Wall clock time and date at job start Mon Mar 30 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47165 * 2 1 4 4 C 1.38608 * 120.71526 * 269.72362 * 3 2 1 5 5 N 1.32277 * 119.19155 * 179.72150 * 4 3 2 6 6 C 1.32490 * 120.74179 * 0.56065 * 5 4 3 7 7 N 1.38410 * 119.21846 * 179.73250 * 6 5 4 8 8 C 1.46958 * 110.99910 * 123.77463 * 7 6 5 9 9 C 1.53055 * 109.36292 * 176.81003 * 8 7 6 10 10 N 1.46958 * 109.36017 * 58.40419 * 9 8 7 11 11 C 1.46902 * 110.99496 * 176.81153 * 10 9 8 12 12 C 1.50699 * 109.47444 * 58.98183 * 11 10 9 13 13 H 1.07996 * 119.99918 * 5.00212 * 12 11 10 14 14 C 1.37876 * 120.00178 * 185.01014 * 12 11 10 15 15 N 1.31518 * 119.99581 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00209 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46891 * 59.99335 * 16 14 12 18 18 H 1.48496 * 109.47178 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46869 * 300.00153 * 16 14 12 20 20 C 1.46958 * 110.88098 * 300.67505 * 10 9 8 21 21 C 1.46958 * 110.99675 * 359.97438 * 7 6 5 22 22 N 1.32496 * 121.56527 * 359.70560 * 6 5 4 23 23 C 1.32269 * 120.73888 * 0.02562 * 22 6 5 24 24 H 1.09006 * 109.47024 * 59.99778 * 1 2 3 25 25 H 1.09004 * 109.47054 * 300.00398 * 1 2 3 26 26 H 1.08991 * 109.47652 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46729 * 119.99680 * 2 1 3 28 28 H 1.08995 * 109.47032 * 239.99724 * 2 1 3 29 29 H 1.08000 * 120.40314 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.49221 * 296.78003 * 8 7 6 31 31 H 1.09001 * 109.48780 * 56.84795 * 8 7 6 32 32 H 1.09004 * 109.49002 * 298.43701 * 9 8 7 33 33 H 1.08998 * 109.50783 * 178.38264 * 9 8 7 34 34 H 1.09004 * 109.46949 * 178.97972 * 11 10 9 35 35 H 1.09001 * 109.47036 * 298.97197 * 11 10 9 36 36 H 0.97001 * 119.99564 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.49221 * 299.35657 * 20 10 9 38 38 H 1.09001 * 109.48780 * 179.28865 * 20 10 9 39 39 H 1.08999 * 109.49224 * 303.15496 * 21 7 6 40 40 H 1.08995 * 109.48876 * 63.20265 * 21 7 6 41 41 H 1.08008 * 120.40181 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2738 2.0864 -1.1916 5 7 2.7091 3.3350 -1.1565 6 6 2.9247 3.9448 -0.0002 7 7 3.3856 5.2499 -0.0002 8 6 2.4858 6.1262 0.7627 9 6 3.0703 7.5401 0.8056 10 7 3.2459 8.0365 -0.5664 11 6 3.7351 9.4216 -0.5664 12 6 5.0504 9.4899 0.1660 13 1 5.5197 8.5835 0.5186 14 6 5.6545 10.7096 0.3860 15 7 5.0830 11.8134 -0.0438 16 14 7.2845 10.7944 1.2944 17 1 8.3071 10.0165 0.5498 18 1 7.7196 12.2102 1.3994 19 1 7.1227 10.2234 2.6557 20 6 4.1457 7.1602 -1.3293 21 6 3.5613 5.7463 -1.3722 22 7 2.7091 3.3351 1.1562 23 6 2.2687 2.0883 1.1914 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 2.1046 1.5930 -2.1373 30 1 1.5081 6.1513 0.2814 31 1 2.3817 5.7448 1.7785 32 1 4.0358 7.5193 1.3112 33 1 2.3907 8.1986 1.3464 34 1 3.8735 9.7581 -1.5939 35 1 3.0082 10.0637 -0.0688 36 1 5.5081 12.6715 0.1106 37 1 5.1234 7.1351 -0.8480 38 1 4.2498 7.5416 -2.3451 39 1 4.2412 5.0879 -1.9129 40 1 2.5959 5.7667 -1.8779 41 1 2.0944 1.5967 2.1372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259342129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:39 Heat of formation + Delta-G solvation = 65.916713 kcal Electronic energy + Delta-G solvation = -21285.508818 eV Core-core repulsion = 18200.760253 eV Total energy + Delta-G solvation = -3084.748565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27684 -38.69280 -35.80087 -34.19340 -33.77044 -32.34699 -30.44033 -29.75235 -27.61011 -25.32095 -24.92171 -23.81722 -22.70096 -21.99519 -21.32402 -19.29716 -17.74757 -17.68463 -16.35191 -15.50844 -15.15680 -15.06100 -14.55802 -14.41053 -14.24755 -14.00489 -13.92427 -13.56330 -13.24597 -13.15976 -12.76595 -12.27091 -11.95469 -11.89792 -11.45952 -11.10391 -10.94980 -10.92734 -10.84789 -10.70689 -10.58042 -10.47011 -10.13988 -9.94077 -9.78655 -9.56897 -9.10883 -8.41937 -8.16434 -7.21124 -6.01901 -4.10878 0.90635 1.09716 3.29248 3.31041 3.35456 3.38904 3.73953 4.14855 4.42430 4.48925 4.55549 4.58507 4.76210 5.01684 5.02505 5.14796 5.26589 5.28582 5.43957 5.48248 5.54342 5.55132 5.72870 5.82228 5.84969 5.90138 5.96079 6.05841 6.20994 6.27225 6.57744 6.71644 6.76253 6.86545 6.89410 7.26472 7.36511 7.52593 7.90299 8.02002 8.19315 8.24136 8.29264 8.99138 9.56135 11.03321 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.040602 B = 0.003487 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.457613 B = 8027.054911 C = 8199.655235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.066 4.066 3 C -0.237 4.237 4 C 0.176 3.824 5 N -0.549 5.549 6 C 0.496 3.504 7 N -0.457 5.457 8 C 0.073 3.927 9 C 0.063 3.937 10 N -0.545 5.545 11 C 0.188 3.812 12 C -0.551 4.551 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.059 3.941 21 C 0.075 3.925 22 N -0.530 5.530 23 C 0.176 3.824 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.163 0.837 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 -22.125 -0.376 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.243 4.243 4 C 0.008 3.992 5 N -0.268 5.268 6 C 0.141 3.859 7 N -0.176 5.176 8 C -0.053 4.053 9 C -0.066 4.066 10 N -0.269 5.269 11 C 0.062 3.938 12 C -0.590 4.590 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.070 4.070 21 C -0.052 4.052 22 N -0.247 5.247 23 C 0.008 3.992 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.180 0.820 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.946 -20.807 -0.386 22.276 hybrid contribution 0.965 -0.746 0.588 1.354 sum -6.981 -21.553 0.202 22.656 Atomic orbital electron populations 1.21784 0.94771 1.01770 1.02267 1.20275 0.95965 0.91168 1.03090 1.21427 1.07538 0.99706 0.95615 1.22931 0.89335 0.88959 0.98009 1.68446 1.17399 1.11410 1.29560 1.21254 0.87490 0.92976 0.84154 1.58579 1.43645 0.97942 1.17450 1.22388 0.92628 0.92647 0.97658 1.21981 1.00788 0.91596 0.92185 1.62745 1.47274 1.04971 1.11909 1.19738 0.94028 0.82717 0.97281 1.21729 1.06941 0.92864 1.37439 0.92354 1.24955 0.97532 0.95707 0.95522 1.69938 1.39052 0.97902 1.46121 0.86697 0.84191 0.76937 0.80457 1.20258 1.21239 1.20204 1.22050 0.95697 0.89976 0.99265 1.22221 1.01436 0.96281 0.85239 1.68057 1.16669 1.10905 1.29088 1.22949 0.89431 0.88809 0.98059 0.92597 0.92588 0.92249 0.90817 0.90832 0.82008 0.93671 0.89362 0.92756 0.90423 0.95315 0.94619 0.92758 0.93309 0.90524 0.90064 0.92652 0.81835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.07 -0.41 6.11 -27.88 -0.17 -0.58 16 3 C -0.24 -2.26 5.17 -104.35 -0.54 -2.80 16 4 C 0.18 1.94 11.00 -17.22 -0.19 1.75 16 5 N -0.55 -8.13 8.70 -13.93 -0.12 -8.25 16 6 C 0.50 8.12 7.17 -322.80 -2.31 5.80 16 7 N -0.46 -8.13 4.77 -175.23 -0.84 -8.97 16 8 C 0.07 1.26 5.46 -3.76 -0.02 1.24 16 9 C 0.06 1.27 5.24 -3.76 -0.02 1.25 16 10 N -0.54 -11.83 4.92 -235.90 -1.16 -12.99 16 11 C 0.19 4.83 5.14 -4.98 -0.03 4.81 16 12 C -0.55 -15.17 7.66 -34.44 -0.26 -15.44 16 13 H 0.06 1.61 5.82 -52.49 -0.31 1.31 16 14 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.06 1.18 5.32 -3.76 -0.02 1.16 16 21 C 0.08 1.31 4.77 -3.76 -0.02 1.29 16 22 N -0.53 -8.01 9.72 -13.93 -0.14 -8.14 16 23 C 0.18 1.96 11.00 -17.23 -0.19 1.77 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 28 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 29 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.45 7.64 -51.93 -0.40 1.06 16 32 H 0.05 1.21 6.62 -51.93 -0.34 0.86 16 33 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.05 1.07 6.78 -51.93 -0.35 0.72 16 38 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 39 H 0.08 1.35 7.80 -51.93 -0.41 0.94 16 40 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 41 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -31.11 330.04 -11.49 -42.59 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.42 Total: -1.86 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -3.50 Total: 1.53 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.52 Total: -63.88 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.11 -11.49 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259342129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.510 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds