Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.52999 * 109.47054 * 119.99594 * 2 1 3 5 5 C 1.50694 * 109.47087 * 183.69181 * 4 2 1 6 6 H 1.07998 * 120.00140 * 5.06759 * 5 4 2 7 7 C 1.37886 * 119.99897 * 185.07118 * 5 4 2 8 8 N 1.31507 * 119.99941 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99703 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47095 * 90.00284 * 9 7 5 11 11 H 1.48501 * 109.47111 * 209.99721 * 9 7 5 12 12 H 1.48490 * 109.47283 * 330.00313 * 9 7 5 13 13 N 1.46899 * 109.47022 * 240.00115 * 2 1 3 14 14 C 1.46947 * 111.00245 * 72.33473 * 13 2 1 15 15 C 1.53053 * 109.36756 * 176.80951 * 14 13 2 16 16 N 1.46959 * 109.36451 * 58.39486 * 15 14 13 17 17 C 1.38399 * 111.00368 * 176.81247 * 16 15 14 18 18 N 1.32495 * 119.21528 * 123.52785 * 17 16 15 19 19 C 1.32283 * 120.73506 * 179.71948 * 18 17 16 20 20 C 1.38599 * 119.19975 * 0.55249 * 19 18 17 21 21 C 1.38606 * 118.56031 * 359.72380 * 20 19 18 22 22 N 1.32283 * 119.19497 * 0.02562 * 21 20 19 23 23 C 1.46955 * 110.88261 * 300.68738 * 16 15 14 24 24 C 1.46949 * 110.99802 * 308.52627 * 13 2 1 25 25 H 1.09002 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46914 * 59.99990 * 1 2 3 27 27 H 1.08992 * 109.47415 * 300.00251 * 1 2 3 28 28 H 1.09002 * 109.47335 * 303.69399 * 4 2 1 29 29 H 1.09002 * 109.46507 * 63.69144 * 4 2 1 30 30 H 0.97003 * 120.00142 * 180.02562 * 8 7 5 31 31 H 1.09009 * 109.48937 * 296.77540 * 14 13 2 32 32 H 1.09000 * 109.49767 * 56.83747 * 14 13 2 33 33 H 1.08999 * 109.48752 * 298.43541 * 15 14 13 34 34 H 1.08998 * 109.49386 * 178.36102 * 15 14 13 35 35 H 1.08009 * 120.39426 * 180.25337 * 19 18 17 36 36 H 1.08000 * 120.72236 * 179.70978 * 20 19 18 37 37 H 1.07996 * 120.40244 * 179.97438 * 21 20 19 38 38 H 1.09009 * 109.48855 * 299.34899 * 23 16 15 39 39 H 1.09001 * 109.49162 * 179.29072 * 23 16 15 40 40 H 1.08994 * 109.49508 * 303.15675 * 24 13 2 41 41 H 1.09001 * 109.48893 * 63.22883 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5442 -0.6424 1.2959 6 1 4.0776 -0.0607 0.5587 7 6 4.2395 -1.3131 2.2797 8 7 5.5521 -1.2448 2.3201 9 14 3.3168 -2.3187 3.5552 10 1 3.1563 -3.7117 3.0659 11 1 4.0820 -2.3263 4.8278 12 1 1.9785 -1.7179 3.7857 13 7 2.0197 -0.6925 -1.1994 14 6 1.8027 0.1219 -2.4032 15 6 2.3964 -0.5976 -3.6166 16 7 1.7663 -1.9178 -3.7567 17 6 2.2276 -2.5703 -4.8867 18 7 2.7790 -3.7685 -4.7618 19 6 3.2250 -4.4214 -5.8223 20 6 3.1201 -3.8322 -7.0725 21 6 2.5430 -2.5755 -7.1665 22 7 2.1127 -1.9792 -6.0669 23 6 1.9832 -2.7322 -2.5528 24 6 1.3895 -2.0126 -1.3394 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.6236 -0.2469 2.1380 29 1 1.7316 -1.7661 1.2168 30 1 6.0414 -1.7170 3.0120 31 1 0.7333 0.2690 -2.5550 32 1 2.2892 1.0896 -2.2803 33 1 3.4704 -0.7204 -3.4769 34 1 2.2111 -0.0090 -4.5151 35 1 3.6698 -5.3997 -5.7146 36 1 3.4804 -4.3412 -7.9543 37 1 2.4467 -2.0887 -8.1257 38 1 3.0526 -2.8792 -2.4011 39 1 1.4967 -3.6999 -2.6758 40 1 1.5749 -2.6012 -0.4411 41 1 0.3155 -1.8899 -1.4791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276295325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = 82.221144 kcal Electronic energy + Delta-G solvation = -21820.282455 eV Core-core repulsion = 18736.240903 eV Total energy + Delta-G solvation = -3084.041552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25418 -39.11179 -36.36429 -33.82723 -32.92827 -31.75772 -30.73157 -30.08960 -27.82225 -26.06913 -24.94772 -23.21510 -23.03460 -22.40706 -20.18732 -18.81342 -17.82367 -17.42853 -16.54948 -15.91527 -15.49249 -15.22659 -14.64845 -14.48403 -14.43386 -13.96366 -13.79788 -13.62850 -13.42411 -12.89415 -12.43760 -12.04154 -11.93128 -11.62422 -11.49192 -11.21006 -11.00556 -10.91620 -10.76561 -10.65252 -10.51681 -10.18985 -10.02966 -9.70142 -9.52158 -9.22563 -9.02018 -8.40696 -8.37108 -7.53846 -5.89620 -3.83443 0.87719 1.04074 3.18440 3.36674 3.44585 3.46866 3.72169 4.09254 4.43606 4.49226 4.55607 4.66894 4.97642 5.03611 5.14796 5.33723 5.38608 5.45305 5.54749 5.64616 5.68095 5.72867 5.76665 5.87458 5.90989 6.05895 6.08846 6.15142 6.28725 6.38771 6.45901 6.52110 6.72679 6.76452 6.79484 7.14095 7.23796 7.31790 7.74559 7.80583 7.96300 8.11328 8.72810 9.22065 9.73437 11.24544 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.004655 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.654161 B = 6013.868363 C = 6620.167877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.489 4.489 6 H 0.077 0.923 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.510 5.510 14 C 0.055 3.945 15 C 0.073 3.927 16 N -0.462 5.462 17 C 0.500 3.500 18 N -0.549 5.549 19 C 0.174 3.826 20 C -0.271 4.271 21 C 0.172 3.828 22 N -0.534 5.534 23 C 0.074 3.926 24 C 0.055 3.945 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.166 0.834 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 -3.442 -17.537 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.094 0.906 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.095 0.905 7 C -0.137 4.137 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.234 5.234 14 C -0.074 4.074 15 C -0.053 4.053 16 N -0.181 5.181 17 C 0.144 3.856 18 N -0.268 5.268 19 C 0.006 3.994 20 C -0.295 4.295 21 C 0.004 3.996 22 N -0.253 5.253 23 C -0.053 4.053 24 C -0.074 4.074 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.096 -2.957 -16.508 18.623 hybrid contribution -0.258 -1.205 -0.160 1.243 sum -8.354 -4.162 -16.668 19.104 Atomic orbital electron populations 1.22554 0.99477 1.01507 1.01023 1.21682 0.90037 0.98403 0.90994 0.90600 1.19660 0.97998 0.94975 0.91611 1.21017 0.89151 1.29979 1.12586 0.90502 1.24998 0.94633 0.96588 0.97512 1.69909 1.06136 1.44176 1.34634 0.86908 0.80330 0.81107 0.81622 1.20538 1.21678 1.19344 1.62276 1.57539 1.02149 1.01419 1.22176 0.98801 0.96892 0.89522 1.22280 0.97198 0.86388 0.99408 1.58646 1.52619 1.05378 1.01455 1.21193 0.86690 0.87501 0.90220 1.68476 1.13479 1.10618 1.34274 1.23090 0.90416 0.98345 0.87502 1.22680 1.07477 0.99010 1.00356 1.23061 0.88856 0.91101 0.96595 1.68040 1.21277 1.37606 0.98353 1.22188 1.02000 0.95292 0.85847 1.22250 0.95877 0.91745 0.97511 0.92733 0.93666 0.92485 0.96510 0.96917 0.93098 0.94387 0.89820 0.92652 0.89101 0.81660 0.83834 0.81582 0.91462 0.89760 0.88873 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 8.39 37.16 0.31 -2.69 16 2 C 0.10 1.87 2.26 -67.71 -0.15 1.72 16 3 H 0.08 1.50 7.98 -51.93 -0.41 1.08 16 4 C 0.00 -0.12 3.46 -27.89 -0.10 -0.21 16 5 C -0.49 -13.76 9.36 -34.44 -0.32 -14.08 16 6 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.35 13.96 55.43 0.77 -27.57 16 9 Si 0.87 21.87 27.37 -169.99 -4.65 17.21 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.45 6.69 56.52 0.38 -6.07 16 13 N -0.51 -9.57 4.32 -226.50 -0.98 -10.55 16 14 C 0.05 0.87 5.36 -3.77 -0.02 0.85 16 15 C 0.07 1.13 5.46 -3.76 -0.02 1.11 16 16 N -0.46 -7.38 4.77 -175.23 -0.84 -8.21 16 17 C 0.50 7.69 7.17 -322.82 -2.32 5.38 16 18 N -0.55 -8.02 8.70 -13.93 -0.12 -8.14 16 19 C 0.17 1.87 11.30 -17.22 -0.19 1.67 16 20 C -0.27 -2.37 10.16 -39.31 -0.40 -2.77 16 21 C 0.17 1.73 11.30 -17.22 -0.19 1.53 16 22 N -0.53 -7.42 9.72 -13.93 -0.14 -7.55 16 23 C 0.07 1.23 4.77 -3.76 -0.02 1.21 16 24 C 0.05 0.95 4.70 -3.77 -0.02 0.94 16 25 H 0.05 0.86 6.39 -51.93 -0.33 0.53 16 26 H 0.04 0.66 6.85 -51.93 -0.36 0.30 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.02 0.40 7.55 -51.93 -0.39 0.00 16 29 H 0.01 0.30 5.57 -51.93 -0.29 0.01 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.04 0.58 6.85 -51.92 -0.36 0.22 16 32 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.28 7.64 -51.93 -0.40 0.89 16 35 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.07 1.26 8.03 -51.92 -0.42 0.85 16 39 H 0.08 1.33 7.81 -51.93 -0.41 0.92 16 40 H 0.09 1.76 6.37 -51.93 -0.33 1.43 16 41 H 0.04 0.60 6.40 -51.93 -0.33 0.27 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -32.96 321.14 -10.78 -43.74 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.13 Total: -0.13 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.54 Total: -3.63 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -1.30 Total: -62.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.65 Total: 17.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.96 -10.78 -43.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276295325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.964 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds