Wall clock time and date at job start Mon Mar 30 2020 02:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46937 * 2 1 4 4 C 1.53001 * 109.47377 * 240.00530 * 2 1 3 5 5 H 1.09000 * 109.47053 * 299.99963 * 4 2 1 6 6 C 1.52993 * 109.47245 * 179.97438 * 4 2 1 7 7 N 1.46901 * 109.47087 * 59.99649 * 4 2 1 8 8 C 1.46905 * 110.99870 * 205.00123 * 7 4 2 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 4 10 10 H 1.09008 * 109.47260 * 304.99930 * 9 8 7 11 11 C 1.47199 * 109.47518 * 65.00105 * 9 8 7 12 12 N 5.85803 * 101.51800 * 286.68153 * 2 1 3 13 13 C 1.53002 * 109.47169 * 185.00340 * 9 8 7 14 14 C 1.50706 * 109.47407 * 174.99999 * 13 9 8 15 15 H 1.08003 * 119.99732 * 359.97438 * 14 13 9 16 16 C 1.37872 * 120.00126 * 179.97438 * 14 13 9 17 17 N 1.31519 * 119.99763 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00013 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47081 * 89.99867 * 18 16 14 20 20 H 1.48501 * 109.47441 * 209.99954 * 18 16 14 21 21 H 1.48504 * 109.47344 * 330.00116 * 18 16 14 22 22 N 1.46493 * 109.47304 * 120.00445 * 2 1 3 23 23 C 1.34949 * 126.03841 * 34.71003 * 22 2 1 24 24 C 1.35318 * 107.74742 * 179.84436 * 23 22 2 25 25 C 1.39871 * 107.91677 * 0.42597 * 24 23 22 26 26 N 1.30832 * 108.20678 * 359.73759 * 25 24 23 27 27 H 1.09000 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47460 * 299.99780 * 1 2 3 29 29 H 1.09002 * 109.46947 * 59.99865 * 1 2 3 30 30 H 1.09000 * 109.47161 * 300.00015 * 6 4 2 31 31 H 1.09006 * 109.47343 * 59.99957 * 6 4 2 32 32 H 1.09004 * 109.47587 * 179.97438 * 6 4 2 33 33 H 1.00901 * 111.00067 * 328.95298 * 7 4 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 8 7 4 35 35 H 1.08998 * 109.46961 * 60.00043 * 8 7 4 36 36 H 1.09002 * 109.46730 * 294.99743 * 13 9 8 37 37 H 1.08994 * 109.47589 * 54.99527 * 13 9 8 38 38 H 0.97002 * 119.99151 * 180.02562 * 17 16 14 39 39 H 1.07999 * 126.12648 * 0.02562 * 23 22 2 40 40 H 1.08000 * 126.04075 * 180.17000 * 24 23 22 41 41 H 1.08004 * 125.89734 * 179.71338 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6768 -1.7488 -1.2494 6 6 3.5700 -0.7205 -1.2496 7 7 1.5504 -0.0286 -2.4487 8 6 1.4876 -0.9436 -3.5962 9 6 0.9750 -0.1878 -4.8237 10 1 0.0194 0.2810 -4.5889 11 6 1.9492 0.8479 -5.2045 12 7 2.6997 1.6477 -5.4985 13 6 0.7911 -1.1666 -5.9852 14 6 0.1712 -0.4470 -7.1553 15 1 -0.0681 0.6034 -7.0780 16 6 -0.0905 -1.1294 -8.3243 17 7 -0.6319 -0.5015 -9.3452 18 14 0.3241 -2.9459 -8.4582 19 1 -0.8417 -3.7534 -8.0177 20 1 0.6507 -3.2766 -9.8686 21 1 1.4928 -3.2520 -7.5947 22 7 2.0184 -0.6907 1.1960 23 6 1.4373 -1.7526 1.7925 24 6 2.1966 -2.0929 2.8596 25 6 3.2735 -1.2025 2.9229 26 7 3.1677 -0.3615 1.9263 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.9330 0.3072 -1.2497 31 1 3.9338 -1.2342 -0.3596 32 1 3.9335 -1.2347 -2.1394 33 1 0.6527 0.3994 -2.2780 34 1 2.4831 -1.3373 -3.8018 35 1 0.8113 -1.7672 -3.3676 36 1 1.7609 -1.5688 -6.2784 37 1 0.1388 -1.9822 -5.6733 38 1 -0.8163 -0.9818 -10.1676 39 1 0.5305 -2.2448 1.4734 40 1 2.0030 -2.9056 3.5441 41 1 4.0568 -1.2080 3.6664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229570704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:38 Heat of formation + Delta-G solvation = 77.065745 kcal Electronic energy + Delta-G solvation = -20870.637346 eV Core-core repulsion = 17786.372239 eV Total energy + Delta-G solvation = -3084.265107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11507 -39.37218 -37.82264 -35.76161 -34.79541 -33.31929 -31.20946 -30.58044 -30.30331 -28.27681 -25.21733 -24.24202 -23.29395 -22.34241 -21.89531 -20.57247 -18.95969 -18.67867 -18.08027 -17.06059 -16.48379 -15.95782 -15.58584 -15.30890 -15.23940 -14.90672 -14.58072 -14.36865 -14.30271 -14.09184 -13.83737 -13.64609 -13.46327 -13.25843 -13.19971 -13.06190 -12.73601 -12.58475 -12.36041 -12.19226 -12.11490 -11.87873 -11.65219 -11.54504 -11.49866 -11.26871 -10.72248 -10.30573 -9.46681 -9.37520 -8.24026 -6.29517 1.06263 1.42414 1.46500 1.56015 1.59082 2.03460 2.07579 2.14296 2.41541 3.09750 3.13894 3.33481 3.46479 3.67250 4.02061 4.05704 4.09462 4.19823 4.32854 4.42068 4.42858 4.64418 4.69624 4.72471 4.76909 4.80750 4.87216 4.89789 4.97137 5.01254 5.18553 5.22988 5.23994 5.28422 5.46278 5.64252 5.81805 5.96458 6.22801 6.26898 6.47993 6.78626 6.87470 6.92471 7.35153 8.92944 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029082 B = 0.003400 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.567322 B = 8233.971525 C = 8539.819419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.157 3.843 3 H 0.091 0.909 4 C 0.088 3.912 5 H 0.066 0.934 6 C -0.131 4.131 7 N -0.695 5.695 8 C 0.077 3.923 9 C 0.026 3.974 10 H 0.123 0.877 11 C 0.261 3.739 12 N -0.518 5.518 13 C -0.003 4.003 14 C -0.530 4.530 15 H 0.030 0.970 16 C 0.002 3.998 17 N -0.955 5.955 18 Si 0.948 3.052 19 H -0.255 1.255 20 H -0.298 1.298 21 H -0.239 1.239 22 N -0.366 5.366 23 C 0.054 3.946 24 C -0.286 4.286 25 C 0.031 3.969 26 N -0.338 5.338 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.355 0.645 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.264 0.736 39 H 0.200 0.800 40 H 0.165 0.835 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -8.494 26.322 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.109 0.891 4 C -0.023 4.023 5 H 0.084 0.916 6 C -0.189 4.189 7 N -0.332 5.332 8 C -0.053 4.053 9 C 0.004 3.996 10 H 0.140 0.860 11 C -0.055 4.055 12 N -0.196 5.196 13 C -0.042 4.042 14 C -0.568 4.568 15 H 0.048 0.952 16 C -0.194 4.194 17 N -0.596 5.596 18 Si 0.771 3.229 19 H -0.179 1.179 20 H -0.225 1.225 21 H -0.162 1.162 22 N -0.149 5.149 23 C -0.092 4.092 24 C -0.316 4.316 25 C -0.154 4.154 26 N -0.160 5.160 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.177 0.823 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.217 0.783 40 H 0.183 0.817 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.505 -5.961 24.847 25.674 hybrid contribution -1.057 -1.562 -0.180 1.894 sum 1.449 -7.522 24.667 25.829 Atomic orbital electron populations 1.22275 0.90507 1.04888 1.04677 1.21385 0.96012 0.96537 0.80565 0.89064 1.21720 0.95644 0.96714 0.88198 0.91588 1.21674 0.95319 1.01305 1.00649 1.60438 1.35029 1.33897 1.03810 1.22008 1.02163 0.93755 0.87412 1.19083 0.94066 0.90512 0.95965 0.85978 1.29465 0.92878 0.93047 0.90092 1.80989 1.13408 1.13154 1.12012 1.19589 0.97672 0.95281 0.91699 1.21411 1.40370 0.96654 0.98357 0.95178 1.26041 0.94376 1.03886 0.95139 1.70095 1.45468 1.39089 1.04911 0.85696 0.80623 0.79148 0.77437 1.17889 1.22452 1.16202 1.48838 1.19019 1.24756 1.22288 1.23053 1.00535 0.90645 0.94975 1.21835 0.98920 1.06863 1.03937 1.24359 1.00150 0.93804 0.97135 1.77376 1.04369 1.25467 1.08741 0.89584 0.90903 0.88467 0.93779 0.93078 0.93095 0.82258 0.90982 0.89686 0.95805 0.91602 0.92705 0.78289 0.81717 0.78442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.59 71.98 0.62 -0.97 16 2 C 0.16 2.54 3.04 44.99 0.14 2.67 16 3 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.09 1.56 2.42 44.91 0.11 1.67 16 5 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 6 C -0.13 -3.03 9.23 71.98 0.66 -2.36 16 7 N -0.70 -13.79 6.01 -491.58 -2.95 -16.74 16 8 C 0.08 1.68 4.85 86.30 0.42 2.10 16 9 C 0.03 0.79 2.35 -12.60 -0.03 0.76 16 10 H 0.12 3.41 8.14 -2.38 -0.02 3.39 16 11 C 0.26 10.43 13.67 89.45 1.22 11.65 16 12 N -0.52 -23.63 18.53 20.00 0.37 -23.26 16 13 C 0.00 -0.13 3.49 29.85 0.10 -0.03 16 14 C -0.53 -27.91 9.15 25.60 0.23 -27.67 16 15 H 0.03 1.80 7.84 -2.91 -0.02 1.77 16 16 C 0.00 0.12 5.47 84.65 0.46 0.58 16 17 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 18 Si 0.95 40.70 27.47 68.60 1.88 42.59 16 19 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 22 N -0.37 -6.69 2.89 -327.50 -0.95 -7.63 16 23 C 0.05 0.75 10.59 83.54 0.88 1.64 16 24 C -0.29 -4.13 10.80 21.99 0.24 -3.90 16 25 C 0.03 0.55 12.02 85.24 1.02 1.57 16 26 N -0.34 -7.74 11.91 -57.02 -0.68 -8.42 16 27 H 0.09 0.54 7.15 -2.39 -0.02 0.53 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.78 6.21 -2.39 -0.01 0.77 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.22 7.04 -2.38 -0.02 1.20 16 32 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 33 H 0.35 5.58 6.17 -89.69 -0.55 5.03 16 34 H 0.07 1.73 7.43 -2.39 -0.02 1.72 16 35 H 0.09 1.37 8.05 -2.39 -0.02 1.35 16 36 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 37 H 0.07 2.17 7.57 -2.39 -0.02 2.16 16 38 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.20 1.35 7.26 -2.91 -0.02 1.33 16 40 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -74.62 341.37 4.48 -70.14 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.42 Total: 13.84 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 6.09 Total: -12.29 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.91 Total: -114.28 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.88 Total: 42.59 kcal Total: -74.62 4.48 -70.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229570704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.209 kcal (2) G-P(sol) polarization free energy of solvation -74.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds