Wall clock time and date at job start Mon Mar 30 2020 02:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.46953 * 2 1 4 4 C 1.46904 * 110.99936 * 70.01801 * 3 2 1 5 5 C 1.50703 * 109.47146 * 71.94594 * 4 3 2 6 6 C 1.39864 * 126.03993 * 273.58268 * 5 4 3 7 7 N 1.30841 * 108.20324 * 179.81916 * 6 5 4 8 8 N 1.40086 * 108.20341 * 0.43711 * 7 6 5 9 9 C 1.46498 * 126.03466 * 179.69700 * 8 7 6 10 10 C 1.34943 * 107.92194 * 359.72108 * 8 7 6 11 11 C 1.46890 * 111.00219 * 306.06363 * 3 2 1 12 12 C 1.53000 * 109.47134 * 286.16473 * 11 3 2 13 13 H 1.08994 * 109.47499 * 306.46187 * 12 11 3 14 14 C 1.47207 * 109.47029 * 66.46122 * 12 11 3 15 15 N 3.04069 * 88.10183 * 255.64209 * 2 1 3 16 16 C 1.53005 * 109.47247 * 186.46157 * 12 11 3 17 17 C 1.50701 * 109.46850 * 175.00461 * 16 12 11 18 18 H 1.07998 * 120.00353 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99833 * 179.72877 * 17 16 12 20 20 N 1.31522 * 119.99762 * 0.26557 * 19 17 16 21 21 Si 1.86797 * 120.00094 * 180.27346 * 19 17 16 22 22 H 1.48499 * 109.47154 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47304 * 119.99475 * 21 19 17 24 24 H 1.48506 * 109.46957 * 239.99590 * 21 19 17 25 25 H 1.09002 * 109.47180 * 185.08966 * 1 2 3 26 26 H 1.09007 * 109.47354 * 305.08555 * 1 2 3 27 27 H 1.08997 * 109.47193 * 65.08961 * 1 2 3 28 28 H 1.08996 * 109.46904 * 240.00030 * 2 1 3 29 29 H 1.09004 * 109.46898 * 120.00192 * 2 1 3 30 30 H 1.09000 * 109.46995 * 191.94673 * 4 3 2 31 31 H 1.08994 * 109.47327 * 311.94625 * 4 3 2 32 32 H 1.08007 * 125.89854 * 359.97438 * 6 5 4 33 33 H 1.08999 * 109.47014 * 270.02392 * 9 8 7 34 34 H 1.08999 * 109.47265 * 30.02685 * 9 8 7 35 35 H 1.09006 * 109.46788 * 150.02533 * 9 8 7 36 36 H 1.08007 * 126.12686 * 179.97438 * 10 8 7 37 37 H 1.09004 * 109.47432 * 166.16509 * 11 3 2 38 38 H 1.08999 * 109.47459 * 46.16927 * 11 3 2 39 39 H 1.08999 * 109.47241 * 55.00169 * 16 12 11 40 40 H 1.09001 * 109.46988 * 295.00166 * 16 12 11 41 41 H 0.96999 * 119.99669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7532 2.0375 1.2889 5 6 2.6713 1.4679 2.3396 6 6 2.4335 0.3229 3.1068 7 7 3.4559 0.1454 3.9039 8 7 4.3733 1.1792 3.6757 9 6 5.6541 1.3621 4.3628 10 6 3.8685 1.9771 2.7115 11 6 1.4340 2.1504 -1.1085 12 6 2.0818 1.7176 -2.4254 13 1 3.1655 1.7971 -2.3406 14 6 1.7135 0.3228 -2.7182 15 7 1.4293 -0.7536 -2.9441 16 6 1.5910 2.6230 -3.5569 17 6 2.3203 2.2767 -4.8294 18 1 3.0601 1.4900 -4.8309 19 6 2.0394 2.9610 -5.9930 20 7 1.1387 3.9194 -5.9912 21 14 2.9378 2.5267 -7.5721 22 1 3.8946 1.4217 -7.3094 23 1 1.9548 2.0971 -8.5989 24 1 3.6789 3.7162 -8.0632 25 1 -0.3634 -1.0236 0.0912 26 1 -0.3634 0.5907 0.8410 27 1 -0.3633 0.4328 -0.9320 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9278 3.1095 1.1964 31 1 0.7171 1.8618 1.5779 32 1 1.5584 -0.3075 3.0494 33 1 5.5060 1.9784 5.2495 34 1 6.0502 0.3903 4.6577 35 1 6.3592 1.8535 3.6923 36 1 4.3361 2.8636 2.3091 37 1 1.6108 3.2141 -0.9490 38 1 0.3611 1.9631 -1.1525 39 1 1.7844 3.6642 -3.2990 40 1 0.5204 2.4771 -3.7005 41 1 0.9408 4.4005 -6.8099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195519443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:26 Heat of formation + Delta-G solvation = 112.706172 kcal Electronic energy + Delta-G solvation = -21094.966643 eV Core-core repulsion = 18012.247021 eV Total energy + Delta-G solvation = -3082.719622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26183 -38.64941 -35.74867 -33.83416 -33.33433 -31.85327 -31.21788 -29.32465 -27.77190 -26.33688 -24.70999 -23.84372 -21.79612 -21.15391 -20.66901 -19.66443 -16.89585 -16.75651 -16.44639 -15.72973 -15.55718 -15.15478 -14.65528 -14.45564 -14.03885 -13.49685 -13.24750 -13.04650 -13.02134 -12.81072 -12.46114 -12.41264 -12.28816 -12.04182 -11.81181 -11.52876 -11.32784 -11.14947 -10.95166 -10.70660 -10.61299 -10.53278 -10.26711 -10.10781 -9.50617 -9.42718 -9.19488 -8.48909 -8.43881 -7.97689 -6.07949 -4.10512 1.83972 2.44059 2.72349 3.29508 3.37776 3.42780 3.66467 3.72536 4.28351 4.39888 4.44572 4.78831 4.86430 4.90778 4.98805 5.15755 5.22540 5.26150 5.30121 5.33059 5.44150 5.55675 5.61417 5.72597 5.75171 5.82259 6.08812 6.12351 6.14406 6.24015 6.42622 6.51061 6.57892 6.61497 6.93314 7.29498 7.32398 7.46561 7.57079 7.63261 7.87963 8.26142 8.48320 8.94524 9.54861 11.02978 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.003699 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.852829 B = 7566.975104 C = 7994.054117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.033 3.967 3 N -0.532 5.532 4 C 0.127 3.873 5 C -0.221 4.221 6 C 0.054 3.946 7 N -0.304 5.304 8 N -0.381 5.381 9 C 0.104 3.896 10 C 0.071 3.929 11 C 0.055 3.945 12 C 0.009 3.991 13 H 0.108 0.892 14 C 0.253 3.747 15 N -0.482 5.482 16 C 0.032 3.968 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.177 0.823 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.174 0.826 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.024 0.976 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -0.256 20.042 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.096 4.096 3 N -0.255 5.255 4 C -0.002 4.002 5 C -0.233 4.233 6 C -0.133 4.133 7 N -0.126 5.126 8 N -0.164 5.164 9 C -0.038 4.038 10 C -0.076 4.076 11 C -0.074 4.074 12 C -0.013 4.013 13 H 0.126 0.874 14 C -0.062 4.062 15 N -0.160 5.160 16 C -0.006 4.006 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.194 0.806 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.192 0.808 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.124 -2.467 20.511 21.284 hybrid contribution -0.613 0.727 -1.480 1.759 sum 4.511 -1.740 19.030 19.635 Atomic orbital electron populations 1.22386 0.98465 1.02016 1.02017 1.22492 0.92877 0.90662 1.03521 1.62315 1.58699 1.02165 1.02315 1.20348 0.95318 0.97745 0.86756 1.19940 0.98501 1.00324 1.04514 1.23756 0.97612 0.97280 0.94617 1.77321 1.01006 1.09565 1.24661 1.48418 1.16890 1.20384 1.30671 1.21809 0.80963 1.03635 0.97384 1.22339 0.95243 0.97760 0.92249 1.22366 0.97452 0.98319 0.89223 1.19308 1.02304 0.83860 0.95818 0.87396 1.29126 0.92204 0.94610 0.90278 1.81030 1.10245 1.13478 1.11249 1.19166 0.97136 0.94001 0.90346 1.21197 1.22321 1.18919 0.93765 0.92484 1.24951 0.95106 0.94933 0.99008 1.69951 1.32462 1.22738 1.27930 0.86554 0.79765 0.78396 0.83483 1.19681 1.21029 1.20855 0.92473 0.92649 0.91977 0.89629 0.91021 0.90171 0.93722 0.80596 0.91016 0.89540 0.89462 0.80850 0.89154 0.93351 0.94294 0.95805 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 8.98 37.16 0.33 -2.19 16 2 C 0.03 0.47 5.37 -3.82 -0.02 0.44 16 3 N -0.53 -7.15 4.60 -236.08 -1.09 -8.23 16 4 C 0.13 1.40 5.36 -4.97 -0.03 1.37 16 5 C -0.22 -2.51 5.23 -105.05 -0.55 -3.06 16 6 C 0.05 0.64 10.46 -17.37 -0.18 0.46 16 7 N -0.30 -3.93 12.58 30.63 0.39 -3.54 16 8 N -0.38 -4.05 4.01 -68.16 -0.27 -4.32 16 9 C 0.10 0.65 11.47 59.85 0.69 1.33 16 10 C 0.07 0.72 11.40 -17.23 -0.20 0.53 16 11 C 0.05 0.80 4.44 -3.83 -0.02 0.79 16 12 C 0.01 0.17 2.41 -93.40 -0.23 -0.06 16 13 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 14 C 0.25 5.16 10.26 -20.76 -0.21 4.95 16 15 N -0.48 -10.49 17.57 42.15 0.74 -9.75 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 17 C -0.52 -13.93 8.60 -34.44 -0.30 -14.23 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.63 6.33 -51.93 -0.33 0.31 16 27 H 0.06 0.94 5.81 -51.93 -0.30 0.63 16 28 H 0.09 1.45 4.43 -51.93 -0.23 1.22 16 29 H 0.07 0.96 5.81 -51.93 -0.30 0.66 16 30 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 31 H 0.04 0.48 6.17 -51.93 -0.32 0.15 16 32 H 0.18 1.77 7.82 -52.48 -0.41 1.36 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.09 1.18 7.69 -51.93 -0.40 0.78 16 38 H 0.05 0.72 5.57 -51.93 -0.29 0.43 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -31.97 335.05 -6.29 -38.27 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.90 Total: -1.64 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.93 Total: -7.44 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.50 Total: -50.55 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.97 -6.29 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195519443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.972 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds