Wall clock time and date at job start Mon Mar 30 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47338 * 2 1 4 4 C 1.50696 * 109.46753 * 120.00635 * 2 1 3 5 5 C 1.38637 * 120.39926 * 274.99413 * 4 2 1 6 6 C 1.38579 * 118.55548 * 180.02562 * 5 4 2 7 7 N 1.32288 * 119.20023 * 359.97438 * 6 5 4 8 8 C 1.32476 * 120.74207 * 0.02562 * 7 6 5 9 9 N 1.38407 * 119.21608 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00247 * 0.02562 * 9 8 7 11 11 C 1.53236 * 109.34288 * 172.74630 * 10 9 8 12 12 N 1.47073 * 108.52248 * 53.82828 * 11 10 9 13 13 C 1.36939 * 120.88802 * 128.83957 * 12 11 10 14 14 H 1.08008 * 119.99350 * 333.67465 * 13 12 11 15 15 C 1.38804 * 120.00475 * 153.67817 * 13 12 11 16 16 N 1.31617 * 119.99782 * 159.62058 * 15 13 12 17 17 Si 1.86799 * 120.00195 * 339.61604 * 15 13 12 18 18 H 1.48503 * 109.47172 * 94.34069 * 17 15 13 19 19 H 1.48496 * 109.47242 * 214.34132 * 17 15 13 20 20 H 1.48501 * 109.46901 * 334.33998 * 17 15 13 21 21 C 1.47080 * 118.23695 * 308.81488 * 12 11 10 22 22 C 1.46891 * 111.00193 * 235.69688 * 9 8 7 23 23 N 1.32257 * 120.40607 * 95.29467 * 4 2 1 24 24 H 1.09003 * 109.47033 * 300.00227 * 1 2 3 25 25 H 1.09008 * 109.46896 * 59.99350 * 1 2 3 26 26 H 1.08996 * 109.47555 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47033 * 239.99773 * 2 1 3 28 28 H 1.09003 * 109.46983 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47482 * 299.99776 * 3 2 1 30 30 H 1.09000 * 109.46919 * 60.00581 * 3 2 1 31 31 H 1.07997 * 120.71524 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.39460 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.49429 * 52.78481 * 10 9 8 34 34 H 1.09003 * 109.51471 * 292.71997 * 10 9 8 35 35 H 1.09000 * 109.63155 * 173.54020 * 11 10 9 36 36 H 1.08999 * 109.63119 * 294.11670 * 11 10 9 37 37 H 0.97005 * 119.99872 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.62914 * 291.47617 * 21 12 11 39 39 H 1.08996 * 109.63267 * 170.89371 * 21 12 11 40 40 H 1.09000 * 109.49701 * 307.21680 * 22 9 8 41 41 H 1.08998 * 109.49382 * 67.29420 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 2.1679 -0.0271 2.4289 6 6 2.6337 -0.7179 3.5363 7 7 2.9327 -2.0010 3.4178 8 6 2.7916 -2.6249 2.2576 9 7 3.1144 -3.9679 2.1691 10 6 3.5827 -4.4832 3.4626 11 6 3.7558 -6.0029 3.3709 12 7 4.6301 -6.3055 2.2276 13 6 5.7214 -7.1197 2.3732 14 1 6.2046 -7.2080 3.3351 15 6 6.2065 -7.8315 1.2848 16 7 7.4429 -8.2828 1.2918 17 14 5.1047 -8.1491 -0.1898 18 1 5.3293 -7.0952 -1.2117 19 1 5.4254 -9.4777 -0.7704 20 1 3.6836 -8.1268 0.2403 21 6 4.3009 -5.7106 0.9233 22 6 4.1059 -4.2024 1.1110 23 7 2.3546 -1.9922 1.1785 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.9160 1.0208 2.4979 32 1 2.7511 -0.2146 4.4846 33 1 2.8510 -4.2464 4.2350 34 1 4.5384 -4.0227 3.7135 35 1 4.2109 -6.3757 4.2885 36 1 2.7840 -6.4739 3.2233 37 1 7.7821 -8.7799 0.5310 38 1 3.3814 -6.1535 0.5405 39 1 5.1164 -5.8901 0.2227 40 1 3.7537 -3.7620 0.1783 41 1 5.0545 -3.7458 1.3937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185841675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:03 Heat of formation + Delta-G solvation = 92.376733 kcal Electronic energy + Delta-G solvation = -21736.009143 eV Core-core repulsion = 18652.407970 eV Total energy + Delta-G solvation = -3083.601173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.22931 -38.45747 -36.28113 -34.56166 -33.10254 -31.66461 -30.59881 -30.14322 -27.53192 -26.80555 -24.96050 -23.69318 -23.10729 -22.32414 -20.72082 -19.43951 -17.54477 -17.45909 -16.58488 -15.88940 -15.28142 -14.97749 -14.68030 -14.38298 -14.25219 -14.05808 -13.98193 -13.70455 -13.32218 -12.89021 -12.55291 -12.47157 -12.06600 -11.93397 -11.70374 -11.55496 -11.37193 -11.05915 -10.76473 -10.69850 -10.54614 -10.44221 -10.13134 -9.96097 -9.84841 -9.46896 -9.05879 -8.66712 -8.14415 -7.01174 -5.95060 -3.31423 1.02388 1.16430 3.31291 3.33575 3.50386 3.54329 3.78066 4.09921 4.35856 4.53014 4.62837 4.78688 4.90839 4.94218 4.97276 5.08231 5.28798 5.32072 5.33090 5.48596 5.52610 5.58705 5.64148 5.66750 5.75987 5.87806 5.92291 5.95408 5.98504 6.06173 6.12682 6.31741 6.32804 6.54966 6.59315 6.82218 6.94864 7.04098 7.47847 7.91342 8.30082 8.31714 8.90420 9.70206 10.07925 11.20730 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.004565 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.678805 B = 6132.388577 C = 6709.096667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.145 4.145 4 C 0.208 3.792 5 C -0.273 4.273 6 C 0.173 3.827 7 N -0.556 5.556 8 C 0.504 3.496 9 N -0.455 5.455 10 C 0.057 3.943 11 C 0.148 3.852 12 N -0.609 5.609 13 C -0.261 4.261 14 H 0.088 0.912 15 C 0.023 3.977 16 N -0.908 5.908 17 Si 0.880 3.120 18 H -0.288 1.288 19 H -0.302 1.302 20 H -0.267 1.267 21 C 0.129 3.871 22 C 0.056 3.944 23 N -0.533 5.533 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.685 19.766 0.002 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.203 4.203 4 C 0.059 3.941 5 C -0.297 4.297 6 C 0.006 3.994 7 N -0.276 5.276 8 C 0.149 3.851 9 N -0.173 5.173 10 C -0.071 4.071 11 C 0.022 3.978 12 N -0.333 5.333 13 C -0.389 4.389 14 H 0.106 0.894 15 C -0.176 4.176 16 N -0.551 5.551 17 Si 0.710 3.290 18 H -0.216 1.216 19 H -0.230 1.230 20 H -0.192 1.192 21 C 0.003 3.997 22 C -0.071 4.071 23 N -0.252 5.252 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.668 18.278 -0.252 22.240 hybrid contribution -0.218 1.016 -0.554 1.177 sum -12.886 19.294 -0.806 23.215 Atomic orbital electron populations 1.21777 0.93173 1.02616 1.02174 1.20114 0.96480 0.95456 0.94784 1.21898 1.01467 0.94535 1.02400 1.21472 0.89092 0.88847 0.94688 1.22459 1.09327 1.02949 0.94969 1.23017 0.88818 0.89208 0.98350 1.68446 1.21083 1.10799 1.27272 1.21318 0.89424 0.89978 0.84374 1.58364 1.41814 1.07099 1.10032 1.22653 0.99516 0.97598 0.87360 1.21122 0.94057 0.90711 0.91919 1.44462 1.29457 1.54924 1.04471 1.18940 1.02251 1.19031 0.98642 0.89446 1.25249 0.96303 0.97992 0.98025 1.69833 1.13694 1.40123 1.31485 0.86989 0.82358 0.76551 0.83073 1.21582 1.23021 1.19220 1.21509 0.99438 0.89148 0.89570 1.22809 0.91202 1.00476 0.92650 1.67841 1.16308 1.09706 1.31308 0.92441 0.91625 0.92102 0.88811 0.92284 0.91635 0.92028 0.84013 0.81869 0.90076 0.92909 0.90778 0.94987 0.92732 0.94345 0.90111 0.89673 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.17 37.16 0.34 -0.80 16 2 C -0.05 -0.47 3.27 -91.78 -0.30 -0.77 16 3 C -0.15 -1.02 8.64 37.16 0.32 -0.70 16 4 C 0.21 2.64 5.82 -82.26 -0.48 2.16 16 5 C -0.27 -2.94 9.25 -39.31 -0.36 -3.31 16 6 C 0.17 2.08 11.30 -17.23 -0.19 1.89 16 7 N -0.56 -8.87 8.66 -13.93 -0.12 -8.99 16 8 C 0.50 8.89 7.18 -322.81 -2.32 6.57 16 9 N -0.45 -8.70 4.69 -175.11 -0.82 -9.52 16 10 C 0.06 1.06 4.80 -3.70 -0.02 1.04 16 11 C 0.15 3.04 6.69 -3.61 -0.02 3.02 16 12 N -0.61 -14.89 2.82 -172.02 -0.49 -15.38 16 13 C -0.26 -7.35 10.08 -15.06 -0.15 -7.50 16 14 H 0.09 2.61 8.05 -52.48 -0.42 2.19 16 15 C 0.02 0.67 5.25 -17.43 -0.09 0.58 16 16 N -0.91 -27.98 13.97 55.49 0.78 -27.21 16 17 Si 0.88 22.53 24.32 -169.99 -4.13 18.40 16 18 H -0.29 -7.10 6.68 56.52 0.38 -6.72 16 19 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 20 H -0.27 -6.77 6.42 56.52 0.36 -6.41 16 21 C 0.13 2.95 4.34 -3.60 -0.02 2.93 16 22 C 0.06 1.11 5.49 -3.71 -0.02 1.09 16 23 N -0.53 -8.73 9.56 -10.15 -0.10 -8.83 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 31 H 0.14 1.06 6.43 -52.49 -0.34 0.72 16 32 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.08 1.38 7.62 -51.93 -0.40 0.99 16 34 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 35 H 0.07 1.46 7.95 -51.93 -0.41 1.04 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.04 0.89 6.84 -51.93 -0.36 0.53 16 39 H 0.08 1.96 4.63 -51.93 -0.24 1.72 16 40 H 0.08 1.59 7.50 -51.93 -0.39 1.20 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -32.61 320.75 -9.68 -42.29 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.32 Total: -1.82 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -3.31 Total: 6.21 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -0.75 Total: -69.92 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.13 Total: 18.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.61 -9.68 -42.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185841675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.667 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds