Wall clock time and date at job start Mon Mar 30 2020 02:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 N 1.46904 * 109.47162 * 119.99452 * 2 1 3 14 14 C 1.46960 * 110.99744 * 58.80696 * 13 2 1 15 15 C 1.53050 * 109.36512 * 176.80976 * 14 13 2 16 16 N 1.46960 * 109.36484 * 58.39776 * 15 14 13 17 17 C 1.38993 * 110.99720 * 176.81052 * 16 15 14 18 18 C 1.39333 * 120.09826 * 303.79969 * 17 16 15 19 19 N 1.31924 * 119.89133 * 179.97438 * 18 17 16 20 20 C 1.32271 * 120.08743 * 359.97438 * 19 18 17 21 21 C 1.38165 * 120.19025 * 359.97438 * 20 19 18 22 22 N 1.32249 * 120.10947 * 359.78815 * 21 20 19 23 23 C 1.46951 * 110.87860 * 300.68066 * 16 15 14 24 24 C 1.46947 * 111.00539 * 295.00479 * 13 2 1 25 25 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 26 26 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 28 28 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 29 29 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 30 30 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.48599 * 296.77974 * 14 13 2 32 32 H 1.09000 * 109.49267 * 56.83572 * 14 13 2 33 33 H 1.08995 * 109.48592 * 298.42880 * 15 14 13 34 34 H 1.09001 * 109.50299 * 178.37643 * 15 14 13 35 35 H 1.08002 * 120.05635 * 359.95817 * 18 17 16 36 36 H 1.07993 * 119.90677 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.93802 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.49134 * 299.35228 * 23 16 15 39 39 H 1.09004 * 109.48915 * 179.28485 * 23 16 15 40 40 H 1.09006 * 109.48668 * 303.15646 * 24 13 2 41 41 H 1.09001 * 109.48849 * 63.19565 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2994 9 14 6.0922 -1.0621 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0702 -3.8551 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6924 1.1995 14 6 1.5252 -2.0755 1.2479 15 6 2.1202 -2.7848 2.4667 16 7 1.7490 -2.0528 3.6858 17 6 2.2124 -2.7081 4.8206 18 6 1.8565 -4.0345 5.0558 19 7 2.2990 -4.6526 6.1340 20 6 3.0796 -4.0150 6.9906 21 6 3.4355 -2.7000 6.7602 22 7 3.0001 -2.0744 5.6795 23 6 2.2435 -0.6698 3.6373 24 6 1.6485 0.0394 2.4186 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2055 30 1 4.0609 -2.2444 -4.0348 31 1 0.4379 -2.0705 1.3249 32 1 1.8233 -2.6003 0.3403 33 1 3.2060 -2.8138 2.3763 34 1 1.7324 -3.8020 2.5210 35 1 1.2193 -4.5557 4.3568 36 1 3.4406 -4.5240 7.8720 37 1 4.0734 -2.1834 7.4621 38 1 3.3307 -0.6748 3.5603 39 1 1.9453 -0.1450 4.5449 40 1 2.0366 1.0566 2.3644 41 1 0.5626 0.0688 2.5087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276362290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:06 Heat of formation + Delta-G solvation = 50.090774 kcal Electronic energy + Delta-G solvation = -21774.975528 eV Core-core repulsion = 18689.540699 eV Total energy + Delta-G solvation = -3085.434829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28135 -40.42415 -37.80288 -35.18321 -34.77640 -32.99904 -31.97695 -30.87302 -29.17636 -27.24714 -26.07601 -25.07538 -24.26423 -23.83177 -21.68556 -20.14994 -18.64092 -18.47828 -18.31739 -17.59108 -16.73776 -16.56174 -16.31461 -15.78624 -15.54397 -15.36853 -15.13514 -14.82591 -14.55920 -13.99488 -13.74624 -13.65977 -13.27269 -13.04430 -12.96051 -12.68459 -12.47077 -12.42160 -12.33426 -12.24597 -12.03444 -11.91177 -11.57840 -11.10300 -11.06223 -10.92928 -10.46757 -10.08394 -9.29053 -8.94558 -8.09831 -6.13945 -0.15061 0.16080 1.40861 1.41469 1.52096 2.31852 2.46807 2.78448 3.06334 3.26857 3.30325 3.41157 3.56276 3.85620 4.01215 4.13015 4.26098 4.29754 4.30711 4.36667 4.40306 4.47426 4.57530 4.59571 4.61480 4.80156 4.88098 4.94725 5.01282 5.08161 5.20975 5.25533 5.31752 5.50067 5.52118 5.71651 5.91011 5.92308 6.31098 6.37970 6.40368 6.51275 6.84380 6.99958 7.51895 9.01920 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019589 B = 0.004689 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.032573 B = 5969.831967 C = 6657.262709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.066 0.934 4 C 0.035 3.965 5 C -0.499 4.499 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.951 3.049 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.534 5.534 14 C 0.062 3.938 15 C 0.072 3.928 16 N -0.470 5.470 17 C 0.253 3.747 18 C 0.030 3.970 19 N -0.440 5.440 20 C 0.013 3.987 21 C 0.079 3.921 22 N -0.501 5.501 23 C 0.082 3.918 24 C 0.055 3.945 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.065 0.935 28 H -0.007 1.007 29 H 0.003 0.997 30 H 0.258 0.742 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.106 0.894 35 H 0.179 0.821 36 H 0.203 0.797 37 H 0.203 0.797 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 -1.515 19.912 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.084 0.916 4 C -0.002 4.002 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.580 5.580 9 Si 0.777 3.223 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.193 1.193 13 N -0.258 5.258 14 C -0.066 4.066 15 C -0.054 4.054 16 N -0.188 5.188 17 C 0.019 3.981 18 C -0.134 4.134 19 N -0.154 5.154 20 C -0.147 4.147 21 C -0.081 4.081 22 N -0.221 5.221 23 C -0.045 4.045 24 C -0.073 4.073 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.011 0.989 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.125 0.875 35 H 0.196 0.804 36 H 0.220 0.780 37 H 0.220 0.780 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.798 -1.567 19.676 20.101 hybrid contribution 0.833 0.032 -0.644 1.053 sum -2.965 -1.535 19.032 19.323 Atomic orbital electron populations 1.22370 0.97071 1.01731 1.02000 1.21608 0.92125 0.97327 0.90172 0.91619 1.19083 0.95008 0.94651 0.91469 1.21476 0.93353 1.32334 1.06563 0.92675 1.25765 1.02379 0.95745 0.95784 1.70076 1.36893 1.37968 1.13015 0.85661 0.81246 0.78499 0.76865 1.20624 1.21175 1.19275 1.62197 1.59857 1.01970 1.01775 1.22072 0.97584 0.90041 0.96916 1.22323 0.98788 0.97807 0.86444 1.59346 1.54361 1.04343 1.00760 1.21033 0.91360 0.92213 0.93473 1.23437 1.01179 0.91640 0.97104 1.68395 1.07835 1.37231 1.01953 1.24159 0.96398 0.93899 1.00237 1.24221 0.96602 0.93719 0.93583 1.68428 1.09295 1.39098 1.05317 1.21955 0.97915 0.86305 0.98370 1.22250 0.98726 0.97737 0.88624 0.92426 0.92928 0.91562 0.98886 0.97922 0.93283 0.93233 0.91048 0.94615 0.87547 0.80364 0.78023 0.78036 0.94195 0.88893 0.89692 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 8.49 71.98 0.61 -4.96 16 2 C 0.10 3.77 2.30 44.91 0.10 3.87 16 3 H 0.07 2.64 8.11 -2.38 -0.02 2.62 16 4 C 0.03 1.77 4.27 29.85 0.13 1.89 16 5 C -0.50 -27.85 8.84 25.60 0.23 -27.63 16 6 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 9 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.53 -19.37 4.41 -870.48 -3.84 -23.21 16 14 C 0.06 2.11 4.82 86.31 0.42 2.52 16 15 C 0.07 2.11 5.37 86.31 0.46 2.58 16 16 N -0.47 -12.90 4.74 -700.97 -3.32 -16.22 16 17 C 0.25 6.59 6.40 133.04 0.85 7.45 16 18 C 0.03 0.71 10.37 84.94 0.88 1.59 16 19 N -0.44 -9.91 10.49 -194.67 -2.04 -11.95 16 20 C 0.01 0.21 11.21 84.61 0.95 1.16 16 21 C 0.08 1.39 11.21 84.61 0.95 2.34 16 22 N -0.50 -12.46 8.89 -192.65 -1.71 -14.18 16 23 C 0.08 2.30 4.79 86.31 0.41 2.71 16 24 C 0.05 1.60 5.25 86.31 0.45 2.06 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.69 6.45 -2.38 -0.02 1.68 16 27 H 0.07 1.82 6.59 -2.39 -0.02 1.81 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.00 0.14 6.11 -2.39 -0.01 0.12 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.05 1.55 6.46 -2.39 -0.02 1.54 16 32 H 0.07 2.87 6.07 -2.39 -0.01 2.86 16 33 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 2.56 6.81 -2.39 -0.02 2.54 16 35 H 0.18 3.60 7.19 -2.91 -0.02 3.58 16 36 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.20 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.04 1.28 8.05 -2.39 -0.02 1.26 16 39 H 0.09 2.40 7.84 -2.38 -0.02 2.38 16 40 H 0.08 2.37 8.12 -2.38 -0.02 2.35 16 41 H 0.05 1.30 6.60 -2.39 -0.02 1.28 16 Total: -1.00 -67.35 322.48 -0.68 -68.03 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.02 Total: 10.59 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 6.91 Total: -3.98 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -10.63 Total: -121.97 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.35 -0.68 -68.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276362290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.124 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds