Wall clock time and date at job start Mon Mar 30 2020 02:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.36881 * 126.40136 * 89.99703 * 6 5 4 8 8 C 1.34671 * 106.82076 * 179.97438 * 7 6 5 9 9 N 1.34127 * 108.02129 * 0.02562 * 8 7 6 10 10 C 1.30511 * 109.25181 * 359.72172 * 9 8 7 11 11 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 12 12 C 1.53000 * 109.47251 * 293.95304 * 11 2 1 13 13 H 1.08996 * 109.47165 * 55.00265 * 12 11 2 14 14 C 1.47194 * 109.47399 * 295.00198 * 12 11 2 15 15 N 3.66499 * 112.02538 * 160.58821 * 2 1 3 16 16 C 1.52999 * 109.46992 * 175.00444 * 12 11 2 17 17 C 1.50701 * 109.47203 * 185.00144 * 16 12 11 18 18 H 1.08000 * 119.99881 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00236 * 179.97438 * 17 16 12 20 20 N 1.31518 * 119.99776 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46869 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46999 * 120.00106 * 21 19 17 24 24 H 1.48499 * 109.47133 * 240.00271 * 21 19 17 25 25 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 26 26 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 28 28 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 29 29 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 31 31 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 32 32 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 34 34 H 1.08002 * 126.58719 * 359.96564 * 7 6 5 35 35 H 1.07999 * 125.99048 * 180.02562 * 8 7 6 36 36 H 1.07995 * 125.64679 * 180.28977 * 10 9 8 37 37 H 1.08997 * 109.47144 * 53.95829 * 11 2 1 38 38 H 1.09002 * 109.46776 * 173.95798 * 11 2 1 39 39 H 1.09000 * 109.46998 * 304.99782 * 16 12 11 40 40 H 1.08998 * 109.47235 * 65.00061 * 16 12 11 41 41 H 0.97003 * 119.99680 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4860 1.3178 6 7 1.8313 4.1427 2.5803 7 6 2.5787 4.1463 3.7271 8 6 1.8924 4.8632 4.6373 9 7 0.7566 5.2854 4.0623 10 6 0.7158 4.8623 2.8284 11 6 1.9953 -0.7660 -1.1376 12 6 1.6313 -2.2427 -0.9702 13 1 0.5531 -2.3389 -0.8431 14 6 2.3154 -2.7855 0.2147 15 7 2.8435 -3.2044 1.1292 16 6 2.0698 -3.0200 -2.2130 17 6 1.6029 -4.4486 -2.1026 18 1 1.0485 -4.7699 -1.2332 19 6 1.8826 -5.3453 -3.1119 20 7 2.5574 -4.9539 -4.1708 21 14 1.3045 -7.1163 -2.9748 22 1 0.5727 -7.3003 -1.6959 23 1 0.4019 -7.4317 -4.1109 24 1 2.4790 -8.0244 -3.0087 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9273 -0.8309 29 1 3.0797 1.3443 -0.1084 30 1 2.0658 1.5016 2.1492 31 1 0.5472 2.0845 1.4264 32 1 3.2636 3.4594 1.2094 33 1 1.7446 4.0416 0.4870 34 1 3.5350 3.6663 3.8737 35 1 2.2022 5.0632 5.6524 36 1 -0.0794 5.0539 2.1232 37 1 1.5610 -0.3873 -2.0627 38 1 3.0796 -0.6612 -1.1756 39 1 1.6329 -2.5625 -3.1006 40 1 3.1568 -2.9980 -2.2905 41 1 2.7545 -5.5848 -4.8808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181066358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:52 Heat of formation + Delta-G solvation = 80.838626 kcal Electronic energy + Delta-G solvation = -20254.607360 eV Core-core repulsion = 17170.505857 eV Total energy + Delta-G solvation = -3084.101503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.22514 -38.48445 -36.24505 -34.98135 -33.63497 -32.09637 -30.73867 -29.60401 -27.44716 -26.83943 -24.89600 -22.60570 -21.70658 -21.54473 -21.06401 -20.96378 -17.69202 -16.78499 -16.58501 -15.96236 -15.70257 -15.10903 -14.75821 -14.53859 -14.45384 -14.03978 -14.00462 -13.42895 -13.26342 -12.92743 -12.61931 -12.51176 -12.30628 -11.99700 -11.87975 -11.68187 -11.48946 -11.23408 -11.09764 -10.97753 -10.72947 -10.55107 -10.22034 -10.18308 -9.86256 -9.58290 -9.25647 -8.74134 -8.50639 -8.34054 -6.14252 -4.17384 1.83668 2.51862 2.97820 3.25315 3.33805 3.38358 3.67002 3.77724 3.85889 4.25187 4.37545 4.49306 4.58500 4.66613 4.77243 4.86314 4.89054 5.05768 5.22528 5.23523 5.24216 5.34055 5.42773 5.46288 5.56164 5.65773 5.73399 5.82170 5.93942 6.01030 6.04582 6.30399 6.43439 6.51476 6.93473 7.03067 7.03821 7.36727 7.47072 7.81214 7.85770 8.18294 8.54170 8.87590 9.48472 10.96673 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.042894 B = 0.002666 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.616956 B =10501.271694 C =10674.102501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.132 4.132 5 C 0.105 3.895 6 N -0.456 5.456 7 C -0.053 4.053 8 C -0.034 4.034 9 N -0.499 5.499 10 C 0.179 3.821 11 C 0.063 3.937 12 C 0.010 3.990 13 H 0.101 0.899 14 C 0.256 3.744 15 N -0.479 5.479 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.202 0.798 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 19.301 6.857 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.171 4.171 5 C -0.018 4.018 6 N -0.138 5.138 7 C -0.187 4.187 8 C -0.182 4.182 9 N -0.217 5.217 10 C -0.103 4.103 11 C -0.066 4.066 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.061 4.061 15 N -0.156 5.156 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.190 0.810 35 H 0.185 0.815 36 H 0.219 0.781 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.679 18.782 8.754 20.789 hybrid contribution -0.099 -1.092 -1.555 1.903 sum -1.777 17.690 7.199 19.181 Atomic orbital electron populations 1.22516 0.87343 1.02947 1.00309 1.61973 1.08186 1.12492 1.44276 1.21970 1.00592 0.88942 0.95441 1.21976 1.02153 0.93295 0.99664 1.21921 1.02400 0.93981 0.83542 1.45612 1.17497 1.39197 1.11542 1.22783 1.00680 1.08024 0.87175 1.22305 0.92985 1.02559 1.00378 1.70289 1.21204 1.24335 1.05861 1.24989 0.91956 0.97707 0.95688 1.22254 1.00733 0.92406 0.91179 1.19257 0.99258 0.92443 0.90268 0.88167 1.28845 0.92754 0.91487 0.93041 1.80988 1.10652 1.10858 1.13103 1.19178 0.97724 0.94449 0.89400 1.21170 1.35955 0.94469 1.04785 0.92455 1.24958 0.94919 0.98885 0.95237 1.69947 1.39481 1.35220 1.08385 0.86533 0.78608 0.84800 0.78143 1.19663 1.20837 1.20927 0.95283 0.90516 0.91684 0.94383 0.90460 0.90225 0.90927 0.88838 0.88777 0.80981 0.81505 0.78113 0.92712 0.90226 0.94475 0.95563 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.13 60.07 0.55 0.73 16 2 N -0.55 -6.51 4.46 -242.93 -1.08 -7.60 16 3 C 0.06 0.52 4.96 -3.83 -0.02 0.50 16 4 C -0.13 -1.02 5.46 -26.73 -0.15 -1.17 16 5 C 0.10 0.62 6.15 -4.04 -0.02 0.60 16 6 N -0.46 -3.80 2.75 -118.58 -0.33 -4.13 16 7 C -0.05 -0.47 11.58 -16.56 -0.19 -0.67 16 8 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 9 N -0.50 -5.97 11.25 -14.66 -0.16 -6.13 16 10 C 0.18 1.67 12.56 -90.37 -1.14 0.53 16 11 C 0.06 0.86 4.32 -3.83 -0.02 0.84 16 12 C 0.01 0.17 2.14 -93.41 -0.20 -0.03 16 13 H 0.10 1.68 6.26 -51.93 -0.33 1.35 16 14 C 0.26 5.23 13.67 -20.76 -0.28 4.94 16 15 N -0.48 -10.72 18.54 42.16 0.78 -9.94 16 16 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 17 C -0.53 -13.76 8.60 -34.44 -0.30 -14.05 16 18 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 21 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.90 6.21 -51.93 -0.32 0.57 16 27 H 0.06 0.63 6.47 -51.93 -0.34 0.29 16 28 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 29 H 0.08 0.66 7.93 -51.93 -0.41 0.24 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.59 6.55 -51.93 -0.34 0.25 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 38 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -32.59 347.99 -8.36 -40.95 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.33 Total: -3.85 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.20 Total: -6.18 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.06 Total: -52.20 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.59 -8.36 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181066358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.787 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds