Wall clock time and date at job start Mon Mar 30 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.36881 * 126.40136 * 89.99703 * 6 5 4 8 8 C 1.34671 * 106.82076 * 179.97438 * 7 6 5 9 9 N 1.34127 * 108.02129 * 0.02562 * 8 7 6 10 10 C 1.30511 * 109.25181 * 359.72172 * 9 8 7 11 11 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 12 12 C 1.53000 * 109.47251 * 293.95304 * 11 2 1 13 13 H 1.08996 * 109.47165 * 55.00265 * 12 11 2 14 14 C 1.47194 * 109.47399 * 295.00198 * 12 11 2 15 15 N 3.66499 * 112.02538 * 160.58821 * 2 1 3 16 16 C 1.52999 * 109.46992 * 175.00444 * 12 11 2 17 17 C 1.50701 * 109.47203 * 185.00144 * 16 12 11 18 18 H 1.08000 * 119.99881 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00236 * 179.97438 * 17 16 12 20 20 N 1.31518 * 119.99776 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46869 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46999 * 120.00106 * 21 19 17 24 24 H 1.48499 * 109.47133 * 240.00271 * 21 19 17 25 25 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 26 26 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 28 28 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 29 29 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 30 30 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 31 31 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 32 32 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 33 33 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 34 34 H 1.08002 * 126.58719 * 359.96564 * 7 6 5 35 35 H 1.07999 * 125.99048 * 180.02562 * 8 7 6 36 36 H 1.07995 * 125.64679 * 180.28977 * 10 9 8 37 37 H 1.08997 * 109.47144 * 53.95829 * 11 2 1 38 38 H 1.09002 * 109.46776 * 173.95798 * 11 2 1 39 39 H 1.09000 * 109.46998 * 304.99782 * 16 12 11 40 40 H 1.08998 * 109.47235 * 65.00061 * 16 12 11 41 41 H 0.97003 * 119.99680 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4860 1.3178 6 7 1.8313 4.1427 2.5803 7 6 2.5787 4.1463 3.7271 8 6 1.8924 4.8632 4.6373 9 7 0.7566 5.2854 4.0623 10 6 0.7158 4.8623 2.8284 11 6 1.9953 -0.7660 -1.1376 12 6 1.6313 -2.2427 -0.9702 13 1 0.5531 -2.3389 -0.8431 14 6 2.3154 -2.7855 0.2147 15 7 2.8435 -3.2044 1.1292 16 6 2.0698 -3.0200 -2.2130 17 6 1.6029 -4.4486 -2.1026 18 1 1.0485 -4.7699 -1.2332 19 6 1.8826 -5.3453 -3.1119 20 7 2.5574 -4.9539 -4.1708 21 14 1.3045 -7.1163 -2.9748 22 1 0.5727 -7.3003 -1.6959 23 1 0.4019 -7.4317 -4.1109 24 1 2.4790 -8.0244 -3.0087 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.5611 1.9273 -0.8309 29 1 3.0797 1.3443 -0.1084 30 1 2.0658 1.5016 2.1492 31 1 0.5472 2.0845 1.4264 32 1 3.2636 3.4594 1.2094 33 1 1.7446 4.0416 0.4870 34 1 3.5350 3.6663 3.8737 35 1 2.2022 5.0632 5.6524 36 1 -0.0794 5.0539 2.1232 37 1 1.5610 -0.3873 -2.0627 38 1 3.0796 -0.6612 -1.1756 39 1 1.6329 -2.5625 -3.1006 40 1 3.1568 -2.9980 -2.2905 41 1 2.7545 -5.5848 -4.8808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181066358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:45 Heat of formation + Delta-G solvation = 62.336712 kcal Electronic energy + Delta-G solvation = -20255.409663 eV Core-core repulsion = 17170.505857 eV Total energy + Delta-G solvation = -3084.903806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 9.03 seconds Orbital eigenvalues (eV) -42.88133 -39.52484 -37.54992 -35.95351 -35.34833 -33.59970 -31.71686 -30.28407 -28.82048 -27.75807 -26.05859 -23.93632 -23.14387 -22.22490 -21.83920 -21.60917 -18.54408 -18.35309 -18.14226 -16.86420 -16.56310 -16.38155 -15.81569 -15.62747 -15.45723 -14.77187 -14.75389 -14.71664 -14.30591 -14.18219 -14.03352 -13.73095 -13.39439 -13.10236 -13.04713 -12.99895 -12.75421 -12.60006 -12.50310 -12.42619 -12.23018 -11.75029 -11.63253 -11.36576 -11.11714 -10.90994 -10.56026 -10.51762 -9.42338 -9.20097 -8.20565 -6.28286 1.18230 1.38136 1.41736 1.51643 1.94385 2.06789 2.13962 2.25489 2.40716 2.97699 3.15189 3.35333 3.77927 3.91611 3.97883 4.07433 4.15431 4.19429 4.33799 4.35329 4.50183 4.60612 4.63382 4.67965 4.75679 4.80161 4.81621 4.85739 5.00808 5.05705 5.15311 5.28649 5.40829 5.46600 5.61990 5.78811 5.85079 6.07353 6.20078 6.23183 6.35053 6.82903 6.93390 7.17507 7.40391 8.90415 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.042894 B = 0.002666 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.616956 B =10501.271694 C =10674.102501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.564 5.564 3 C 0.061 3.939 4 C -0.121 4.121 5 C 0.108 3.892 6 N -0.456 5.456 7 C -0.054 4.054 8 C -0.062 4.062 9 N -0.542 5.542 10 C 0.175 3.825 11 C 0.074 3.926 12 C 0.019 3.981 13 H 0.115 0.885 14 C 0.267 3.733 15 N -0.516 5.516 16 C 0.038 3.962 17 C -0.538 4.538 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.285 1.285 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.193 0.807 35 H 0.176 0.824 36 H 0.230 0.770 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.002 0.998 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 20.204 6.238 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.288 5.288 3 C -0.067 4.067 4 C -0.159 4.159 5 C -0.014 4.014 6 N -0.137 5.137 7 C -0.188 4.188 8 C -0.209 4.209 9 N -0.261 5.261 10 C -0.107 4.107 11 C -0.055 4.055 12 C -0.003 4.003 13 H 0.132 0.868 14 C -0.049 4.049 15 N -0.194 5.194 16 C -0.001 4.001 17 C -0.576 4.576 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.773 3.227 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.211 1.211 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.210 0.790 35 H 0.193 0.807 36 H 0.246 0.754 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.273 19.691 8.138 21.427 hybrid contribution 0.079 -1.363 -1.350 1.920 sum -2.194 18.328 6.788 19.667 Atomic orbital electron populations 1.22525 0.86598 1.02405 1.01561 1.61892 1.09039 1.14456 1.43437 1.22020 1.00832 0.87345 0.96552 1.21823 1.01837 0.94025 0.98237 1.22047 1.03346 0.92845 0.83190 1.45765 1.17084 1.38828 1.12066 1.23139 1.01246 1.07327 0.87101 1.22631 0.93267 1.03592 1.01404 1.70244 1.22386 1.26032 1.07475 1.25547 0.92654 0.97063 0.95465 1.22051 1.00907 0.89801 0.92735 1.19239 0.99607 0.94535 0.86919 0.86764 1.29379 0.91971 0.90533 0.93057 1.80986 1.11926 1.12079 1.14418 1.18996 0.96021 0.93485 0.91589 1.21573 1.35343 0.96432 1.04247 0.93018 1.25690 0.95305 1.02487 0.95224 1.70029 1.40703 1.36424 1.09074 0.85670 0.78139 0.80606 0.78321 1.19532 1.19752 1.21132 0.93703 0.91960 0.90733 0.92230 0.90172 0.92671 0.91146 0.87576 0.86226 0.78987 0.80685 0.75394 0.90969 0.90359 0.94529 0.97937 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.13 127.69 1.17 1.48 16 2 N -0.56 -12.14 4.46 -922.48 -4.12 -16.26 16 3 C 0.06 0.87 4.96 86.30 0.43 1.30 16 4 C -0.12 -1.56 5.46 30.59 0.17 -1.39 16 5 C 0.11 0.94 6.15 86.38 0.53 1.47 16 6 N -0.46 -6.65 2.75 -529.07 -1.46 -8.11 16 7 C -0.05 -0.90 11.58 83.09 0.96 0.06 16 8 C -0.06 -1.27 11.87 83.52 0.99 -0.27 16 9 N -0.54 -12.74 11.25 -200.31 -2.25 -15.00 16 10 C 0.18 2.98 12.56 180.26 2.26 5.25 16 11 C 0.07 1.87 4.32 86.30 0.37 2.25 16 12 C 0.02 0.65 2.14 -12.60 -0.03 0.62 16 13 H 0.11 3.65 6.26 -2.39 -0.01 3.64 16 14 C 0.27 10.77 13.67 89.44 1.22 12.00 16 15 N -0.52 -23.05 18.54 20.00 0.37 -22.68 16 16 C 0.04 1.69 4.42 29.85 0.13 1.82 16 17 C -0.54 -28.03 8.60 25.60 0.22 -27.81 16 18 H 0.05 2.70 7.59 -2.91 -0.02 2.67 16 19 C 0.01 0.64 5.46 84.65 0.46 1.11 16 20 N -0.92 -52.02 13.29 21.45 0.28 -51.74 16 21 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 1.34 6.21 -2.39 -0.01 1.32 16 27 H 0.07 1.25 6.47 -2.39 -0.02 1.24 16 28 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 29 H 0.08 1.12 7.93 -2.39 -0.02 1.11 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.95 6.55 -2.39 -0.02 0.94 16 32 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.23 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 38 H 0.08 2.01 7.93 -2.39 -0.02 1.99 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -70.25 347.99 4.75 -65.49 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.00 Total: 5.44 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 8.89 Total: -2.13 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -7.17 Total: -113.79 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.25 4.75 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181066358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.830 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.03 seconds