Wall clock time and date at job start Mon Mar 30 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47141 * 2 1 4 4 C 1.53004 * 109.47021 * 119.99948 * 2 1 3 5 5 C 1.50698 * 109.47386 * 183.68836 * 4 2 1 6 6 H 1.08002 * 119.99731 * 5.07268 * 5 4 2 7 7 C 1.37871 * 120.00144 * 185.06718 * 5 4 2 8 8 N 1.31516 * 120.00268 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99970 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46924 * 90.00136 * 9 7 5 11 11 H 1.48501 * 109.47441 * 209.99733 * 9 7 5 12 12 H 1.48499 * 109.47507 * 329.99964 * 9 7 5 13 13 N 1.46905 * 109.47278 * 239.99942 * 2 1 3 14 14 C 1.46960 * 110.99908 * 308.53136 * 13 2 1 15 15 C 1.53044 * 109.36200 * 183.19234 * 14 13 2 16 16 N 1.46962 * 109.36281 * 301.59756 * 15 14 13 17 17 C 1.39003 * 110.99998 * 183.19571 * 16 15 14 18 18 C 1.39341 * 120.09443 * 180.02562 * 17 16 15 19 19 N 1.31918 * 119.88605 * 180.02562 * 18 17 16 20 20 C 1.32268 * 120.08824 * 0.02562 * 19 18 17 21 21 C 1.38153 * 120.19827 * 359.97438 * 20 19 18 22 22 N 1.32252 * 120.10389 * 359.97438 * 21 20 19 23 23 C 1.46948 * 110.87913 * 59.32262 * 16 15 14 24 24 C 1.46950 * 110.99825 * 72.33275 * 13 2 1 25 25 H 1.08993 * 109.47019 * 300.00079 * 1 2 3 26 26 H 1.09004 * 109.46802 * 59.99905 * 1 2 3 27 27 H 1.09004 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47200 * 303.69236 * 4 2 1 29 29 H 1.09002 * 109.47104 * 63.68980 * 4 2 1 30 30 H 0.96998 * 120.00237 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.48767 * 63.22092 * 14 13 2 32 32 H 1.09000 * 109.48655 * 303.15391 * 14 13 2 33 33 H 1.09001 * 109.49182 * 181.63547 * 15 14 13 34 34 H 1.08998 * 109.49612 * 61.56178 * 15 14 13 35 35 H 1.07996 * 120.05160 * 0.04108 * 18 17 16 36 36 H 1.08008 * 119.89987 * 179.97438 * 20 19 18 37 37 H 1.07997 * 119.95060 * 180.02562 * 21 20 19 38 38 H 1.09004 * 109.49028 * 60.65003 * 23 16 15 39 39 H 1.09010 * 109.48918 * 180.71300 * 23 16 15 40 40 H 1.09001 * 109.49085 * 296.77543 * 24 13 2 41 41 H 1.09004 * 109.49152 * 56.82337 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5442 -0.6426 1.2959 6 1 4.0776 -0.0609 0.5587 7 6 4.2394 -1.3133 2.2797 8 7 5.5521 -1.2443 2.3207 9 14 3.3168 -2.3200 3.5543 10 1 3.1574 -3.7127 3.0644 11 1 4.0815 -2.3276 4.8273 12 1 1.9781 -1.7201 3.7847 13 7 2.0197 -0.6925 -1.1995 14 6 1.3895 -2.0127 -1.3395 15 6 1.9833 -2.7323 -2.5528 16 7 1.7662 -1.9178 -3.7567 17 6 2.2296 -2.5731 -4.8916 18 6 2.1180 -1.9685 -6.1420 19 7 2.5586 -2.5943 -7.2165 20 6 3.1050 -3.7940 -7.1078 21 6 3.2174 -4.3968 -5.8698 22 7 2.7792 -3.7759 -4.7874 23 6 2.3964 -0.5977 -3.6165 24 6 1.8027 0.1219 -2.4032 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6236 -0.2470 2.1381 29 1 1.7316 -1.7663 1.2168 30 1 6.0412 -1.7164 3.0126 31 1 0.3155 -1.8900 -1.4791 32 1 1.5748 -2.6013 -0.4410 33 1 1.4967 -3.6999 -2.6758 34 1 3.0526 -2.8792 -2.4011 35 1 1.6718 -0.9890 -6.2313 36 1 3.4643 -4.3038 -7.9895 37 1 3.6646 -5.3762 -5.7856 38 1 3.4705 -0.7204 -3.4769 39 1 2.2111 -0.0090 -4.5151 40 1 0.7334 0.2689 -2.5550 41 1 2.2890 1.0897 -2.2801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276362294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:09 Heat of formation + Delta-G solvation = 51.935598 kcal Electronic energy + Delta-G solvation = -21806.240632 eV Core-core repulsion = 18720.885800 eV Total energy + Delta-G solvation = -3085.354832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28948 -40.43358 -37.82460 -35.20362 -34.72330 -33.10283 -32.09849 -30.97496 -29.54175 -27.26584 -26.11177 -24.82620 -24.17092 -23.81007 -21.65302 -20.18157 -18.78006 -18.64230 -18.46141 -17.60560 -16.76482 -16.46047 -16.27708 -15.74516 -15.53212 -15.46514 -15.18354 -14.86940 -14.59476 -14.11719 -13.86498 -13.77794 -13.44179 -13.10864 -12.95004 -12.68923 -12.52339 -12.29331 -12.27782 -12.19174 -11.95424 -11.70945 -11.58624 -11.34554 -11.08550 -11.02503 -10.65983 -10.08316 -9.30618 -8.91359 -8.16851 -6.15137 -0.15644 0.15670 1.37195 1.38406 1.49317 2.31707 2.42309 2.77574 3.03312 3.22785 3.28651 3.40424 3.55772 3.84059 3.98954 4.11359 4.23070 4.26172 4.30144 4.35711 4.39268 4.45849 4.55671 4.57871 4.60453 4.77505 4.84915 4.90089 4.99993 5.02014 5.15442 5.20525 5.27719 5.30543 5.49290 5.54929 5.76239 5.89185 6.33224 6.37850 6.40398 6.52967 6.84199 6.92426 7.45445 9.00813 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.004618 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.299581 B = 6061.174141 C = 6666.028894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.066 0.934 4 C -0.003 4.003 5 C -0.486 4.486 6 H 0.033 0.967 7 C -0.003 4.003 8 N -0.960 5.960 9 Si 0.941 3.059 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.541 5.541 14 C 0.061 3.939 15 C 0.082 3.918 16 N -0.467 5.467 17 C 0.251 3.749 18 C 0.036 3.964 19 N -0.438 5.438 20 C 0.014 3.986 21 C 0.076 3.924 22 N -0.508 5.508 23 C 0.067 3.933 24 C 0.058 3.942 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.030 0.970 35 H 0.187 0.813 36 H 0.203 0.797 37 H 0.198 0.802 38 H 0.031 0.969 39 H 0.118 0.882 40 H 0.058 0.942 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -2.940 -17.103 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 H 0.084 0.916 4 C -0.041 4.041 5 C -0.524 4.524 6 H 0.052 0.948 7 C -0.197 4.197 8 N -0.603 5.603 9 Si 0.766 3.234 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.169 1.169 13 N -0.266 5.266 14 C -0.067 4.067 15 C -0.045 4.045 16 N -0.185 5.185 17 C 0.017 3.983 18 C -0.128 4.128 19 N -0.152 5.152 20 C -0.145 4.145 21 C -0.084 4.084 22 N -0.228 5.228 23 C -0.059 4.059 24 C -0.070 4.070 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.204 0.796 36 H 0.220 0.780 37 H 0.215 0.785 38 H 0.050 0.950 39 H 0.136 0.864 40 H 0.076 0.924 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.845 -2.936 -16.948 20.334 hybrid contribution 0.304 -0.633 1.000 1.222 sum -10.541 -3.569 -15.948 19.447 Atomic orbital electron populations 1.22399 0.96216 1.02159 1.02537 1.21480 0.92510 0.97115 0.89676 0.91555 1.19615 0.94522 0.95800 0.94139 1.21269 0.91820 1.28387 1.10925 0.94822 1.25916 0.95403 0.98229 1.00174 1.70083 1.08189 1.45998 1.36005 0.85794 0.79758 0.79461 0.78383 1.19891 1.21644 1.16944 1.62143 1.58831 1.03107 1.02494 1.22129 0.96754 0.90921 0.96909 1.21888 0.99430 0.95964 0.87226 1.59388 1.52488 1.04899 1.01692 1.21122 0.92150 0.91817 0.93229 1.23495 1.00412 1.02252 0.86675 1.68406 1.06514 1.08992 1.31279 1.24122 0.98323 0.92116 0.99947 1.24176 0.94721 1.01325 0.88205 1.68429 1.10070 1.09926 1.34422 1.22416 0.96137 0.87077 1.00232 1.22192 0.99964 0.96492 0.88352 0.91660 0.91497 0.92434 0.96133 0.96601 0.93163 0.92709 0.91429 0.89528 0.95184 0.79572 0.77989 0.78540 0.95044 0.86431 0.92441 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 8.39 71.98 0.60 -4.31 16 2 C 0.10 3.70 2.26 44.92 0.10 3.80 16 3 H 0.07 2.54 7.98 -2.39 -0.02 2.52 16 4 C 0.00 -0.15 3.46 29.85 0.10 -0.04 16 5 C -0.49 -27.86 9.36 25.60 0.24 -27.62 16 6 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 7 C 0.00 -0.15 5.47 84.65 0.46 0.31 16 8 N -0.96 -61.78 13.96 21.45 0.30 -61.48 16 9 Si 0.94 45.14 27.37 68.60 1.88 47.02 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.25 -10.80 6.69 99.48 0.67 -10.14 16 13 N -0.54 -19.44 4.32 -870.48 -3.76 -23.20 16 14 C 0.06 2.03 4.70 86.31 0.41 2.44 16 15 C 0.08 2.65 4.80 86.31 0.41 3.06 16 16 N -0.47 -12.82 4.74 -700.94 -3.32 -16.14 16 17 C 0.25 6.65 6.40 133.04 0.85 7.50 16 18 C 0.04 0.80 10.38 84.95 0.88 1.68 16 19 N -0.44 -9.59 10.49 -194.67 -2.04 -11.63 16 20 C 0.01 0.25 11.21 84.61 0.95 1.19 16 21 C 0.08 1.49 11.21 84.61 0.95 2.44 16 22 N -0.51 -13.86 8.89 -192.64 -1.71 -15.58 16 23 C 0.07 1.73 5.37 86.31 0.46 2.20 16 24 C 0.06 1.61 5.36 86.31 0.46 2.07 16 25 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.61 6.85 -2.38 -0.02 1.59 16 27 H 0.06 1.60 6.39 -2.38 -0.02 1.58 16 28 H 0.02 0.92 7.55 -2.38 -0.02 0.91 16 29 H 0.02 0.72 5.57 -2.39 -0.01 0.70 16 30 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.05 1.62 6.40 -2.39 -0.02 1.60 16 32 H 0.07 2.54 6.37 -2.39 -0.02 2.52 16 33 H 0.09 2.66 7.84 -2.39 -0.02 2.64 16 34 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 35 H 0.19 3.21 7.18 -2.91 -0.02 3.19 16 36 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.12 2.19 6.81 -2.38 -0.02 2.17 16 40 H 0.06 1.39 6.85 -2.39 -0.02 1.37 16 41 H 0.09 2.32 8.05 -2.38 -0.02 2.30 16 Total: -1.00 -72.56 319.63 -0.80 -73.36 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.98 Total: 12.93 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 6.89 Total: -5.29 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -10.54 Total: -128.03 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -72.56 -0.80 -73.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276362294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.295 kcal (2) G-P(sol) polarization free energy of solvation -72.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds