Wall clock time and date at job start Mon Mar 30 2020 01:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35740 * 116.99642 * 2 1 4 4 C 1.39286 * 120.84709 * 0.02562 * 3 2 1 5 5 C 1.37955 * 119.08924 * 179.97438 * 4 3 2 6 6 N 1.31971 * 120.82515 * 359.74341 * 5 4 3 7 7 C 1.31946 * 121.86356 * 0.52766 * 6 5 4 8 8 C 1.50700 * 119.58768 * 179.75121 * 7 6 5 9 9 N 1.46500 * 109.47052 * 274.72268 * 8 7 6 10 10 C 1.36932 * 120.00288 * 269.99625 * 9 8 7 11 11 H 1.08000 * 120.00011 * 141.41672 * 10 9 8 12 12 C 1.38809 * 120.00305 * 321.42562 * 10 9 8 13 13 N 1.31623 * 120.00084 * 339.42129 * 12 10 9 14 14 Si 1.86802 * 120.00425 * 159.42288 * 12 10 9 15 15 H 1.48503 * 109.47026 * 89.99485 * 14 12 10 16 16 H 1.48491 * 109.47434 * 209.99716 * 14 12 10 17 17 H 1.48500 * 109.46940 * 329.99885 * 14 12 10 18 18 C 1.46499 * 119.99999 * 90.00618 * 9 8 7 19 19 C 1.55240 * 110.46783 * 240.04338 * 18 9 8 20 20 C 1.54891 * 102.58834 * 203.39057 * 19 18 9 21 21 C 1.54265 * 104.30992 * 37.92817 * 20 19 18 22 22 C 1.53874 * 106.60152 * 336.32513 * 21 20 19 23 23 C 1.37986 * 120.82251 * 359.47425 * 7 6 5 24 24 H 1.09003 * 109.47362 * 60.00141 * 1 2 3 25 25 H 1.09005 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47601 * 299.99511 * 1 2 3 27 27 H 1.07999 * 120.45347 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.58306 * 179.97438 * 5 4 3 29 29 H 1.09006 * 109.46962 * 154.72428 * 8 7 6 30 30 H 1.09001 * 109.47595 * 34.72425 * 8 7 6 31 31 H 0.96998 * 120.00128 * 180.02562 * 13 12 10 32 32 H 1.09003 * 110.43209 * 2.68698 * 18 9 8 33 33 H 1.09001 * 110.90081 * 85.09618 * 19 18 9 34 34 H 1.09001 * 110.76022 * 321.62225 * 19 18 9 35 35 H 1.08998 * 110.48410 * 279.18527 * 20 19 18 36 36 H 1.08993 * 110.48287 * 156.67151 * 20 19 18 37 37 H 1.09003 * 110.03173 * 95.61391 * 21 20 19 38 38 H 1.09001 * 110.03017 * 216.98738 * 21 20 19 39 39 H 1.08995 * 110.03280 * 119.28781 * 22 21 20 40 40 H 1.09005 * 110.02712 * 240.66494 * 22 21 20 41 41 H 1.08007 * 120.45655 * 180.28242 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 1.3038 2.3887 0.0005 5 6 1.9674 3.5981 0.0011 6 7 3.2863 3.6458 0.0061 7 6 4.0229 2.5511 0.0006 8 6 5.5255 2.6654 0.0011 9 7 6.0038 2.8228 -1.3747 10 6 6.3170 1.7184 -2.1213 11 1 6.0700 1.6893 -3.1722 12 6 6.9518 0.6363 -1.5273 13 7 7.6090 0.7973 -0.3984 14 14 6.8734 -1.0486 -2.3302 15 1 8.0183 -1.2062 -3.2629 16 1 6.9396 -2.0994 -1.2832 17 1 5.6001 -1.1793 -3.0831 18 6 6.1472 4.1617 -1.9517 19 6 5.2458 4.3114 -3.2067 20 6 5.9444 5.4503 -3.9902 21 6 7.4503 5.1880 -3.7825 22 6 7.5792 4.3687 -2.4864 23 6 3.4345 1.3030 0.0000 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2243 2.3566 0.0005 28 1 1.4005 4.5174 0.0011 29 1 5.9583 1.7641 0.4353 30 1 5.8239 3.5322 0.5909 31 1 8.0529 0.0412 0.0165 32 1 5.9026 4.9233 -1.2112 33 1 4.2330 4.6004 -2.9258 34 1 5.2382 3.3900 -3.7890 35 1 5.6662 6.4214 -3.5806 36 1 5.6902 5.3967 -5.0487 37 1 7.8501 4.6217 -4.6236 38 1 7.9836 6.1334 -3.6822 39 1 8.0416 3.4048 -2.6984 40 1 8.1757 4.9162 -1.7565 41 1 4.0431 0.4108 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151127073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:45 Heat of formation + Delta-G solvation = 8.353186 kcal Electronic energy + Delta-G solvation = -22090.497905 eV Core-core repulsion = 18970.960447 eV Total energy + Delta-G solvation = -3119.537458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.07602 -38.04676 -37.37650 -34.43977 -31.56178 -30.99082 -30.41596 -27.77116 -27.66698 -26.60090 -25.71292 -22.87079 -22.78819 -20.77050 -19.74800 -19.06538 -17.64413 -16.55900 -16.09305 -15.63496 -15.34645 -15.12804 -14.79857 -14.29970 -14.18508 -13.64434 -13.54122 -12.99960 -12.73153 -12.65871 -12.46649 -11.99473 -11.39943 -11.30792 -11.08960 -11.06266 -10.81965 -10.50791 -10.50187 -10.34237 -10.20941 -10.07455 -9.95558 -9.66913 -9.39619 -8.86809 -8.48237 -8.45318 -8.32454 -6.55595 -5.83358 -3.39399 1.72355 1.93211 3.34240 3.40511 3.43036 3.47550 4.36053 4.51359 4.95260 5.02685 5.14324 5.25140 5.28405 5.34101 5.41149 5.45552 5.50247 5.56127 5.79981 5.84647 6.06967 6.26391 6.29798 6.31657 6.34867 6.41209 6.47346 6.58732 6.63106 6.67433 6.70937 6.89281 6.94570 7.11069 7.17246 7.25888 7.45179 7.52533 7.61553 7.84187 8.51003 8.77026 9.16124 9.78377 10.38298 11.16849 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.007560 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.847265 B = 3702.802723 C = 5043.588826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.156 3.844 4 C -0.286 4.286 5 C 0.126 3.874 6 N -0.504 5.504 7 C 0.170 3.830 8 C 0.187 3.813 9 N -0.561 5.561 10 C -0.251 4.251 11 H 0.061 0.939 12 C 0.017 3.983 13 N -0.882 5.882 14 Si 0.889 3.111 15 H -0.285 1.285 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.177 3.823 19 C -0.133 4.133 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.184 4.184 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.145 0.855 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.256 0.744 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 3.598 0.059 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.103 3.897 4 C -0.307 4.307 5 C -0.033 4.033 6 N -0.217 5.217 7 C 0.032 3.968 8 C 0.060 3.940 9 N -0.278 5.278 10 C -0.381 4.381 11 H 0.078 0.922 12 C -0.184 4.184 13 N -0.524 5.524 14 Si 0.718 3.282 15 H -0.212 1.212 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.070 3.930 19 C -0.172 4.172 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.171 4.171 23 C -0.206 4.206 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.162 0.838 29 H 0.127 0.873 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.545 4.042 0.178 10.367 hybrid contribution -0.986 -1.711 -0.540 2.047 sum -10.531 2.331 -0.363 10.792 Atomic orbital electron populations 1.23003 0.78884 1.03541 1.01187 1.86071 1.21023 1.27169 1.88437 1.19424 0.92664 0.83979 0.93640 1.21939 1.00382 0.93626 1.14792 1.22426 0.90965 0.96150 0.93744 1.67689 1.06010 1.32803 1.15194 1.22926 0.99995 0.86271 0.87634 1.20073 0.82701 1.03284 0.87972 1.43706 1.71958 1.00856 1.11303 1.18896 1.31845 0.93440 0.93883 0.92189 1.25170 0.96061 0.99483 0.97680 1.69974 1.32346 1.30174 1.19874 0.86516 0.78224 0.84558 0.78895 1.21186 1.21341 1.20240 1.21303 0.91778 0.87116 0.92798 1.22912 0.98218 0.97497 0.98600 1.22271 0.95989 0.98683 0.99066 1.22064 0.95869 0.98962 0.98857 1.22502 0.99282 1.00473 0.94841 1.21442 0.90937 1.00736 1.07438 0.92796 0.88528 0.92838 0.85691 0.83801 0.87302 0.93481 0.93366 0.92469 0.93217 0.91429 0.92712 0.93151 0.92842 0.93368 0.89795 0.93675 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.84 101.05 0.99 1.31 16 2 O -0.32 -5.23 10.51 -18.93 -0.20 -5.43 16 3 C 0.16 2.83 6.74 -38.82 -0.26 2.57 16 4 C -0.29 -4.50 9.11 -39.30 -0.36 -4.86 16 5 C 0.13 2.09 11.17 -17.60 -0.20 1.89 16 6 N -0.50 -10.03 10.27 -9.55 -0.10 -10.13 16 7 C 0.17 3.66 6.36 -82.64 -0.53 3.13 16 8 C 0.19 4.36 5.58 -5.19 -0.03 4.33 16 9 N -0.56 -13.44 2.44 -164.93 -0.40 -13.85 16 10 C -0.25 -6.51 7.73 -15.06 -0.12 -6.63 16 11 H 0.06 1.60 6.72 -52.49 -0.35 1.25 16 12 C 0.02 0.44 4.97 -17.43 -0.09 0.36 16 13 N -0.88 -24.01 11.49 55.49 0.64 -23.37 16 14 Si 0.89 21.07 29.60 -169.99 -5.03 16.04 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.18 3.78 3.40 -66.09 -0.22 3.56 16 19 C -0.13 -2.61 6.47 -24.55 -0.16 -2.77 16 20 C -0.12 -2.02 6.82 -25.07 -0.17 -2.19 16 21 C -0.12 -2.03 6.80 -25.61 -0.17 -2.20 16 22 C -0.13 -2.68 6.41 -25.62 -0.16 -2.84 16 23 C -0.18 -3.85 9.68 -39.30 -0.38 -4.23 16 24 H 0.05 0.54 7.71 -51.93 -0.40 0.14 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.51 7.71 -51.93 -0.40 0.11 16 27 H 0.13 1.54 6.47 -52.49 -0.34 1.20 16 28 H 0.14 1.89 8.06 -52.48 -0.42 1.46 16 29 H 0.11 2.77 5.46 -51.93 -0.28 2.49 16 30 H 0.05 1.07 7.92 -51.93 -0.41 0.66 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.96 6.92 -51.93 -0.36 1.61 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.14 3.02 8.06 -52.48 -0.42 2.60 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -28.32 331.50 -8.19 -36.51 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.24 Total: 3.81 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.85 Total: -8.58 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.14 Total: -47.34 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.20 Total: -5.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.32 -8.19 -36.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151127073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.865 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds