Wall clock time and date at job start Mon Mar 30 2020 01:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35740 * 116.99642 * 2 1 4 4 C 1.39286 * 120.84709 * 0.02562 * 3 2 1 5 5 C 1.37955 * 119.08924 * 179.97438 * 4 3 2 6 6 N 1.31971 * 120.82515 * 359.74341 * 5 4 3 7 7 C 1.31946 * 121.86356 * 0.52766 * 6 5 4 8 8 C 1.50700 * 119.58768 * 179.75121 * 7 6 5 9 9 N 1.46500 * 109.47052 * 274.72268 * 8 7 6 10 10 C 1.36932 * 120.00288 * 269.99625 * 9 8 7 11 11 H 1.08000 * 120.00011 * 141.41672 * 10 9 8 12 12 C 1.38809 * 120.00305 * 321.42562 * 10 9 8 13 13 N 1.31623 * 120.00084 * 339.42129 * 12 10 9 14 14 Si 1.86802 * 120.00425 * 159.42288 * 12 10 9 15 15 H 1.48503 * 109.47026 * 89.99485 * 14 12 10 16 16 H 1.48491 * 109.47434 * 209.99716 * 14 12 10 17 17 H 1.48500 * 109.46940 * 329.99885 * 14 12 10 18 18 C 1.46499 * 119.99999 * 90.00618 * 9 8 7 19 19 C 1.55240 * 110.46783 * 240.04338 * 18 9 8 20 20 C 1.54891 * 102.58834 * 203.39057 * 19 18 9 21 21 C 1.54265 * 104.30992 * 37.92817 * 20 19 18 22 22 C 1.53874 * 106.60152 * 336.32513 * 21 20 19 23 23 C 1.37986 * 120.82251 * 359.47425 * 7 6 5 24 24 H 1.09003 * 109.47362 * 60.00141 * 1 2 3 25 25 H 1.09005 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47601 * 299.99511 * 1 2 3 27 27 H 1.07999 * 120.45347 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.58306 * 179.97438 * 5 4 3 29 29 H 1.09006 * 109.46962 * 154.72428 * 8 7 6 30 30 H 1.09001 * 109.47595 * 34.72425 * 8 7 6 31 31 H 0.96998 * 120.00128 * 180.02562 * 13 12 10 32 32 H 1.09003 * 110.43209 * 2.68698 * 18 9 8 33 33 H 1.09001 * 110.90081 * 85.09618 * 19 18 9 34 34 H 1.09001 * 110.76022 * 321.62225 * 19 18 9 35 35 H 1.08998 * 110.48410 * 279.18527 * 20 19 18 36 36 H 1.08993 * 110.48287 * 156.67151 * 20 19 18 37 37 H 1.09003 * 110.03173 * 95.61391 * 21 20 19 38 38 H 1.09001 * 110.03017 * 216.98738 * 21 20 19 39 39 H 1.08995 * 110.03280 * 119.28781 * 22 21 20 40 40 H 1.09005 * 110.02712 * 240.66494 * 22 21 20 41 41 H 1.08007 * 120.45655 * 180.28242 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 1.3038 2.3887 0.0005 5 6 1.9674 3.5981 0.0011 6 7 3.2863 3.6458 0.0061 7 6 4.0229 2.5511 0.0006 8 6 5.5255 2.6654 0.0011 9 7 6.0038 2.8228 -1.3747 10 6 6.3170 1.7184 -2.1213 11 1 6.0700 1.6893 -3.1722 12 6 6.9518 0.6363 -1.5273 13 7 7.6090 0.7973 -0.3984 14 14 6.8734 -1.0486 -2.3302 15 1 8.0183 -1.2062 -3.2629 16 1 6.9396 -2.0994 -1.2832 17 1 5.6001 -1.1793 -3.0831 18 6 6.1472 4.1617 -1.9517 19 6 5.2458 4.3114 -3.2067 20 6 5.9444 5.4503 -3.9902 21 6 7.4503 5.1880 -3.7825 22 6 7.5792 4.3687 -2.4864 23 6 3.4345 1.3030 0.0000 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2243 2.3566 0.0005 28 1 1.4005 4.5174 0.0011 29 1 5.9583 1.7641 0.4353 30 1 5.8239 3.5322 0.5909 31 1 8.0529 0.0412 0.0165 32 1 5.9026 4.9233 -1.2112 33 1 4.2330 4.6004 -2.9258 34 1 5.2382 3.3900 -3.7890 35 1 5.6662 6.4214 -3.5806 36 1 5.6902 5.3967 -5.0487 37 1 7.8501 4.6217 -4.6236 38 1 7.9836 6.1334 -3.6822 39 1 8.0416 3.4048 -2.6984 40 1 8.1757 4.9162 -1.7565 41 1 4.0431 0.4108 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151127073.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:44 Heat of formation + Delta-G solvation = -7.416386 kcal Electronic energy + Delta-G solvation = -22091.181725 eV Core-core repulsion = 18970.960447 eV Total energy + Delta-G solvation = -3120.221278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45868 -39.50684 -38.87558 -36.17195 -33.37889 -32.41569 -32.00868 -29.32280 -28.88990 -28.07817 -27.47433 -24.52262 -24.26331 -22.29303 -21.27921 -20.73582 -19.01775 -18.15476 -17.70278 -17.06049 -16.77151 -16.55610 -16.49428 -15.96333 -15.59500 -15.22303 -14.97436 -14.50290 -14.34925 -14.09972 -14.02348 -13.27717 -13.18352 -12.91008 -12.72396 -12.53998 -12.41673 -12.23352 -12.00401 -11.89243 -11.84259 -11.75591 -11.74242 -11.20401 -11.07788 -10.51093 -10.32269 -9.86945 -9.76539 -8.49790 -7.82392 -5.42676 0.28457 0.49957 1.41165 1.45560 1.53354 2.24572 2.49101 2.92893 3.25646 3.63802 3.74876 3.83132 4.02922 4.04868 4.07572 4.31961 4.32743 4.36696 4.39727 4.50135 4.67673 4.70933 4.76616 4.79005 4.93555 4.95255 4.99129 5.01223 5.12299 5.20618 5.23201 5.28012 5.34086 5.51672 5.56447 5.66303 5.69729 5.78436 5.82700 6.33451 6.51023 7.18175 7.29065 7.86638 8.42283 9.14336 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.007560 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.847265 B = 3702.802723 C = 5043.588826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.157 3.843 4 C -0.267 4.267 5 C 0.126 3.874 6 N -0.522 5.522 7 C 0.158 3.842 8 C 0.193 3.807 9 N -0.573 5.573 10 C -0.247 4.247 11 H 0.049 0.951 12 C -0.023 4.023 13 N -0.909 5.909 14 Si 0.939 3.061 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.170 3.830 19 C -0.125 4.125 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.215 4.215 24 H 0.068 0.932 25 H 0.120 0.880 26 H 0.073 0.927 27 H 0.171 0.829 28 H 0.188 0.812 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 5.055 -0.822 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.104 3.896 4 C -0.288 4.288 5 C -0.031 4.031 6 N -0.236 5.236 7 C 0.021 3.979 8 C 0.066 3.934 9 N -0.291 5.291 10 C -0.378 4.378 11 H 0.066 0.934 12 C -0.221 4.221 13 N -0.552 5.552 14 Si 0.768 3.232 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.205 1.205 18 C 0.064 3.936 19 C -0.164 4.164 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.168 4.168 23 C -0.237 4.237 24 H 0.087 0.913 25 H 0.138 0.862 26 H 0.092 0.908 27 H 0.188 0.812 28 H 0.205 0.795 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.376 5.504 -0.711 13.564 hybrid contribution -0.301 -2.149 -0.205 2.179 sum -12.678 3.355 -0.916 13.146 Atomic orbital electron populations 1.23436 0.75676 1.05834 1.02789 1.86053 1.24297 1.26568 1.88027 1.19441 0.91815 0.85645 0.92745 1.22350 1.02443 0.91994 1.12032 1.23163 0.89874 0.98331 0.91782 1.67633 1.07867 1.31971 1.16165 1.22349 0.98933 0.87166 0.89489 1.19769 0.84617 1.01465 0.87539 1.43814 1.72685 1.01402 1.11176 1.18895 1.30978 0.94319 0.93570 0.93365 1.25660 0.96319 1.01802 0.98324 1.70074 1.33654 1.30457 1.21056 0.85726 0.77877 0.81629 0.77978 1.20873 1.21535 1.20464 1.21468 0.92888 0.85827 0.93450 1.22759 0.98119 0.97802 0.97723 1.22235 0.94741 0.98072 0.99839 1.22018 0.96838 0.99515 0.96658 1.22412 0.98292 0.99215 0.96910 1.21273 0.92752 0.99549 1.10086 0.91349 0.86206 0.90838 0.81197 0.79499 0.90159 0.94110 0.93799 0.92534 0.93330 0.93920 0.90658 0.91180 0.92672 0.90689 0.93584 0.93602 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.84 113.37 1.12 1.42 16 2 O -0.34 -10.68 10.51 -90.65 -0.95 -11.63 16 3 C 0.16 5.54 6.74 22.77 0.15 5.69 16 4 C -0.27 -7.48 9.11 22.45 0.20 -7.27 16 5 C 0.13 3.79 11.17 84.60 0.95 4.74 16 6 N -0.52 -20.40 10.27 -184.13 -1.89 -22.29 16 7 C 0.16 7.00 6.36 42.48 0.27 7.27 16 8 C 0.19 9.53 5.58 85.63 0.48 10.00 16 9 N -0.57 -28.67 2.44 -675.71 -1.65 -30.31 16 10 C -0.25 -13.43 7.73 84.03 0.65 -12.78 16 11 H 0.05 2.70 6.72 -2.91 -0.02 2.68 16 12 C -0.02 -1.27 4.97 84.86 0.42 -0.85 16 13 N -0.91 -52.17 11.49 21.65 0.25 -51.92 16 14 Si 0.94 45.09 29.60 68.60 2.03 47.12 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 C 0.17 7.38 3.40 46.19 0.16 7.54 16 19 C -0.12 -4.83 6.47 32.01 0.21 -4.62 16 20 C -0.11 -3.37 6.82 31.67 0.22 -3.16 16 21 C -0.11 -3.61 6.80 31.32 0.21 -3.40 16 22 C -0.13 -5.31 6.41 31.32 0.20 -5.11 16 23 C -0.21 -9.32 9.68 22.45 0.22 -9.10 16 24 H 0.07 1.08 7.71 -2.39 -0.02 1.06 16 25 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.07 1.07 7.71 -2.39 -0.02 1.06 16 27 H 0.17 3.19 6.47 -2.91 -0.02 3.17 16 28 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 29 H 0.08 4.41 5.46 -2.38 -0.01 4.40 16 30 H 0.04 1.97 7.92 -2.39 -0.02 1.95 16 31 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.06 2.43 7.84 -2.39 -0.02 2.41 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.85 6.62 -2.39 -0.02 1.83 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.05 2.23 6.92 -2.39 -0.02 2.22 16 40 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -65.21 331.50 4.25 -60.97 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.01 Total: 17.71 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 5.45 Total: -9.63 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -3.29 Total: -104.53 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.95 Total: -11.63 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.21 4.25 -60.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151127073.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.549 kcal (2) G-P(sol) polarization free energy of solvation -65.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds