Wall clock time and date at job start Mon Mar 30 2020 02:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.52999 * 109.47054 * 119.99594 * 2 1 3 5 5 C 1.50694 * 109.47087 * 183.69181 * 4 2 1 6 6 H 1.07998 * 120.00140 * 5.06759 * 5 4 2 7 7 C 1.37886 * 119.99897 * 185.07118 * 5 4 2 8 8 N 1.31507 * 119.99941 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99703 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47095 * 90.00284 * 9 7 5 11 11 H 1.48501 * 109.47111 * 209.99721 * 9 7 5 12 12 H 1.48490 * 109.47283 * 330.00313 * 9 7 5 13 13 N 1.46899 * 109.47022 * 240.00115 * 2 1 3 14 14 C 1.46947 * 111.00245 * 72.33473 * 13 2 1 15 15 C 1.53053 * 109.36756 * 176.80951 * 14 13 2 16 16 N 1.46959 * 109.36451 * 58.39486 * 15 14 13 17 17 C 1.38399 * 111.00368 * 176.81247 * 16 15 14 18 18 N 1.32495 * 119.21528 * 123.52785 * 17 16 15 19 19 C 1.32283 * 120.73506 * 179.71948 * 18 17 16 20 20 C 1.38599 * 119.19975 * 0.55249 * 19 18 17 21 21 C 1.38606 * 118.56031 * 359.72380 * 20 19 18 22 22 N 1.32283 * 119.19497 * 0.02562 * 21 20 19 23 23 C 1.46955 * 110.88261 * 300.68738 * 16 15 14 24 24 C 1.46949 * 110.99802 * 308.52627 * 13 2 1 25 25 H 1.09002 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46914 * 59.99990 * 1 2 3 27 27 H 1.08992 * 109.47415 * 300.00251 * 1 2 3 28 28 H 1.09002 * 109.47335 * 303.69399 * 4 2 1 29 29 H 1.09002 * 109.46507 * 63.69144 * 4 2 1 30 30 H 0.97003 * 120.00142 * 180.02562 * 8 7 5 31 31 H 1.09009 * 109.48937 * 296.77540 * 14 13 2 32 32 H 1.09000 * 109.49767 * 56.83747 * 14 13 2 33 33 H 1.08999 * 109.48752 * 298.43541 * 15 14 13 34 34 H 1.08998 * 109.49386 * 178.36102 * 15 14 13 35 35 H 1.08009 * 120.39426 * 180.25337 * 19 18 17 36 36 H 1.08000 * 120.72236 * 179.70978 * 20 19 18 37 37 H 1.07996 * 120.40244 * 179.97438 * 21 20 19 38 38 H 1.09009 * 109.48855 * 299.34899 * 23 16 15 39 39 H 1.09001 * 109.49162 * 179.29072 * 23 16 15 40 40 H 1.08994 * 109.49508 * 303.15675 * 24 13 2 41 41 H 1.09001 * 109.48893 * 63.22883 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5442 -0.6424 1.2959 6 1 4.0776 -0.0607 0.5587 7 6 4.2395 -1.3131 2.2797 8 7 5.5521 -1.2448 2.3201 9 14 3.3168 -2.3187 3.5552 10 1 3.1563 -3.7117 3.0659 11 1 4.0820 -2.3263 4.8278 12 1 1.9785 -1.7179 3.7857 13 7 2.0197 -0.6925 -1.1994 14 6 1.8027 0.1219 -2.4032 15 6 2.3964 -0.5976 -3.6166 16 7 1.7663 -1.9178 -3.7567 17 6 2.2276 -2.5703 -4.8867 18 7 2.7790 -3.7685 -4.7618 19 6 3.2250 -4.4214 -5.8223 20 6 3.1201 -3.8322 -7.0725 21 6 2.5430 -2.5755 -7.1665 22 7 2.1127 -1.9792 -6.0669 23 6 1.9832 -2.7322 -2.5528 24 6 1.3895 -2.0126 -1.3394 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.6236 -0.2469 2.1380 29 1 1.7316 -1.7661 1.2168 30 1 6.0414 -1.7170 3.0120 31 1 0.7333 0.2690 -2.5550 32 1 2.2892 1.0896 -2.2803 33 1 3.4704 -0.7204 -3.4769 34 1 2.2111 -0.0090 -4.5151 35 1 3.6698 -5.3997 -5.7146 36 1 3.4804 -4.3412 -7.9543 37 1 2.4467 -2.0887 -8.1257 38 1 3.0526 -2.8792 -2.4011 39 1 1.4967 -3.6999 -2.6758 40 1 1.5749 -2.6012 -0.4411 41 1 0.3155 -1.8899 -1.4791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276295325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:16 Heat of formation + Delta-G solvation = 59.924341 kcal Electronic energy + Delta-G solvation = -21821.249317 eV Core-core repulsion = 18736.240903 eV Total energy + Delta-G solvation = -3085.008414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.23297 -40.39367 -37.68119 -34.87026 -34.75053 -33.24706 -32.01429 -31.36372 -29.57155 -27.31923 -25.92324 -24.80525 -24.21608 -23.77472 -21.66679 -20.22246 -18.89834 -18.75683 -18.40684 -16.94181 -16.57069 -16.45461 -16.34607 -15.74908 -15.53120 -15.50688 -15.09757 -14.83324 -14.56739 -14.32786 -14.11367 -13.80049 -13.44944 -13.07097 -12.88238 -12.68561 -12.33632 -12.22731 -12.06186 -11.92290 -11.84053 -11.69592 -11.58157 -11.35235 -11.15976 -11.05286 -10.64942 -10.15960 -9.46138 -8.93527 -8.15769 -6.14137 -0.01917 0.20994 1.38430 1.39604 1.50731 2.13515 2.43505 2.80913 3.02229 3.21590 3.24373 3.60109 3.82384 3.89543 3.98049 4.14459 4.24084 4.28967 4.32411 4.33844 4.37987 4.47477 4.57802 4.58675 4.76241 4.81911 4.86962 4.89090 5.00037 5.01990 5.14823 5.22257 5.29772 5.34842 5.50901 5.56360 5.73903 5.77173 6.26262 6.34933 6.35945 6.53295 6.93274 7.16289 7.46258 9.01981 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.004655 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.654161 B = 6013.868363 C = 6620.167877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 H 0.066 0.934 4 C -0.002 4.002 5 C -0.486 4.486 6 H 0.032 0.968 7 C -0.003 4.003 8 N -0.960 5.960 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.540 5.540 14 C 0.061 3.939 15 C 0.083 3.917 16 N -0.465 5.465 17 C 0.472 3.528 18 N -0.581 5.581 19 C 0.155 3.845 20 C -0.245 4.245 21 C 0.161 3.839 22 N -0.554 5.554 23 C 0.089 3.911 24 C 0.061 3.939 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.105 0.895 35 H 0.195 0.805 36 H 0.188 0.812 37 H 0.206 0.794 38 H 0.034 0.966 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 -4.338 -19.205 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 H 0.084 0.916 4 C -0.040 4.040 5 C -0.525 4.525 6 H 0.051 0.949 7 C -0.197 4.197 8 N -0.603 5.603 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.169 1.169 13 N -0.264 5.264 14 C -0.067 4.067 15 C -0.043 4.043 16 N -0.184 5.184 17 C 0.116 3.884 18 N -0.301 5.301 19 C -0.011 4.011 20 C -0.268 4.268 21 C -0.006 4.006 22 N -0.273 5.273 23 C -0.039 4.039 24 C -0.067 4.067 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.123 0.877 35 H 0.212 0.788 36 H 0.205 0.795 37 H 0.222 0.778 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.236 -3.863 -18.225 21.257 hybrid contribution 0.536 -0.942 0.133 1.092 sum -9.700 -4.805 -18.092 21.083 Atomic orbital electron populations 1.22401 0.96235 1.02224 1.02472 1.21496 0.92517 0.97150 0.89662 0.91600 1.19607 0.94532 0.95849 0.93999 1.21268 0.91815 1.28454 1.10954 0.94922 1.25925 0.95411 0.98204 1.00178 1.70085 1.08211 1.45992 1.36003 0.85779 0.79740 0.79478 0.78311 1.19783 1.21642 1.16924 1.62155 1.58796 1.03112 1.02355 1.22162 0.99712 0.96501 0.88340 1.22160 0.95503 0.86915 0.99761 1.58688 1.53252 1.05144 1.01363 1.21190 0.88548 0.88251 0.90453 1.68422 1.14391 1.10842 1.36453 1.23738 0.90224 0.99461 0.87650 1.23148 1.04635 0.98109 1.00931 1.23841 0.87993 0.91844 0.96880 1.68033 1.22099 1.38410 0.98750 1.21921 0.99771 0.95786 0.86427 1.22157 0.96714 0.90924 0.96933 0.92314 0.91797 0.91475 0.95999 0.96447 0.93152 0.92820 0.89598 0.95432 0.87689 0.78839 0.79469 0.77760 0.94794 0.89136 0.90797 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.18 8.39 71.98 0.60 -4.58 16 2 C 0.10 3.82 2.26 44.92 0.10 3.93 16 3 H 0.07 2.62 7.98 -2.39 -0.02 2.60 16 4 C 0.00 -0.11 3.46 29.85 0.10 -0.01 16 5 C -0.49 -28.25 9.36 25.60 0.24 -28.01 16 6 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 7 C 0.00 -0.16 5.47 84.66 0.46 0.31 16 8 N -0.96 -62.18 13.96 21.45 0.30 -61.88 16 9 Si 0.94 45.40 27.37 68.60 1.88 47.28 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.25 -10.85 6.69 99.48 0.67 -10.18 16 13 N -0.54 -20.52 4.32 -870.50 -3.76 -24.28 16 14 C 0.06 1.92 5.36 86.31 0.46 2.38 16 15 C 0.08 2.61 5.46 86.31 0.47 3.08 16 16 N -0.46 -14.96 4.77 -708.30 -3.38 -18.34 16 17 C 0.47 14.46 7.17 261.49 1.88 16.34 16 18 N -0.58 -16.89 8.70 -197.98 -1.72 -18.61 16 19 C 0.15 3.03 11.30 84.71 0.96 3.99 16 20 C -0.25 -3.44 10.16 22.44 0.23 -3.21 16 21 C 0.16 2.77 11.30 84.71 0.96 3.73 16 22 N -0.55 -14.69 9.72 -197.99 -1.92 -16.62 16 23 C 0.09 3.04 4.77 86.31 0.41 3.45 16 24 C 0.06 2.13 4.70 86.31 0.41 2.54 16 25 H 0.06 1.70 6.39 -2.39 -0.02 1.69 16 26 H 0.06 1.67 6.85 -2.38 -0.02 1.65 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.02 1.00 7.55 -2.39 -0.02 0.98 16 29 H 0.02 0.79 5.57 -2.39 -0.01 0.78 16 30 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 31 H 0.05 1.53 6.85 -2.38 -0.02 1.52 16 32 H 0.09 2.61 8.05 -2.39 -0.02 2.59 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 2.95 7.64 -2.39 -0.02 2.94 16 35 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 37 H 0.21 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 39 H 0.09 2.92 7.81 -2.39 -0.02 2.90 16 40 H 0.07 2.83 6.37 -2.39 -0.02 2.82 16 41 H 0.05 1.69 6.40 -2.39 -0.02 1.68 16 Total: -1.00 -75.06 321.14 -0.36 -75.41 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.97 Total: 13.11 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 7.28 Total: 3.93 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -10.49 Total: -139.74 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -75.06 -0.36 -75.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276295325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.339 kcal (2) G-P(sol) polarization free energy of solvation -75.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds