Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.46953 * 2 1 4 4 C 1.46904 * 110.99936 * 70.01801 * 3 2 1 5 5 C 1.50703 * 109.47146 * 71.94594 * 4 3 2 6 6 C 1.39864 * 126.03993 * 273.58268 * 5 4 3 7 7 N 1.30841 * 108.20324 * 179.81916 * 6 5 4 8 8 N 1.40086 * 108.20341 * 0.43711 * 7 6 5 9 9 C 1.46498 * 126.03466 * 179.69700 * 8 7 6 10 10 C 1.34943 * 107.92194 * 359.72108 * 8 7 6 11 11 C 1.46890 * 111.00219 * 306.06363 * 3 2 1 12 12 C 1.53000 * 109.47134 * 286.16473 * 11 3 2 13 13 H 1.08994 * 109.47499 * 306.46187 * 12 11 3 14 14 C 1.47207 * 109.47029 * 66.46122 * 12 11 3 15 15 N 3.04069 * 88.10183 * 255.64209 * 2 1 3 16 16 C 1.53005 * 109.47247 * 186.46157 * 12 11 3 17 17 C 1.50701 * 109.46850 * 175.00461 * 16 12 11 18 18 H 1.07998 * 120.00353 * 359.97438 * 17 16 12 19 19 C 1.37879 * 119.99833 * 179.72877 * 17 16 12 20 20 N 1.31522 * 119.99762 * 0.26557 * 19 17 16 21 21 Si 1.86797 * 120.00094 * 180.27346 * 19 17 16 22 22 H 1.48499 * 109.47154 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47304 * 119.99475 * 21 19 17 24 24 H 1.48506 * 109.46957 * 239.99590 * 21 19 17 25 25 H 1.09002 * 109.47180 * 185.08966 * 1 2 3 26 26 H 1.09007 * 109.47354 * 305.08555 * 1 2 3 27 27 H 1.08997 * 109.47193 * 65.08961 * 1 2 3 28 28 H 1.08996 * 109.46904 * 240.00030 * 2 1 3 29 29 H 1.09004 * 109.46898 * 120.00192 * 2 1 3 30 30 H 1.09000 * 109.46995 * 191.94673 * 4 3 2 31 31 H 1.08994 * 109.47327 * 311.94625 * 4 3 2 32 32 H 1.08007 * 125.89854 * 359.97438 * 6 5 4 33 33 H 1.08999 * 109.47014 * 270.02392 * 9 8 7 34 34 H 1.08999 * 109.47265 * 30.02685 * 9 8 7 35 35 H 1.09006 * 109.46788 * 150.02533 * 9 8 7 36 36 H 1.08007 * 126.12686 * 179.97438 * 10 8 7 37 37 H 1.09004 * 109.47432 * 166.16509 * 11 3 2 38 38 H 1.08999 * 109.47459 * 46.16927 * 11 3 2 39 39 H 1.08999 * 109.47241 * 55.00169 * 16 12 11 40 40 H 1.09001 * 109.46988 * 295.00166 * 16 12 11 41 41 H 0.96999 * 119.99669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7532 2.0375 1.2889 5 6 2.6713 1.4679 2.3396 6 6 2.4335 0.3229 3.1068 7 7 3.4559 0.1454 3.9039 8 7 4.3733 1.1792 3.6757 9 6 5.6541 1.3621 4.3628 10 6 3.8685 1.9771 2.7115 11 6 1.4340 2.1504 -1.1085 12 6 2.0818 1.7176 -2.4254 13 1 3.1655 1.7971 -2.3406 14 6 1.7135 0.3228 -2.7182 15 7 1.4293 -0.7536 -2.9441 16 6 1.5910 2.6230 -3.5569 17 6 2.3203 2.2767 -4.8294 18 1 3.0601 1.4900 -4.8309 19 6 2.0394 2.9610 -5.9930 20 7 1.1387 3.9194 -5.9912 21 14 2.9378 2.5267 -7.5721 22 1 3.8946 1.4217 -7.3094 23 1 1.9548 2.0971 -8.5989 24 1 3.6789 3.7162 -8.0632 25 1 -0.3634 -1.0236 0.0912 26 1 -0.3634 0.5907 0.8410 27 1 -0.3633 0.4328 -0.9320 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9278 3.1095 1.1964 31 1 0.7171 1.8618 1.5779 32 1 1.5584 -0.3075 3.0494 33 1 5.5060 1.9784 5.2495 34 1 6.0502 0.3903 4.6577 35 1 6.3592 1.8535 3.6923 36 1 4.3361 2.8636 2.3091 37 1 1.6108 3.2141 -0.9490 38 1 0.3611 1.9631 -1.1525 39 1 1.7844 3.6642 -3.2990 40 1 0.5204 2.4771 -3.7005 41 1 0.9408 4.4005 -6.8099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195519443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = 92.305760 kcal Electronic energy + Delta-G solvation = -21095.851272 eV Core-core repulsion = 18012.247021 eV Total energy + Delta-G solvation = -3083.604250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.05409 -39.87856 -37.20552 -35.61332 -34.20822 -33.51872 -32.14507 -30.45676 -28.87884 -27.58562 -25.66513 -25.24782 -23.55766 -21.93927 -21.68965 -20.59794 -18.45334 -18.29051 -17.54711 -16.93397 -16.62637 -16.34371 -16.01810 -15.52187 -15.09906 -14.74163 -14.51693 -14.29460 -14.09366 -13.91258 -13.78920 -13.56356 -13.35366 -13.20441 -13.06735 -13.01713 -12.70803 -12.57076 -12.47805 -12.33780 -12.11867 -11.85355 -11.63042 -11.41622 -11.18994 -11.00786 -10.52440 -10.25093 -9.33650 -8.99756 -8.16957 -6.24340 1.06679 1.39871 1.43184 1.53422 1.78674 1.87841 2.05177 2.08347 2.43509 3.18418 3.24896 3.35124 3.73707 4.10689 4.13300 4.23214 4.30699 4.38404 4.41383 4.50176 4.50797 4.60794 4.64302 4.74709 4.80101 4.81821 4.93363 4.99850 5.02833 5.09490 5.21037 5.27517 5.42856 5.52020 5.68902 5.77336 5.83561 6.17131 6.24397 6.26685 6.33392 6.82872 6.83389 6.92392 7.43888 8.93966 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.003699 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.852829 B = 7566.975104 C = 7994.054117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.037 3.963 3 N -0.534 5.534 4 C 0.131 3.869 5 C -0.238 4.238 6 C 0.043 3.957 7 N -0.341 5.341 8 N -0.384 5.384 9 C 0.095 3.905 10 C 0.074 3.926 11 C 0.065 3.935 12 C 0.019 3.981 13 H 0.117 0.883 14 C 0.261 3.739 15 N -0.511 5.511 16 C 0.040 3.960 17 C -0.536 4.536 18 H 0.051 0.949 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.946 3.054 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.185 0.815 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.203 0.797 37 H 0.113 0.887 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.000 1.000 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 0.684 21.020 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.091 4.091 3 N -0.257 5.257 4 C 0.004 3.996 5 C -0.250 4.250 6 C -0.142 4.142 7 N -0.163 5.163 8 N -0.167 5.167 9 C -0.045 4.045 10 C -0.073 4.073 11 C -0.064 4.064 12 C -0.003 4.003 13 H 0.134 0.866 14 C -0.054 4.054 15 N -0.189 5.189 16 C 0.001 3.999 17 C -0.575 4.575 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.562 5.562 21 Si 0.772 3.228 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.201 0.799 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.220 0.780 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.188 -1.535 21.511 22.436 hybrid contribution -0.890 0.431 -1.726 1.990 sum 5.297 -1.104 19.785 20.512 Atomic orbital electron populations 1.22311 0.97846 1.02267 1.01735 1.22353 0.93301 0.91113 1.02343 1.62242 1.58561 1.01716 1.03164 1.20380 0.95678 0.98436 0.85141 1.20032 0.99316 1.00629 1.05027 1.23988 0.97800 0.97749 0.94665 1.77257 1.02015 1.11213 1.25858 1.48777 1.17508 1.19689 1.30699 1.22135 0.79788 1.04205 0.98421 1.22842 0.94868 0.98122 0.91486 1.22237 0.96874 0.99544 0.87763 1.19246 1.02885 0.81794 0.96360 0.86558 1.29510 0.91475 0.94921 0.89497 1.81016 1.11190 1.14451 1.12219 1.18979 0.95265 0.94886 0.90744 1.21584 1.22154 1.18343 0.95388 0.93114 1.25675 0.95942 0.95077 1.01950 1.70034 1.33721 1.23716 1.28753 0.85685 0.78671 0.78406 0.80048 1.19587 1.21212 1.19704 0.92476 0.90565 0.94006 0.92526 0.90336 0.88334 0.93137 0.79861 0.89488 0.89683 0.87044 0.78002 0.86869 0.93591 0.94271 0.98206 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.67 8.98 71.98 0.65 -4.03 16 2 C 0.04 1.03 5.37 86.31 0.46 1.49 16 3 N -0.53 -13.26 4.60 -900.81 -4.14 -17.40 16 4 C 0.13 2.54 5.36 85.56 0.46 3.00 16 5 C -0.24 -4.88 5.23 -20.14 -0.11 -4.98 16 6 C 0.04 0.98 10.46 85.23 0.89 1.87 16 7 N -0.34 -8.47 12.58 -57.02 -0.72 -9.19 16 8 N -0.38 -7.40 4.01 -369.56 -1.48 -8.88 16 9 C 0.09 0.97 11.47 127.77 1.47 2.43 16 10 C 0.07 1.32 11.40 83.54 0.95 2.27 16 11 C 0.06 1.77 4.44 86.31 0.38 2.15 16 12 C 0.02 0.69 2.41 -12.60 -0.03 0.66 16 13 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 14 C 0.26 10.62 10.26 89.44 0.92 11.54 16 15 N -0.51 -22.40 17.57 20.01 0.35 -22.05 16 16 C 0.04 1.83 4.42 29.85 0.13 1.96 16 17 C -0.54 -28.45 8.60 25.60 0.22 -28.23 16 18 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 19 C 0.01 0.68 5.46 84.65 0.46 1.14 16 20 N -0.92 -52.60 13.29 21.45 0.28 -52.31 16 21 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.60 6.33 -2.38 -0.02 1.59 16 27 H 0.04 1.24 5.81 -2.39 -0.01 1.22 16 28 H 0.06 1.90 4.43 -2.39 -0.01 1.89 16 29 H 0.08 2.04 5.81 -2.38 -0.01 2.02 16 30 H 0.10 1.56 7.71 -2.39 -0.02 1.55 16 31 H 0.05 0.93 6.17 -2.39 -0.01 0.92 16 32 H 0.18 3.55 7.82 -2.91 -0.02 3.52 16 33 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.11 2.62 7.69 -2.38 -0.02 2.60 16 38 H 0.05 1.31 5.57 -2.39 -0.01 1.30 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -68.37 335.05 4.20 -64.16 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.03 Total: 8.85 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 6.86 Total: -8.72 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -5.71 Total: -109.84 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.37 4.20 -64.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195519443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.469 kcal (2) G-P(sol) polarization free energy of solvation -68.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds