Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.53004 * 109.47021 * 119.99948 * 2 1 3 5 5 C 1.50698 * 109.47386 * 183.68836 * 4 2 1 6 6 H 1.08002 * 119.99731 * 5.07268 * 5 4 2 7 7 C 1.37871 * 120.00144 * 185.06718 * 5 4 2 8 8 N 1.31516 * 120.00268 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99970 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46924 * 90.00136 * 9 7 5 11 11 H 1.48501 * 109.47441 * 209.99733 * 9 7 5 12 12 H 1.48499 * 109.47507 * 329.99964 * 9 7 5 13 13 N 1.46905 * 109.47278 * 239.99942 * 2 1 3 14 14 C 1.46960 * 110.99908 * 308.53136 * 13 2 1 15 15 C 1.53044 * 109.36200 * 183.19234 * 14 13 2 16 16 N 1.46962 * 109.36281 * 301.59756 * 15 14 13 17 17 C 1.39003 * 110.99998 * 183.19571 * 16 15 14 18 18 C 1.39341 * 120.09443 * 180.02562 * 17 16 15 19 19 N 1.31918 * 119.88605 * 180.02562 * 18 17 16 20 20 C 1.32268 * 120.08824 * 0.02562 * 19 18 17 21 21 C 1.38153 * 120.19827 * 359.97438 * 20 19 18 22 22 N 1.32252 * 120.10389 * 359.97438 * 21 20 19 23 23 C 1.46948 * 110.87913 * 59.32262 * 16 15 14 24 24 C 1.46950 * 110.99825 * 72.33275 * 13 2 1 25 25 H 1.08993 * 109.47019 * 300.00079 * 1 2 3 26 26 H 1.09004 * 109.46802 * 59.99905 * 1 2 3 27 27 H 1.09004 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47200 * 303.69236 * 4 2 1 29 29 H 1.09002 * 109.47104 * 63.68980 * 4 2 1 30 30 H 0.96998 * 120.00237 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.48767 * 63.22092 * 14 13 2 32 32 H 1.09000 * 109.48655 * 303.15391 * 14 13 2 33 33 H 1.09001 * 109.49182 * 181.63547 * 15 14 13 34 34 H 1.08998 * 109.49612 * 61.56178 * 15 14 13 35 35 H 1.07996 * 120.05160 * 0.04108 * 18 17 16 36 36 H 1.08008 * 119.89987 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.95060 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.49028 * 60.65003 * 23 16 15 39 39 H 1.09010 * 109.48918 * 180.71300 * 23 16 15 40 40 H 1.09001 * 109.49085 * 296.77543 * 24 13 2 41 41 H 1.09004 * 109.49152 * 56.82337 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5442 -0.6426 1.2959 6 1 4.0776 -0.0609 0.5587 7 6 4.2394 -1.3133 2.2797 8 7 5.5521 -1.2443 2.3207 9 14 3.3168 -2.3200 3.5543 10 1 3.1574 -3.7127 3.0644 11 1 4.0815 -2.3276 4.8273 12 1 1.9781 -1.7201 3.7847 13 7 2.0197 -0.6925 -1.1995 14 6 1.3895 -2.0127 -1.3395 15 6 1.9833 -2.7323 -2.5528 16 7 1.7662 -1.9178 -3.7567 17 6 2.2296 -2.5731 -4.8916 18 6 2.1180 -1.9685 -6.1420 19 7 2.5586 -2.5943 -7.2165 20 6 3.1050 -3.7940 -7.1078 21 6 3.2174 -4.3968 -5.8698 22 7 2.7792 -3.7759 -4.7874 23 6 2.3964 -0.5977 -3.6165 24 6 1.8027 0.1219 -2.4032 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6236 -0.2470 2.1381 29 1 1.7316 -1.7663 1.2168 30 1 6.0412 -1.7164 3.0126 31 1 0.3155 -1.8900 -1.4791 32 1 1.5748 -2.6013 -0.4410 33 1 1.4967 -3.6999 -2.6758 34 1 3.0526 -2.8792 -2.4011 35 1 1.6718 -0.9890 -6.2313 36 1 3.4643 -4.3038 -7.9895 37 1 3.6646 -5.3762 -5.7856 38 1 3.4705 -0.7204 -3.4769 39 1 2.2111 -0.0090 -4.5151 40 1 0.7334 0.2689 -2.5550 41 1 2.2890 1.0897 -2.2801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276362294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = 75.403200 kcal Electronic energy + Delta-G solvation = -21805.223001 eV Core-core repulsion = 18720.885800 eV Total energy + Delta-G solvation = -3084.337200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.34350 -39.22811 -36.57769 -34.14998 -32.87493 -31.62422 -30.89143 -29.78178 -27.85156 -26.10304 -25.11538 -23.30839 -23.04067 -22.44597 -20.24516 -18.82637 -17.63804 -17.48388 -16.74245 -16.57911 -15.54440 -15.20834 -14.72569 -14.51771 -14.46915 -14.07556 -13.92359 -13.64459 -12.97645 -12.94222 -12.49009 -12.11449 -12.00345 -11.83229 -11.63929 -11.42628 -11.30374 -11.14772 -10.79546 -10.70834 -10.58522 -10.15030 -10.00442 -9.73803 -9.55921 -9.18469 -9.04706 -8.43351 -8.28763 -7.59606 -5.92317 -3.86433 0.71886 1.06825 3.30833 3.34492 3.42628 3.44501 3.67882 4.18314 4.20649 4.36036 4.46646 4.53068 4.90734 5.05833 5.06990 5.22374 5.31485 5.40165 5.44070 5.48548 5.61009 5.64261 5.68224 5.81173 5.85100 5.96132 6.02240 6.05402 6.23842 6.33627 6.40459 6.47021 6.64571 6.74843 6.92333 7.10951 7.26545 7.29740 7.68899 7.73916 7.75839 7.92624 8.69625 9.18897 9.70664 11.21794 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.004618 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.299581 B = 6061.174141 C = 6666.028894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.490 4.490 6 H 0.077 0.923 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.510 5.510 14 C 0.054 3.946 15 C 0.069 3.931 16 N -0.472 5.472 17 C 0.276 3.724 18 C 0.035 3.965 19 N -0.421 5.421 20 C 0.002 3.998 21 C 0.083 3.917 22 N -0.477 5.477 23 C 0.063 3.937 24 C 0.055 3.945 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.037 0.963 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -2.427 -15.706 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.011 4.011 3 H 0.094 0.906 4 C -0.042 4.042 5 C -0.528 4.528 6 H 0.095 0.905 7 C -0.137 4.137 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.233 5.233 14 C -0.074 4.074 15 C -0.058 4.058 16 N -0.189 5.189 17 C 0.040 3.960 18 C -0.131 4.131 19 N -0.135 5.135 20 C -0.157 4.157 21 C -0.078 4.078 22 N -0.197 5.197 23 C -0.063 4.063 24 C -0.074 4.074 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.185 0.815 36 H 0.183 0.817 37 H 0.185 0.815 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.505 -2.444 -15.528 17.872 hybrid contribution -0.541 -0.771 0.734 1.194 sum -9.046 -3.214 -14.794 17.635 Atomic orbital electron populations 1.22553 0.99455 1.01512 1.01030 1.21684 0.90038 0.98394 0.90984 0.90591 1.19662 0.98016 0.94968 0.91600 1.21006 0.89131 1.30042 1.12632 0.90517 1.24996 0.94636 0.96574 0.97505 1.69908 1.06139 1.44129 1.34631 0.86910 0.80326 0.81105 0.81635 1.20542 1.21644 1.19345 1.62273 1.57573 1.02138 1.01355 1.22244 0.95838 0.91679 0.97649 1.22163 1.01853 0.95425 0.86339 1.59324 1.52164 1.05086 1.02373 1.21021 0.90615 0.91349 0.92985 1.23254 1.00814 1.01609 0.87389 1.68315 1.05786 1.08009 1.31363 1.23485 1.00414 0.92932 0.98895 1.23610 0.95267 1.00259 0.88653 1.68478 1.09333 1.09357 1.32501 1.22402 0.97971 0.86729 0.99189 1.22156 0.98742 0.96900 0.89593 0.92459 0.93685 0.92729 0.96502 0.96930 0.93067 0.94523 0.89001 0.89872 0.91620 0.81492 0.81697 0.81514 0.92162 0.89899 0.94374 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 8.39 37.16 0.31 -2.57 16 2 C 0.10 1.82 2.26 -67.71 -0.15 1.66 16 3 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 4 C -0.01 -0.11 3.46 -27.88 -0.10 -0.21 16 5 C -0.49 -13.61 9.36 -34.44 -0.32 -13.94 16 6 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.14 13.96 55.43 0.77 -27.37 16 9 Si 0.87 21.70 27.37 -169.99 -4.65 17.05 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.39 6.69 56.52 0.38 -6.01 16 13 N -0.51 -9.14 4.32 -226.49 -0.98 -10.11 16 14 C 0.05 0.91 4.70 -3.77 -0.02 0.89 16 15 C 0.07 1.09 4.80 -3.77 -0.02 1.07 16 16 N -0.47 -6.64 4.74 -172.90 -0.82 -7.46 16 17 C 0.28 3.77 6.40 -154.73 -0.99 2.78 16 18 C 0.04 0.42 10.38 -17.10 -0.18 0.25 16 19 N -0.42 -5.09 10.49 -12.88 -0.14 -5.22 16 20 C 0.00 0.02 11.21 -17.39 -0.19 -0.18 16 21 C 0.08 0.88 11.21 -17.40 -0.20 0.69 16 22 N -0.48 -6.64 8.89 -12.24 -0.11 -6.75 16 23 C 0.06 0.83 5.37 -3.77 -0.02 0.81 16 24 C 0.05 0.79 5.36 -3.77 -0.02 0.77 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.62 6.85 -51.93 -0.36 0.26 16 27 H 0.05 0.84 6.39 -51.93 -0.33 0.50 16 28 H 0.02 0.39 7.55 -51.93 -0.39 0.00 16 29 H 0.01 0.29 5.57 -51.93 -0.29 0.00 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 32 H 0.09 1.70 6.37 -51.93 -0.33 1.37 16 33 H 0.08 1.26 7.84 -51.93 -0.41 0.86 16 34 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 35 H 0.17 1.65 7.18 -52.49 -0.38 1.27 16 36 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.86 6.81 -51.92 -0.35 0.50 16 40 H 0.04 0.52 6.85 -51.93 -0.36 0.16 16 41 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -32.19 319.63 -9.14 -41.33 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.04 Total: -0.02 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.99 Total: -6.26 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -1.27 Total: -56.91 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.65 Total: 17.05 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.19 -9.14 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276362294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.737 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds