Wall clock time and date at job start Mon Mar 30 2020 02:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47338 * 2 1 4 4 C 1.50696 * 109.46753 * 120.00635 * 2 1 3 5 5 C 1.38637 * 120.39926 * 274.99413 * 4 2 1 6 6 C 1.38579 * 118.55548 * 180.02562 * 5 4 2 7 7 N 1.32288 * 119.20023 * 359.97438 * 6 5 4 8 8 C 1.32476 * 120.74207 * 0.02562 * 7 6 5 9 9 N 1.38407 * 119.21608 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00247 * 0.02562 * 9 8 7 11 11 C 1.53236 * 109.34288 * 172.74630 * 10 9 8 12 12 N 1.47073 * 108.52248 * 53.82828 * 11 10 9 13 13 C 1.36939 * 120.88802 * 128.83957 * 12 11 10 14 14 H 1.08008 * 119.99350 * 333.67465 * 13 12 11 15 15 C 1.38804 * 120.00475 * 153.67817 * 13 12 11 16 16 N 1.31617 * 119.99782 * 159.62058 * 15 13 12 17 17 Si 1.86799 * 120.00195 * 339.61604 * 15 13 12 18 18 H 1.48503 * 109.47172 * 94.34069 * 17 15 13 19 19 H 1.48496 * 109.47242 * 214.34132 * 17 15 13 20 20 H 1.48501 * 109.46901 * 334.33998 * 17 15 13 21 21 C 1.47080 * 118.23695 * 308.81488 * 12 11 10 22 22 C 1.46891 * 111.00193 * 235.69688 * 9 8 7 23 23 N 1.32257 * 120.40607 * 95.29467 * 4 2 1 24 24 H 1.09003 * 109.47033 * 300.00227 * 1 2 3 25 25 H 1.09008 * 109.46896 * 59.99350 * 1 2 3 26 26 H 1.08996 * 109.47555 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47033 * 239.99773 * 2 1 3 28 28 H 1.09003 * 109.46983 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47482 * 299.99776 * 3 2 1 30 30 H 1.09000 * 109.46919 * 60.00581 * 3 2 1 31 31 H 1.07997 * 120.71524 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.39460 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.49429 * 52.78481 * 10 9 8 34 34 H 1.09003 * 109.51471 * 292.71997 * 10 9 8 35 35 H 1.09000 * 109.63155 * 173.54020 * 11 10 9 36 36 H 1.08999 * 109.63119 * 294.11670 * 11 10 9 37 37 H 0.97005 * 119.99872 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.62914 * 291.47617 * 21 12 11 39 39 H 1.08996 * 109.63267 * 170.89371 * 21 12 11 40 40 H 1.09000 * 109.49701 * 307.21680 * 22 9 8 41 41 H 1.08998 * 109.49382 * 67.29420 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 2.1679 -0.0271 2.4289 6 6 2.6337 -0.7179 3.5363 7 7 2.9327 -2.0010 3.4178 8 6 2.7916 -2.6249 2.2576 9 7 3.1144 -3.9679 2.1691 10 6 3.5827 -4.4832 3.4626 11 6 3.7558 -6.0029 3.3709 12 7 4.6301 -6.3055 2.2276 13 6 5.7214 -7.1197 2.3732 14 1 6.2046 -7.2080 3.3351 15 6 6.2065 -7.8315 1.2848 16 7 7.4429 -8.2828 1.2918 17 14 5.1047 -8.1491 -0.1898 18 1 5.3293 -7.0952 -1.2117 19 1 5.4254 -9.4777 -0.7704 20 1 3.6836 -8.1268 0.2403 21 6 4.3009 -5.7106 0.9233 22 6 4.1059 -4.2024 1.1110 23 7 2.3546 -1.9922 1.1785 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.9160 1.0208 2.4979 32 1 2.7511 -0.2146 4.4846 33 1 2.8510 -4.2464 4.2350 34 1 4.5384 -4.0227 3.7135 35 1 4.2109 -6.3757 4.2885 36 1 2.7840 -6.4739 3.2233 37 1 7.7821 -8.7799 0.5310 38 1 3.3814 -6.1535 0.5405 39 1 5.1164 -5.8901 0.2227 40 1 3.7537 -3.7620 0.1783 41 1 5.0545 -3.7458 1.3937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185841675.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:02 Heat of formation + Delta-G solvation = 71.706620 kcal Electronic energy + Delta-G solvation = -21736.905467 eV Core-core repulsion = 18652.407970 eV Total energy + Delta-G solvation = -3084.497496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34013 -39.92552 -37.34322 -36.09808 -34.25553 -33.59484 -32.20078 -31.37752 -28.65778 -27.97598 -26.08220 -25.21290 -24.61850 -23.78768 -21.89391 -20.91467 -19.08928 -18.63148 -18.19205 -17.19119 -16.59527 -16.50101 -15.98128 -15.89212 -15.57309 -15.40573 -15.14381 -14.72994 -14.64667 -14.43255 -14.06814 -13.86763 -13.55621 -13.03285 -12.83626 -12.53161 -12.46290 -12.31365 -12.21018 -12.15487 -12.01534 -11.87268 -11.71305 -11.56545 -11.45413 -11.05686 -10.78232 -10.13571 -9.45482 -9.02679 -8.19496 -5.53067 -0.04206 0.18435 1.28671 1.40729 1.50157 2.08224 2.39016 2.73220 2.99952 3.11579 3.25509 3.44443 3.62335 3.98704 3.99850 4.07316 4.12920 4.22064 4.23958 4.28497 4.33853 4.42860 4.50216 4.60330 4.67650 4.76832 4.80929 4.81755 4.87745 4.91901 4.97982 5.14432 5.18069 5.29602 5.36501 5.37148 5.56289 5.78463 5.81268 6.08861 6.31527 6.81803 7.18278 7.54075 7.96306 8.99994 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.004565 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.678805 B = 6132.388577 C = 6709.096667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C -0.140 4.140 4 C 0.191 3.809 5 C -0.250 4.250 6 C 0.164 3.836 7 N -0.576 5.576 8 C 0.480 3.520 9 N -0.467 5.467 10 C 0.075 3.925 11 C 0.146 3.854 12 N -0.622 5.622 13 C -0.252 4.252 14 H 0.058 0.942 15 C -0.030 4.030 16 N -0.954 5.954 17 Si 0.942 3.058 18 H -0.273 1.273 19 H -0.307 1.307 20 H -0.262 1.262 21 C 0.129 3.871 22 C 0.073 3.927 23 N -0.558 5.558 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.184 0.816 32 H 0.203 0.797 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 22.963 -0.209 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.198 4.198 4 C 0.044 3.956 5 C -0.272 4.272 6 C -0.002 4.002 7 N -0.297 5.297 8 C 0.124 3.876 9 N -0.186 5.186 10 C -0.053 4.053 11 C 0.021 3.979 12 N -0.347 5.347 13 C -0.381 4.381 14 H 0.076 0.924 15 C -0.225 4.225 16 N -0.600 5.600 17 Si 0.770 3.230 18 H -0.200 1.200 19 H -0.235 1.235 20 H -0.186 1.186 21 C 0.004 3.996 22 C -0.055 4.055 23 N -0.277 5.277 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.201 0.799 32 H 0.220 0.780 33 H 0.117 0.883 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.047 21.551 -0.452 26.288 hybrid contribution 0.460 0.230 -0.395 0.648 sum -14.586 21.781 -0.847 26.227 Atomic orbital electron populations 1.21759 0.92064 1.01654 1.03789 1.20229 0.97256 0.96537 0.92771 1.21889 1.00942 0.92754 1.04174 1.22160 0.88710 0.87955 0.96785 1.22915 1.06290 1.04563 0.93476 1.23761 0.87955 0.88006 1.00455 1.68402 1.21812 1.12783 1.26687 1.21154 0.91232 0.89636 0.85600 1.58317 1.41631 1.09260 1.09412 1.22380 0.99248 0.95593 0.88078 1.21266 0.93552 0.92398 0.90675 1.44570 1.29323 1.54664 1.06169 1.18890 1.02859 1.18958 0.97443 0.92377 1.25836 0.97233 0.98392 1.01082 1.69952 1.15371 1.41906 1.32779 0.85985 0.80545 0.76261 0.80172 1.20002 1.23513 1.18604 1.21465 0.98649 0.91082 0.88440 1.22474 0.91197 0.97982 0.93857 1.67809 1.17008 1.11601 1.31316 0.91231 0.89618 0.94334 0.90284 0.93079 0.89971 0.90216 0.79870 0.77987 0.88305 0.94490 0.90515 0.94149 0.92780 0.94038 0.91809 0.88554 0.95036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.17 71.98 0.66 -1.17 16 2 C -0.05 -0.80 3.27 -11.54 -0.04 -0.83 16 3 C -0.14 -1.42 8.64 71.98 0.62 -0.80 16 4 C 0.19 4.40 5.82 42.59 0.25 4.65 16 5 C -0.25 -4.40 9.25 22.45 0.21 -4.19 16 6 C 0.16 3.38 11.30 84.71 0.96 4.34 16 7 N -0.58 -17.38 8.66 -198.00 -1.72 -19.09 16 8 C 0.48 16.45 7.18 261.49 1.88 18.33 16 9 N -0.47 -17.66 4.69 -707.91 -3.32 -20.98 16 10 C 0.08 2.77 4.80 86.38 0.41 3.19 16 11 C 0.15 6.00 6.69 86.35 0.58 6.58 16 12 N -0.62 -30.77 2.82 -698.16 -1.97 -32.75 16 13 C -0.25 -14.64 10.08 84.03 0.85 -13.79 16 14 H 0.06 3.64 8.05 -2.91 -0.02 3.61 16 15 C -0.03 -1.80 5.25 84.86 0.45 -1.36 16 16 N -0.95 -60.56 13.97 21.65 0.30 -60.26 16 17 Si 0.94 47.33 24.32 68.60 1.67 49.00 16 18 H -0.27 -12.97 6.68 99.48 0.66 -12.30 16 19 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 20 H -0.26 -12.77 6.42 99.48 0.64 -12.13 16 21 C 0.13 5.87 4.34 86.35 0.37 6.25 16 22 C 0.07 2.90 5.49 86.38 0.47 3.38 16 23 N -0.56 -17.66 9.56 -186.03 -1.78 -19.44 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.52 6.57 -2.39 -0.02 0.51 16 31 H 0.18 1.64 6.43 -2.91 -0.02 1.62 16 32 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 33 H 0.10 3.27 7.62 -2.38 -0.02 3.25 16 34 H 0.04 1.46 8.13 -2.39 -0.02 1.44 16 35 H 0.08 3.05 7.95 -2.39 -0.02 3.03 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 38 H 0.04 1.88 6.84 -2.39 -0.02 1.86 16 39 H 0.06 3.10 4.63 -2.39 -0.01 3.09 16 40 H 0.10 3.58 7.50 -2.39 -0.02 3.56 16 41 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -72.71 320.75 1.76 -70.96 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.90 Total: 7.99 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 7.67 Total: 24.57 kcal Atomic # 7 Polarization: -144.03 SS G_CDS: -8.48 Total: -152.51 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.67 Total: 49.00 kcal Total: -72.71 1.76 -70.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185841675.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.662 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds