29 H 0.08 2.42 6.51 -2.39 -0.02 2.41 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 3.13 6.04 -2.39 -0.01 3.12 16 33 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 37 H 0.07 2.05 7.79 -2.38 -0.02 2.03 16 38 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.56 330.88 1.68 -61.88 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.22 Total: 19.48 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.71 Total: 15.70 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -7.28 Total: -142.96 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -63.56 1.68 -61.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110825024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.332 kcal (2) G-P(sol) polarization free energy of solvation -63.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds