Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47165 * 2 1 4 4 C 1.38608 * 120.71526 * 269.72362 * 3 2 1 5 5 N 1.32277 * 119.19155 * 179.72150 * 4 3 2 6 6 C 1.32490 * 120.74179 * 0.56065 * 5 4 3 7 7 N 1.38410 * 119.21846 * 179.73250 * 6 5 4 8 8 C 1.46958 * 110.99910 * 123.77463 * 7 6 5 9 9 C 1.53055 * 109.36292 * 176.81003 * 8 7 6 10 10 N 1.46958 * 109.36017 * 58.40419 * 9 8 7 11 11 C 1.46902 * 110.99496 * 176.81153 * 10 9 8 12 12 C 1.50699 * 109.47444 * 58.98183 * 11 10 9 13 13 H 1.07996 * 119.99918 * 5.00212 * 12 11 10 14 14 C 1.37876 * 120.00178 * 185.01014 * 12 11 10 15 15 N 1.31518 * 119.99581 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00209 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46891 * 59.99335 * 16 14 12 18 18 H 1.48496 * 109.47178 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46869 * 300.00153 * 16 14 12 20 20 C 1.46958 * 110.88098 * 300.67505 * 10 9 8 21 21 C 1.46958 * 110.99675 * 359.97438 * 7 6 5 22 22 N 1.32496 * 121.56527 * 359.70560 * 6 5 4 23 23 C 1.32269 * 120.73888 * 0.02562 * 22 6 5 24 24 H 1.09006 * 109.47024 * 59.99778 * 1 2 3 25 25 H 1.09004 * 109.47054 * 300.00398 * 1 2 3 26 26 H 1.08991 * 109.47652 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46729 * 119.99680 * 2 1 3 28 28 H 1.08995 * 109.47032 * 239.99724 * 2 1 3 29 29 H 1.08000 * 120.40314 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.49221 * 296.78003 * 8 7 6 31 31 H 1.09001 * 109.48780 * 56.84795 * 8 7 6 32 32 H 1.09004 * 109.49002 * 298.43701 * 9 8 7 33 33 H 1.08998 * 109.50783 * 178.38264 * 9 8 7 34 34 H 1.09004 * 109.46949 * 178.97972 * 11 10 9 35 35 H 1.09001 * 109.47036 * 298.97197 * 11 10 9 36 36 H 0.97001 * 119.99564 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.49221 * 299.35657 * 20 10 9 38 38 H 1.09001 * 109.48780 * 179.28865 * 20 10 9 39 39 H 1.08999 * 109.49224 * 303.15496 * 21 7 6 40 40 H 1.08995 * 109.48876 * 63.20265 * 21 7 6 41 41 H 1.08008 * 120.40181 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2738 2.0864 -1.1916 5 7 2.7091 3.3350 -1.1565 6 6 2.9247 3.9448 -0.0002 7 7 3.3856 5.2499 -0.0002 8 6 2.4858 6.1262 0.7627 9 6 3.0703 7.5401 0.8056 10 7 3.2459 8.0365 -0.5664 11 6 3.7351 9.4216 -0.5664 12 6 5.0504 9.4899 0.1660 13 1 5.5197 8.5835 0.5186 14 6 5.6545 10.7096 0.3860 15 7 5.0830 11.8134 -0.0438 16 14 7.2845 10.7944 1.2944 17 1 8.3071 10.0165 0.5498 18 1 7.7196 12.2102 1.3994 19 1 7.1227 10.2234 2.6557 20 6 4.1457 7.1602 -1.3293 21 6 3.5613 5.7463 -1.3722 22 7 2.7091 3.3351 1.1562 23 6 2.2687 2.0883 1.1914 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 2.1046 1.5930 -2.1373 30 1 1.5081 6.1513 0.2814 31 1 2.3817 5.7448 1.7785 32 1 4.0358 7.5193 1.3112 33 1 2.3907 8.1986 1.3464 34 1 3.8735 9.7581 -1.5939 35 1 3.0082 10.0637 -0.0688 36 1 5.5081 12.6715 0.1106 37 1 5.1234 7.1351 -0.8480 38 1 4.2498 7.5416 -2.3451 39 1 4.2412 5.0879 -1.9129 40 1 2.5959 5.7667 -1.8779 41 1 2.0944 1.5967 2.1372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259342129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = 46.216795 kcal Electronic energy + Delta-G solvation = -21286.363071 eV Core-core repulsion = 18200.760253 eV Total energy + Delta-G solvation = -3085.602818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.30840 -40.12036 -37.18287 -35.26852 -34.77533 -34.29082 -31.95226 -30.85180 -29.16187 -27.01962 -25.96363 -24.90109 -24.10872 -23.54790 -22.33583 -20.90736 -18.99874 -18.69801 -18.36069 -16.90006 -16.50568 -16.12136 -15.92000 -15.86906 -15.57412 -15.36619 -14.90784 -14.73854 -14.61188 -14.34036 -13.88666 -13.58967 -13.53344 -12.97825 -12.86241 -12.80594 -12.49761 -12.32813 -12.26624 -11.95735 -11.90771 -11.84341 -11.81695 -11.60917 -11.51662 -10.93354 -10.60997 -10.09781 -9.30218 -9.09411 -8.16878 -6.35577 -0.05329 0.19983 1.36870 1.37979 1.46418 2.14578 2.37100 2.75494 3.08514 3.20260 3.29505 3.61948 3.75769 3.88666 3.97291 4.00893 4.08457 4.22861 4.31735 4.43781 4.55437 4.55546 4.60576 4.76834 4.79700 4.84293 4.97049 5.02789 5.12208 5.15828 5.19570 5.30767 5.31730 5.33246 5.46910 5.59028 5.71087 5.76075 6.00551 6.18807 6.30519 6.41997 6.83581 7.16883 7.35604 8.86061 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.040602 B = 0.003487 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.457613 B = 8027.054911 C = 8199.655235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.212 4.212 4 C 0.163 3.837 5 N -0.568 5.568 6 C 0.471 3.529 7 N -0.476 5.476 8 C 0.089 3.911 9 C 0.068 3.932 10 N -0.543 5.543 11 C 0.202 3.798 12 C -0.558 4.558 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.925 5.925 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.271 1.271 20 C 0.063 3.937 21 C 0.094 3.906 22 N -0.554 5.554 23 C 0.164 3.836 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.195 0.805 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.008 0.992 35 H 0.012 0.988 36 H 0.266 0.734 37 H 0.025 0.975 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -25.207 0.002 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.218 4.218 4 C -0.004 4.004 5 N -0.287 5.287 6 C 0.116 3.884 7 N -0.196 5.196 8 C -0.037 4.037 9 C -0.061 4.061 10 N -0.267 5.267 11 C 0.075 3.925 12 C -0.597 4.597 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.564 5.564 16 Si 0.781 3.219 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.196 1.196 20 C -0.066 4.066 21 C -0.033 4.033 22 N -0.272 5.272 23 C -0.003 4.003 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.212 0.788 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.026 0.974 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.154 -23.952 -0.009 25.302 hybrid contribution 0.921 0.025 0.452 1.027 sum -7.233 -23.928 0.444 25.001 Atomic orbital electron populations 1.21772 0.94294 1.02711 1.01693 1.20389 0.96112 0.88791 1.04833 1.21828 1.04522 1.00975 0.94446 1.23569 0.88687 0.88019 1.00087 1.68389 1.18040 1.13196 1.29117 1.21072 0.89738 0.92427 0.85184 1.58549 1.44824 0.99053 1.17153 1.22141 0.92349 0.90805 0.98393 1.21939 0.99711 0.93605 0.90800 1.62671 1.47254 1.03540 1.13205 1.19402 0.92971 0.84750 0.95367 1.21927 1.07555 0.92831 1.37393 0.92781 1.25772 1.01068 0.95333 0.96340 1.70050 1.40667 0.98444 1.47248 0.85649 0.79841 0.77218 0.79235 1.19702 1.20468 1.19620 1.22038 0.94401 0.91449 0.98665 1.21949 1.01233 0.94299 0.85801 1.68012 1.17504 1.12766 1.28903 1.23584 0.88771 0.87809 1.00152 0.93222 0.93179 0.90603 0.89130 0.89126 0.78839 0.93548 0.88437 0.95160 0.90467 0.97395 0.97008 0.92520 0.95623 0.90306 0.89162 0.92707 0.78715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 71.98 0.71 -0.46 16 2 C -0.06 -0.51 6.11 29.85 0.18 -0.32 16 3 C -0.21 -3.38 5.17 -19.69 -0.10 -3.49 16 4 C 0.16 3.17 11.00 84.71 0.93 4.10 16 5 N -0.57 -16.03 8.70 -197.98 -1.72 -17.75 16 6 C 0.47 15.05 7.17 261.48 1.88 16.93 16 7 N -0.48 -16.94 4.77 -708.30 -3.38 -20.32 16 8 C 0.09 3.13 5.46 86.31 0.47 3.60 16 9 C 0.07 2.82 5.24 86.31 0.45 3.27 16 10 N -0.54 -24.39 4.92 -900.24 -4.43 -28.81 16 11 C 0.20 10.82 5.14 85.56 0.44 11.26 16 12 C -0.56 -31.62 7.66 25.60 0.20 -31.43 16 13 H 0.05 3.07 5.82 -2.91 -0.02 3.05 16 14 C 0.01 0.83 5.46 84.65 0.46 1.29 16 15 N -0.92 -55.52 13.29 21.45 0.28 -55.23 16 16 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 C 0.06 2.60 5.32 86.31 0.46 3.05 16 21 C 0.09 3.30 4.77 86.31 0.41 3.71 16 22 N -0.55 -16.04 9.72 -197.99 -1.92 -17.97 16 23 C 0.16 3.23 11.00 84.71 0.93 4.16 16 24 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.09 0.51 8.10 -2.39 -0.02 0.49 16 28 H 0.09 0.50 8.10 -2.39 -0.02 0.48 16 29 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 3.21 7.64 -2.39 -0.02 3.19 16 32 H 0.03 1.39 6.62 -2.38 -0.02 1.38 16 33 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.01 0.45 8.12 -2.38 -0.02 0.43 16 35 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.03 1.17 6.78 -2.39 -0.02 1.15 16 38 H 0.08 3.13 8.12 -2.39 -0.02 3.11 16 39 H 0.09 2.97 7.80 -2.39 -0.02 2.96 16 40 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 41 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -68.54 330.04 -0.71 -69.25 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.00 Total: 8.26 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 7.42 Total: 15.69 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -11.17 Total: -140.09 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.54 -0.71 -69.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259342129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.467 kcal (2) G-P(sol) polarization free energy of solvation -68.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds