Wall clock time and date at job start Mon Mar 30 2020 02:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46937 * 2 1 4 4 C 1.53001 * 109.47377 * 240.00530 * 2 1 3 5 5 H 1.09000 * 109.47053 * 299.99963 * 4 2 1 6 6 C 1.52993 * 109.47245 * 179.97438 * 4 2 1 7 7 N 1.46901 * 109.47087 * 59.99649 * 4 2 1 8 8 C 1.46905 * 110.99870 * 205.00123 * 7 4 2 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 4 10 10 H 1.09008 * 109.47260 * 304.99930 * 9 8 7 11 11 C 1.47199 * 109.47518 * 65.00105 * 9 8 7 12 12 N 5.85803 * 101.51800 * 286.68153 * 2 1 3 13 13 C 1.53002 * 109.47169 * 185.00340 * 9 8 7 14 14 C 1.50706 * 109.47407 * 174.99999 * 13 9 8 15 15 H 1.08003 * 119.99732 * 359.97438 * 14 13 9 16 16 C 1.37872 * 120.00126 * 179.97438 * 14 13 9 17 17 N 1.31519 * 119.99763 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00013 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47081 * 89.99867 * 18 16 14 20 20 H 1.48501 * 109.47441 * 209.99954 * 18 16 14 21 21 H 1.48504 * 109.47344 * 330.00116 * 18 16 14 22 22 N 1.46493 * 109.47304 * 120.00445 * 2 1 3 23 23 C 1.34949 * 126.03841 * 34.71003 * 22 2 1 24 24 C 1.35318 * 107.74742 * 179.84436 * 23 22 2 25 25 C 1.39871 * 107.91677 * 0.42597 * 24 23 22 26 26 N 1.30832 * 108.20678 * 359.73759 * 25 24 23 27 27 H 1.09000 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47460 * 299.99780 * 1 2 3 29 29 H 1.09002 * 109.46947 * 59.99865 * 1 2 3 30 30 H 1.09000 * 109.47161 * 300.00015 * 6 4 2 31 31 H 1.09006 * 109.47343 * 59.99957 * 6 4 2 32 32 H 1.09004 * 109.47587 * 179.97438 * 6 4 2 33 33 H 1.00901 * 111.00067 * 328.95298 * 7 4 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 8 7 4 35 35 H 1.08998 * 109.46961 * 60.00043 * 8 7 4 36 36 H 1.09002 * 109.46730 * 294.99743 * 13 9 8 37 37 H 1.08994 * 109.47589 * 54.99527 * 13 9 8 38 38 H 0.97002 * 119.99151 * 180.02562 * 17 16 14 39 39 H 1.07999 * 126.12648 * 0.02562 * 23 22 2 40 40 H 1.08000 * 126.04075 * 180.17000 * 24 23 22 41 41 H 1.08004 * 125.89734 * 179.71338 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6768 -1.7488 -1.2494 6 6 3.5700 -0.7205 -1.2496 7 7 1.5504 -0.0286 -2.4487 8 6 1.4876 -0.9436 -3.5962 9 6 0.9750 -0.1878 -4.8237 10 1 0.0194 0.2810 -4.5889 11 6 1.9492 0.8479 -5.2045 12 7 2.6997 1.6477 -5.4985 13 6 0.7911 -1.1666 -5.9852 14 6 0.1712 -0.4470 -7.1553 15 1 -0.0681 0.6034 -7.0780 16 6 -0.0905 -1.1294 -8.3243 17 7 -0.6319 -0.5015 -9.3452 18 14 0.3241 -2.9459 -8.4582 19 1 -0.8417 -3.7534 -8.0177 20 1 0.6507 -3.2766 -9.8686 21 1 1.4928 -3.2520 -7.5947 22 7 2.0184 -0.6907 1.1960 23 6 1.4373 -1.7526 1.7925 24 6 2.1966 -2.0929 2.8596 25 6 3.2735 -1.2025 2.9229 26 7 3.1677 -0.3615 1.9263 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.9330 0.3072 -1.2497 31 1 3.9338 -1.2342 -0.3596 32 1 3.9335 -1.2347 -2.1394 33 1 0.6527 0.3994 -2.2780 34 1 2.4831 -1.3373 -3.8018 35 1 0.8113 -1.7672 -3.3676 36 1 1.7609 -1.5688 -6.2784 37 1 0.1388 -1.9822 -5.6733 38 1 -0.8163 -0.9818 -10.1676 39 1 0.5305 -2.2448 1.4734 40 1 2.0030 -2.9056 3.5441 41 1 4.0568 -1.2080 3.6664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229570704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:39 Heat of formation + Delta-G solvation = 98.995646 kcal Electronic energy + Delta-G solvation = -20869.686394 eV Core-core repulsion = 17786.372239 eV Total energy + Delta-G solvation = -3083.314155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45894 -38.39250 -36.49764 -34.34363 -33.28153 -31.84948 -30.36236 -29.77306 -29.51695 -26.75293 -24.44702 -23.10478 -21.77953 -21.35555 -21.19748 -19.87450 -17.67107 -17.29156 -16.86784 -16.01420 -15.36199 -14.77097 -14.63584 -14.25212 -14.09505 -13.73041 -13.70839 -13.50226 -13.05469 -12.93995 -12.73038 -12.50546 -12.22664 -12.16101 -12.02413 -11.80759 -11.57403 -11.35633 -11.25025 -11.07236 -10.85011 -10.79010 -10.45890 -10.00852 -9.82945 -9.58301 -9.37222 -8.79528 -8.65970 -8.54534 -6.14522 -4.15522 1.70862 2.22896 2.66704 3.22103 3.31839 3.32298 3.66021 3.74634 4.01177 4.11943 4.34533 4.36807 4.58175 4.70434 4.74310 4.75875 5.01544 5.06528 5.20188 5.28725 5.34479 5.40967 5.43054 5.53786 5.55334 5.69130 5.71364 5.77249 5.81002 5.87154 6.15705 6.22031 6.24584 6.45482 6.78493 6.85841 6.88238 7.06847 7.25371 7.53794 7.59141 8.36320 8.51088 8.88938 9.45181 10.98558 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.003400 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.567322 B = 8233.971525 C = 8539.819419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.155 3.845 3 H 0.111 0.889 4 C 0.078 3.922 5 H 0.051 0.949 6 C -0.137 4.137 7 N -0.684 5.684 8 C 0.065 3.935 9 C 0.021 3.979 10 H 0.105 0.895 11 C 0.250 3.750 12 N -0.468 5.468 13 C -0.005 4.005 14 C -0.529 4.529 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.877 3.123 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.264 1.264 22 N -0.358 5.358 23 C 0.054 3.946 24 C -0.278 4.278 25 C 0.039 3.961 26 N -0.291 5.291 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.342 0.658 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.170 0.830 40 H 0.144 0.856 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -5.582 24.197 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.053 3.947 3 H 0.129 0.871 4 C -0.033 4.033 5 H 0.069 0.931 6 C -0.195 4.195 7 N -0.319 5.319 8 C -0.065 4.065 9 C -0.001 4.001 10 H 0.122 0.878 11 C -0.067 4.067 12 N -0.144 5.144 13 C -0.044 4.044 14 C -0.567 4.567 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.189 1.189 22 N -0.141 5.141 23 C -0.092 4.092 24 C -0.308 4.308 25 C -0.147 4.147 26 N -0.111 5.111 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.415 -3.054 22.675 23.134 hybrid contribution -1.345 -2.569 0.443 2.934 sum 2.070 -5.623 23.119 23.883 Atomic orbital electron populations 1.22283 0.92873 1.03588 1.04213 1.21434 0.94344 0.97808 0.81159 0.87086 1.21840 0.97250 0.95918 0.88274 0.93149 1.21745 0.93520 1.02872 1.01323 1.60600 1.33896 1.33689 1.03673 1.22166 1.01928 0.93541 0.88868 1.18939 0.93893 0.91818 0.95498 0.87760 1.28640 0.93357 0.93315 0.91384 1.80989 1.11481 1.11462 1.10470 1.19635 0.97902 0.94234 0.92609 1.21017 1.41249 0.98165 0.96226 0.90749 1.24993 0.94316 0.98256 0.95543 1.69908 1.42891 1.36682 1.03937 0.86821 0.79403 0.85690 0.77664 1.20057 1.21259 1.18870 1.48767 1.19155 1.24101 1.22088 1.22491 0.99897 0.91429 0.95401 1.21487 0.99340 1.06510 1.03423 1.23885 0.99361 0.94128 0.97370 1.77423 1.02746 1.23706 1.07274 0.91369 0.91003 0.89287 0.91748 0.92529 0.92442 0.83675 0.90264 0.93101 0.95623 0.94966 0.92525 0.81301 0.83780 0.80282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 8.59 37.16 0.32 -0.78 16 2 C 0.15 1.39 3.04 -67.93 -0.21 1.18 16 3 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.08 0.79 2.42 -67.72 -0.16 0.62 16 5 H 0.05 0.49 7.80 -51.93 -0.40 0.09 16 6 C -0.14 -1.62 9.23 37.15 0.34 -1.28 16 7 N -0.68 -7.69 6.01 -106.73 -0.64 -8.33 16 8 C 0.06 0.83 4.85 -3.82 -0.02 0.81 16 9 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 10 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 11 C 0.25 5.05 13.67 -20.78 -0.28 4.77 16 12 N -0.47 -10.51 18.53 42.13 0.78 -9.73 16 13 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 14 C -0.53 -13.97 9.15 -34.44 -0.32 -14.29 16 15 H 0.07 2.16 7.84 -52.48 -0.41 1.75 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 18 Si 0.88 20.34 27.47 -169.99 -4.67 15.67 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 22 N -0.36 -3.58 2.89 -54.87 -0.16 -3.74 16 23 C 0.05 0.46 10.59 -17.22 -0.18 0.27 16 24 C -0.28 -2.34 10.80 -40.01 -0.43 -2.77 16 25 C 0.04 0.36 12.02 -17.37 -0.21 0.16 16 26 N -0.29 -3.40 11.91 30.62 0.36 -3.04 16 27 H 0.07 0.37 7.15 -51.93 -0.37 0.00 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.51 6.21 -51.93 -0.32 0.19 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.69 7.04 -51.93 -0.37 0.32 16 32 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 33 H 0.34 3.24 6.17 -39.29 -0.24 2.99 16 34 H 0.08 1.08 7.43 -51.93 -0.39 0.70 16 35 H 0.05 0.56 8.05 -51.93 -0.42 0.14 16 36 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 37 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.17 0.95 7.26 -52.49 -0.38 0.57 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.18 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -32.84 341.37 -6.13 -38.97 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.16 Total: 0.55 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.56 Total: -9.50 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 1.12 Total: -50.84 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.84 -6.13 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229570704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.965 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds