Wall clock time and date at job start Mon Mar 30 2020 02:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.38993 * 110.99720 * 176.81052 * 16 15 14 18 18 C 1.39333 * 120.09826 * 303.79969 * 17 16 15 19 19 N 1.31924 * 119.89133 * 179.97438 * 18 17 16 20 20 C 1.32271 * 120.08743 * 359.97438 * 19 18 17 21 21 C 1.38165 * 120.19025 * 359.97438 * 20 19 18 22 22 N 1.32249 * 120.10947 * 359.78815 * 21 20 19 23 23 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 24 24 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 25 25 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 26 26 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 28 28 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 29 29 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 30 30 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 32 32 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 33 33 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 34 34 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 35 35 H 1.08002 * 120.05635 * 359.95817 * 18 17 16 36 36 H 1.07993 * 119.90677 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.93802 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.49134 * 299.35228 * 23 16 15 39 39 H 1.09004 * 109.48915 * 179.28485 * 23 16 15 40 40 H 1.09006 * 109.48668 * 303.15646 * 24 13 2 41 41 H 1.09001 * 109.48849 * 63.19565 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2124 -2.7081 4.8206 18 6 1.8565 -4.0345 5.0558 19 7 2.2990 -4.6526 6.1340 20 6 3.0796 -4.0150 6.9906 21 6 3.4355 -2.7000 6.7602 22 7 3.0001 -2.0744 5.6795 23 6 2.2435 -0.6698 3.6373 24 6 1.6485 0.0394 2.4186 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2055 30 1 4.0609 -2.2444 -4.0348 31 1 0.4379 -2.0705 1.3249 32 1 1.8233 -2.6003 0.3403 33 1 3.2060 -2.8138 2.3763 34 1 1.7324 -3.8020 2.5210 35 1 1.2193 -4.5557 4.3568 36 1 3.4406 -4.5240 7.8720 37 1 4.0734 -2.1834 7.4621 38 1 3.3307 -0.6748 3.5603 39 1 1.9453 -0.1450 4.5449 40 1 2.0366 1.0566 2.3644 41 1 0.5626 0.0688 2.5087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276362290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:07 Heat of formation + Delta-G solvation = 71.292710 kcal Electronic energy + Delta-G solvation = -21774.056143 eV Core-core repulsion = 18689.540699 eV Total energy + Delta-G solvation = -3084.515445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34421 -39.18526 -36.51593 -34.12385 -32.95353 -31.57327 -30.76045 -29.67966 -27.36153 -26.05468 -25.05125 -23.36096 -23.08851 -22.62542 -20.28087 -18.74283 -17.60687 -17.52746 -16.72493 -16.19335 -15.38995 -15.31461 -14.65947 -14.55050 -14.46246 -14.08638 -13.88607 -13.59746 -13.06509 -12.93246 -12.16289 -12.04464 -11.82651 -11.69288 -11.57545 -11.28364 -11.18778 -11.09839 -10.80295 -10.63384 -10.47139 -10.36360 -10.04981 -9.92828 -9.19578 -9.18495 -9.01881 -8.29632 -8.27595 -7.55110 -5.92405 -3.90476 0.71669 1.05923 3.31357 3.36775 3.43166 3.47319 3.67475 4.17872 4.20367 4.43760 4.47793 4.53972 4.92960 5.06725 5.09550 5.28573 5.33566 5.44266 5.49628 5.54996 5.61919 5.68435 5.77526 5.91142 5.95367 6.00401 6.08572 6.15172 6.28608 6.36915 6.48223 6.60145 6.73696 6.92885 6.94002 7.28833 7.47870 7.62103 7.72547 7.83460 7.95390 8.08850 8.53895 9.15863 9.71766 11.19382 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.004689 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.032573 B = 5969.831967 C = 6657.262709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.513 5.513 14 C 0.056 3.944 15 C 0.062 3.938 16 N -0.472 5.472 17 C 0.276 3.724 18 C 0.037 3.963 19 N -0.420 5.420 20 C 0.002 3.998 21 C 0.080 3.920 22 N -0.480 5.480 23 C 0.071 3.929 24 C 0.049 3.951 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 -1.549 17.371 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.090 0.910 4 C -0.008 4.008 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.237 5.237 14 C -0.072 4.072 15 C -0.063 4.063 16 N -0.189 5.189 17 C 0.040 3.960 18 C -0.128 4.128 19 N -0.134 5.134 20 C -0.157 4.157 21 C -0.080 4.080 22 N -0.200 5.200 23 C -0.056 4.056 24 C -0.080 4.080 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.105 -1.602 17.128 17.686 hybrid contribution 0.878 0.078 0.006 0.881 sum -3.227 -1.524 17.134 17.502 Atomic orbital electron populations 1.22514 0.99615 1.01376 1.00790 1.21915 0.90156 0.98491 0.91497 0.91048 1.19232 0.96383 0.95317 0.89912 1.21174 0.91767 1.33100 1.07039 0.92156 1.24993 0.97956 0.95862 0.95951 1.69957 1.35214 1.36861 1.12338 0.86648 0.86471 0.78347 0.76804 1.20988 1.21574 1.20021 1.62312 1.58920 1.01213 1.01221 1.22215 0.96928 0.90801 0.97288 1.22474 1.00434 0.96754 0.86648 1.59327 1.53990 1.04744 1.00855 1.21027 0.89991 0.91552 0.93384 1.23295 1.00960 0.91980 0.96608 1.68331 1.06894 1.36673 1.01503 1.23484 0.98285 0.93896 1.00076 1.23579 0.96981 0.93343 0.94095 1.68454 1.09009 1.38162 1.04366 1.22101 0.99321 0.85713 0.98435 1.22240 0.98070 0.97777 0.89869 0.92497 0.92875 0.93976 0.96229 0.96220 0.93284 0.94386 0.87822 0.92194 0.89849 0.81365 0.81734 0.81605 0.92112 0.90010 0.90262 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.49 37.15 0.32 -2.73 16 2 C 0.09 1.70 2.30 -67.71 -0.16 1.55 16 3 H 0.07 1.43 8.11 -51.92 -0.42 1.01 16 4 C 0.03 0.70 4.27 -27.88 -0.12 0.58 16 5 C -0.49 -13.43 8.84 -34.44 -0.30 -13.73 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.51 -9.29 4.41 -226.49 -1.00 -10.29 16 14 C 0.06 0.94 4.82 -3.77 -0.02 0.92 16 15 C 0.06 0.91 5.37 -3.77 -0.02 0.89 16 16 N -0.47 -6.68 4.74 -172.91 -0.82 -7.50 16 17 C 0.28 3.76 6.40 -154.74 -0.99 2.77 16 18 C 0.04 0.47 10.37 -17.10 -0.18 0.29 16 19 N -0.42 -5.19 10.49 -12.88 -0.14 -5.32 16 20 C 0.00 0.02 11.21 -17.39 -0.19 -0.18 16 21 C 0.08 0.83 11.21 -17.40 -0.20 0.63 16 22 N -0.48 -6.39 8.89 -12.24 -0.11 -6.50 16 23 C 0.07 1.03 4.79 -3.77 -0.02 1.02 16 24 C 0.05 0.75 5.25 -3.77 -0.02 0.73 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.87 6.45 -51.92 -0.34 0.54 16 27 H 0.04 0.62 6.59 -51.93 -0.34 0.28 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.50 6.11 -51.93 -0.32 0.19 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.04 0.61 6.46 -51.93 -0.34 0.27 16 32 H 0.10 1.99 6.07 -51.93 -0.32 1.68 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.02 6.81 -51.93 -0.35 0.67 16 35 H 0.17 1.80 7.19 -52.49 -0.38 1.42 16 36 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.08 1.12 7.84 -51.93 -0.41 0.71 16 40 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 41 H 0.04 0.54 6.60 -51.93 -0.34 0.20 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -30.80 322.48 -9.52 -40.33 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.04 Total: -0.54 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.99 Total: -5.91 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -1.33 Total: -55.54 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.80 -9.52 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276362290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.620 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds