Wall clock time and date at job start Mon Mar 30 2020 02:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46758 * 2 1 4 4 N 1.46496 * 109.47448 * 119.99688 * 2 1 3 5 5 C 1.36885 * 126.39924 * 299.98078 * 4 2 1 6 6 C 1.34666 * 106.81450 * 180.24042 * 5 4 2 7 7 N 1.34123 * 108.02298 * 359.60606 * 6 5 4 8 8 C 1.30501 * 109.25747 * 0.40559 * 7 6 5 9 9 C 1.50697 * 125.65036 * 179.77644 * 8 7 6 10 10 N 1.46903 * 109.46802 * 269.96853 * 9 8 7 11 11 C 1.46901 * 110.99941 * 190.00123 * 10 9 8 12 12 C 1.50700 * 109.47324 * 169.00231 * 11 10 9 13 13 H 1.08008 * 119.99733 * 354.96013 * 12 11 10 14 14 C 1.37875 * 120.00393 * 174.95798 * 12 11 10 15 15 N 1.31513 * 119.99876 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00016 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46692 * 90.00308 * 16 14 12 18 18 H 1.48495 * 109.46822 * 209.99787 * 16 14 12 19 19 H 1.48492 * 109.47120 * 330.00553 * 16 14 12 20 20 C 1.46905 * 110.99777 * 66.05158 * 10 9 8 21 21 C 1.53002 * 109.47462 * 62.03618 * 20 10 9 22 22 C 1.47201 * 109.46905 * 179.60675 * 21 20 10 23 23 N 7.86268 * 141.01478 * 147.83226 * 2 1 3 24 24 H 1.08992 * 109.46810 * 299.99897 * 1 2 3 25 25 H 1.08997 * 109.47224 * 60.00055 * 1 2 3 26 26 H 1.08997 * 109.46437 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47376 * 240.00378 * 2 1 3 28 28 H 1.09002 * 109.46844 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46695 * 300.00186 * 3 2 1 30 30 H 1.09000 * 109.46868 * 60.00067 * 3 2 1 31 31 H 1.07997 * 126.59063 * 359.97288 * 5 4 2 32 32 H 1.08001 * 125.98710 * 179.76490 * 6 5 4 33 33 H 1.08997 * 109.47551 * 29.97006 * 9 8 7 34 34 H 1.09003 * 109.47144 * 149.97341 * 9 8 7 35 35 H 1.09005 * 109.46988 * 288.99837 * 11 10 9 36 36 H 1.09000 * 109.47215 * 48.99833 * 11 10 9 37 37 H 0.97001 * 119.99953 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.46925 * 182.03822 * 20 10 9 39 39 H 1.09004 * 109.46640 * 302.03115 * 20 10 9 40 40 H 1.08994 * 109.46824 * 299.60856 * 21 20 10 41 41 H 1.08998 * 109.46831 * 59.60622 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6905 1.1961 5 6 1.7702 -0.3386 2.4955 6 6 2.4103 -1.2345 3.2708 7 7 3.0252 -2.1146 2.4669 8 6 2.7977 -1.7931 1.2228 9 6 3.3177 -2.5306 0.0158 10 7 4.6178 -1.9708 -0.3772 11 6 5.0454 -2.4974 -1.6803 12 6 6.2320 -1.7111 -2.1751 13 1 6.5783 -0.8506 -1.6217 14 6 6.8755 -2.0901 -3.3340 15 7 6.4535 -3.1375 -4.0080 16 14 8.3458 -1.1149 -3.9476 17 1 9.5909 -1.6784 -3.3665 18 1 8.4102 -1.1959 -5.4290 19 1 8.2054 0.3047 -3.5350 20 6 5.6339 -2.2259 0.6527 21 6 5.8262 -3.7349 0.8169 22 6 6.8510 -3.9901 1.8422 23 7 7.6418 -4.1872 2.6336 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.1787 0.4992 2.8338 32 1 2.4237 -1.2443 4.3507 33 1 3.4352 -3.5868 0.2580 34 1 2.6119 -2.4229 -0.8078 35 1 5.3230 -3.5462 -1.5749 36 1 4.2269 -2.4082 -2.3945 37 1 6.9060 -3.4040 -4.8236 38 1 6.5774 -1.7698 0.3530 39 1 5.3071 -1.7960 1.5996 40 1 4.8843 -4.1899 1.1233 41 1 6.1461 -4.1657 -0.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132895207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:34 Heat of formation + Delta-G solvation = 71.928374 kcal Electronic energy + Delta-G solvation = -21754.958731 eV Core-core repulsion = 18670.470851 eV Total energy + Delta-G solvation = -3084.487880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.97033 -39.21370 -37.32297 -36.80896 -34.69709 -32.28924 -31.51358 -31.13137 -28.67617 -28.12969 -26.63295 -25.23280 -23.65671 -22.06025 -21.52819 -19.97866 -18.83286 -18.25168 -17.80849 -17.03559 -16.43243 -16.02951 -15.84524 -15.39092 -15.19427 -15.09752 -14.67411 -14.60945 -14.37546 -13.87700 -13.82064 -13.53278 -13.42881 -13.09173 -13.04376 -12.93821 -12.91890 -12.68030 -12.56368 -12.40492 -12.27998 -11.96799 -11.84808 -11.51431 -11.25920 -10.76538 -10.52241 -10.37362 -9.23484 -8.94338 -8.12326 -6.18369 1.24776 1.44104 1.47229 1.55440 1.76182 1.81021 2.01601 2.28022 2.46878 3.03533 3.22398 3.44954 3.73795 3.74812 3.94690 4.06612 4.19638 4.23243 4.25814 4.46172 4.49398 4.62353 4.69927 4.71618 4.80032 4.87286 4.88804 4.97390 5.02126 5.18841 5.19288 5.31373 5.37401 5.41852 5.61593 5.74533 6.01723 6.12668 6.26209 6.43010 6.58667 6.63403 6.96724 7.33377 7.50245 8.97015 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.006143 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.841375 B = 4557.080070 C = 5971.782394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.120 3.880 3 C -0.152 4.152 4 N -0.437 5.437 5 C -0.046 4.046 6 C -0.058 4.058 7 N -0.519 5.519 8 C 0.207 3.793 9 C 0.129 3.871 10 N -0.525 5.525 11 C 0.201 3.799 12 C -0.514 4.514 13 H 0.056 0.944 14 C 0.015 3.985 15 N -0.926 5.926 16 Si 0.947 3.053 17 H -0.282 1.282 18 H -0.285 1.285 19 H -0.269 1.269 20 C 0.084 3.916 21 C -0.056 4.056 22 C 0.247 3.753 23 N -0.495 5.495 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.199 0.801 32 H 0.179 0.821 33 H 0.069 0.931 34 H 0.092 0.908 35 H -0.001 1.001 36 H 0.016 0.984 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.686 7.103 7.053 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 C -0.210 4.210 4 N -0.119 5.119 5 C -0.180 4.180 6 C -0.206 4.206 7 N -0.239 5.239 8 C -0.056 4.056 9 C 0.000 4.000 10 N -0.248 5.248 11 C 0.076 3.924 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.184 4.184 15 N -0.566 5.566 16 Si 0.774 3.226 17 H -0.208 1.208 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.046 4.046 21 C -0.098 4.098 22 C -0.070 4.070 23 N -0.173 5.173 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.216 0.784 32 H 0.196 0.804 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.017 0.983 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.138 6.649 8.121 16.816 hybrid contribution 0.395 0.126 -0.966 1.051 sum -12.744 6.775 7.155 16.109 Atomic orbital electron populations 1.22113 0.91462 1.02939 1.04409 1.21665 0.96416 0.94428 0.85749 1.22065 1.01099 0.93745 1.04061 1.45685 1.37206 1.21602 1.07414 1.22962 1.07855 1.04514 0.82678 1.22593 1.02289 0.95413 1.00317 1.70175 1.24378 1.29084 1.00313 1.23028 0.97685 0.90312 0.94541 1.20431 0.92065 0.95911 0.91582 1.62263 1.00983 1.58449 1.03151 1.19553 0.94754 0.93525 0.84584 1.21380 1.13357 1.12724 1.07766 0.92532 1.25579 0.99733 0.96023 0.97092 1.70017 1.42250 1.26833 1.17518 0.85713 0.80093 0.79475 0.77323 1.20790 1.21023 1.19375 1.21828 0.96393 0.91029 0.95336 1.20074 0.94280 1.01619 0.93787 1.29342 0.93181 0.91441 0.93039 1.81114 1.12483 1.10908 1.12843 0.90887 0.88828 0.92596 0.88780 0.93881 0.89050 0.90903 0.78386 0.80392 0.91339 0.88976 0.98337 0.96570 0.92875 0.91538 0.90915 0.85907 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.25 71.98 0.67 -1.42 16 2 C 0.12 2.37 3.52 45.00 0.16 2.53 16 3 C -0.15 -2.76 9.25 71.98 0.67 -2.09 16 4 N -0.44 -10.68 2.61 -491.90 -1.28 -11.96 16 5 C -0.05 -1.00 10.60 83.09 0.88 -0.12 16 6 C -0.06 -1.51 11.87 83.52 0.99 -0.52 16 7 N -0.52 -16.36 10.45 -188.14 -1.97 -18.33 16 8 C 0.21 6.17 6.54 138.13 0.90 7.07 16 9 C 0.13 3.97 4.90 85.56 0.42 4.39 16 10 N -0.53 -19.27 4.69 -905.33 -4.24 -23.51 16 11 C 0.20 8.94 4.53 85.56 0.39 9.33 16 12 C -0.51 -26.03 8.40 25.60 0.21 -25.82 16 13 H 0.06 2.91 7.38 -2.91 -0.02 2.88 16 14 C 0.01 0.76 5.46 84.65 0.46 1.22 16 15 N -0.93 -50.94 13.29 21.45 0.28 -50.65 16 16 Si 0.95 42.24 29.54 68.60 2.03 44.26 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 20 C 0.08 3.03 4.94 86.30 0.43 3.46 16 21 C -0.06 -1.82 5.05 28.79 0.15 -1.68 16 22 C 0.25 8.78 15.43 89.44 1.38 10.16 16 23 N -0.49 -19.48 18.54 20.01 0.37 -19.11 16 24 H 0.07 0.85 7.95 -2.39 -0.02 0.83 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.09 2.16 6.67 -2.39 -0.02 2.15 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.32 8.14 -2.38 -0.02 1.31 16 30 H 0.07 1.09 7.95 -2.39 -0.02 1.07 16 31 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.07 2.02 6.07 -2.39 -0.01 2.00 16 34 H 0.09 2.63 6.86 -2.39 -0.02 2.62 16 35 H 0.00 -0.05 6.01 -2.38 -0.01 -0.06 16 36 H 0.02 0.76 7.91 -2.39 -0.02 0.75 16 37 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.07 2.66 6.98 -2.39 -0.02 2.65 16 39 H 0.07 2.63 6.61 -2.39 -0.02 2.61 16 40 H 0.12 3.55 6.34 -2.39 -0.02 3.53 16 41 H 0.11 3.87 6.28 -2.39 -0.01 3.86 16 Total: -1.00 -62.77 340.16 3.92 -58.86 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.02 Total: 13.91 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 7.70 Total: 6.52 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.83 Total: -123.55 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -62.77 3.92 -58.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132895207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.785 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds