Wall clock time and date at job start Mon Mar 30 2020 02:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 N 1.46502 * 109.47258 * 239.99540 * 2 1 3 5 5 N 1.40086 * 126.02952 * 66.47331 * 4 2 1 6 6 C 1.30841 * 108.20149 * 179.85137 * 5 4 2 7 7 C 1.39875 * 108.20196 * 0.40841 * 6 5 4 8 8 C 1.34937 * 126.04157 * 246.78300 * 4 2 1 9 9 C 1.50706 * 126.12897 * 359.95820 * 8 4 2 10 10 N 1.46894 * 109.46916 * 272.83069 * 9 8 4 11 11 C 1.46905 * 110.99891 * 195.39764 * 10 9 8 12 12 C 1.50697 * 109.47129 * 161.77997 * 11 10 9 13 13 H 1.07993 * 120.00186 * 355.48471 * 12 11 10 14 14 C 1.37882 * 119.99922 * 175.48618 * 12 11 10 15 15 N 1.31504 * 120.00092 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99798 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47350 * 89.99929 * 16 14 12 18 18 H 1.48502 * 109.47121 * 210.00202 * 16 14 12 19 19 H 1.48504 * 109.47412 * 330.00186 * 16 14 12 20 20 C 1.46898 * 111.00342 * 71.44315 * 10 9 8 21 21 C 1.52999 * 109.47200 * 196.13788 * 20 10 9 22 22 C 1.47201 * 109.47183 * 174.47704 * 21 20 10 23 23 N 4.93409 * 140.95593 * 46.82681 * 2 1 3 24 24 H 1.08998 * 109.47388 * 299.99682 * 1 2 3 25 25 H 1.09004 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46848 * 60.00052 * 1 2 3 27 27 H 1.09003 * 109.47121 * 120.00042 * 2 1 3 28 28 H 1.09001 * 109.47150 * 55.46923 * 3 2 1 29 29 H 1.08994 * 109.47268 * 175.47686 * 3 2 1 30 30 H 1.09003 * 109.46620 * 295.47698 * 3 2 1 31 31 H 1.08000 * 125.89997 * 180.14197 * 6 5 4 32 32 H 1.07998 * 126.03817 * 179.73587 * 7 6 5 33 33 H 1.09005 * 109.46742 * 32.82689 * 9 8 4 34 34 H 1.09000 * 109.47203 * 152.82493 * 9 8 4 35 35 H 1.09008 * 109.46829 * 281.77930 * 11 10 9 36 36 H 1.08997 * 109.47189 * 41.77473 * 11 10 9 37 37 H 0.97003 * 120.00245 * 180.02562 * 15 14 12 38 38 H 1.08999 * 109.47186 * 316.13997 * 20 10 9 39 39 H 1.09002 * 109.46960 * 76.13841 * 20 10 9 40 40 H 1.09004 * 109.47101 * 294.47447 * 21 20 10 41 41 H 1.08997 * 109.47482 * 54.47722 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 -1.1961 5 7 1.8667 -0.2551 -2.5189 6 6 2.4355 -1.1321 -3.3058 7 6 2.9586 -2.1576 -2.5112 8 6 2.6886 -1.8617 -1.2187 9 6 3.0687 -2.6912 -0.0193 10 7 4.3614 -2.2305 0.5048 11 6 4.9393 -3.2197 1.4244 12 6 6.4129 -2.9510 1.5896 13 1 6.8887 -2.1746 1.0091 14 6 7.1537 -3.6966 2.4821 15 7 8.4396 -3.4619 2.6267 16 14 6.3306 -5.0392 3.4867 17 1 6.3943 -6.3232 2.7434 18 1 7.0322 -5.1848 4.7874 19 1 4.9107 -4.6770 3.7280 20 6 4.2287 -0.9206 1.1563 21 6 5.6137 -0.2932 1.3269 22 6 5.4717 1.0725 1.8573 23 7 5.3621 2.1266 2.2667 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6120 1.9792 0.8466 29 1 3.1270 1.4435 0.0810 30 1 1.7444 1.9323 -0.9278 31 1 2.4879 -1.0763 -4.3831 32 1 3.4850 -3.0311 -2.8666 33 1 2.3056 -2.5859 0.7519 34 1 3.1475 -3.7382 -0.3119 35 1 4.4457 -3.1467 2.3935 36 1 4.7958 -4.2208 1.0181 37 1 8.9608 -3.9867 3.2542 38 1 3.6083 -0.2696 0.5403 39 1 3.7639 -1.0466 2.1341 40 1 6.2014 -0.8935 2.0215 41 1 6.1178 -0.2573 0.3612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279787828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:23 Heat of formation + Delta-G solvation = 99.790449 kcal Electronic energy + Delta-G solvation = -22066.021341 eV Core-core repulsion = 18982.741652 eV Total energy + Delta-G solvation = -3083.279690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.24521 -39.07853 -37.39074 -36.61695 -34.60878 -33.06024 -31.64159 -30.60683 -29.45281 -28.31643 -26.36042 -24.67273 -23.77042 -22.18471 -21.35301 -20.06196 -19.40567 -17.81212 -17.66422 -16.95475 -16.49489 -15.94385 -15.88302 -15.65497 -15.21675 -15.10495 -14.57817 -14.43823 -14.26697 -14.12209 -13.92372 -13.71282 -13.35512 -13.28211 -13.14812 -13.05893 -12.83537 -12.44724 -12.40320 -12.34391 -12.23762 -12.06790 -11.86839 -11.55350 -11.34174 -11.12533 -10.59294 -10.15407 -9.33892 -9.07087 -8.13489 -6.13554 0.99080 1.45131 1.48453 1.54594 1.63288 1.74501 1.81379 2.04526 2.45636 2.92773 3.20565 3.46588 3.50456 3.78816 3.89221 3.95607 4.10241 4.14488 4.18257 4.31536 4.51840 4.57617 4.60070 4.69630 4.73158 4.75520 4.90613 4.91724 4.97378 5.03206 5.13996 5.16074 5.18282 5.34976 5.40660 5.67116 5.91104 6.00897 6.20787 6.29027 6.57816 6.67869 6.90293 6.94410 7.47804 9.00208 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016922 B = 0.005989 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.266019 B = 4674.498801 C = 5442.611505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 C -0.156 4.156 4 N -0.366 5.366 5 N -0.323 5.323 6 C 0.038 3.962 7 C -0.267 4.267 8 C 0.089 3.911 9 C 0.115 3.885 10 N -0.528 5.528 11 C 0.163 3.837 12 C -0.507 4.507 13 H 0.071 0.929 14 C 0.016 3.984 15 N -0.943 5.943 16 Si 0.926 3.074 17 H -0.272 1.272 18 H -0.296 1.296 19 H -0.244 1.244 20 C 0.063 3.937 21 C -0.029 4.029 22 C 0.236 3.764 23 N -0.490 5.490 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.205 0.795 32 H 0.155 0.845 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.003 0.997 36 H 0.037 0.963 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.131 0.869 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 1.596 -5.921 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.039 3.961 3 C -0.213 4.213 4 N -0.150 5.150 5 N -0.145 5.145 6 C -0.146 4.146 7 C -0.297 4.297 8 C -0.038 4.038 9 C -0.014 4.014 10 N -0.252 5.252 11 C 0.036 3.964 12 C -0.546 4.546 13 H 0.089 0.911 14 C -0.182 4.182 15 N -0.584 5.584 16 Si 0.752 3.248 17 H -0.197 1.197 18 H -0.223 1.223 19 H -0.168 1.168 20 C -0.066 4.066 21 C -0.069 4.069 22 C -0.080 4.080 23 N -0.168 5.168 24 H 0.114 0.886 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.222 0.778 32 H 0.173 0.827 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.021 0.979 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.148 0.852 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.488 4.343 -5.415 17.889 hybrid contribution 0.485 -1.900 0.946 2.178 sum -16.003 2.443 -4.469 16.794 Atomic orbital electron populations 1.22107 0.92027 1.03038 1.03897 1.21600 0.96533 0.93950 0.83972 1.22105 1.00764 0.94626 1.03828 1.48907 1.43788 1.16711 1.05594 1.77184 1.25721 1.24188 0.87359 1.24249 0.96999 0.92276 1.01124 1.21464 1.12078 1.04759 0.91386 1.21155 0.96462 0.88774 0.97451 1.20735 0.90343 0.98512 0.91830 1.61693 1.22592 1.02648 1.38282 1.20192 0.94189 0.91799 0.90184 1.21448 0.92781 1.18855 1.21493 0.91116 1.25631 0.94990 0.99274 0.98259 1.70016 1.07972 1.42446 1.37980 0.86032 0.80098 0.80500 0.78185 1.19731 1.22313 1.16773 1.22201 0.94994 0.91575 0.97829 1.19868 1.00742 0.82527 1.03812 1.29777 0.91548 0.94853 0.91849 1.81120 1.10466 1.13514 1.11716 0.88636 0.92059 0.92100 0.87668 0.89078 0.93699 0.91600 0.77798 0.82735 0.92758 0.87107 0.97941 0.94474 0.92855 0.89744 0.93802 0.85177 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.52 71.98 0.69 -2.00 16 2 C 0.14 3.07 2.45 44.99 0.11 3.18 16 3 C -0.16 -3.48 9.08 71.98 0.65 -2.82 16 4 N -0.37 -9.60 3.04 -314.29 -0.96 -10.56 16 5 N -0.32 -9.04 12.30 -57.02 -0.70 -9.74 16 6 C 0.04 0.95 12.03 85.24 1.03 1.97 16 7 C -0.27 -6.93 10.72 21.99 0.24 -6.70 16 8 C 0.09 2.41 5.89 41.41 0.24 2.65 16 9 C 0.11 3.02 5.10 85.56 0.44 3.45 16 10 N -0.53 -17.15 4.44 -905.35 -4.02 -21.16 16 11 C 0.16 6.21 3.84 85.56 0.33 6.54 16 12 C -0.51 -24.12 7.42 25.60 0.19 -23.93 16 13 H 0.07 3.64 6.07 -2.91 -0.02 3.63 16 14 C 0.02 0.84 5.47 84.66 0.46 1.30 16 15 N -0.94 -53.44 13.96 21.45 0.30 -53.14 16 16 Si 0.93 39.06 27.56 68.60 1.89 40.95 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 18 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.24 -9.29 6.41 99.48 0.64 -8.65 16 20 C 0.06 1.91 3.72 86.30 0.32 2.23 16 21 C -0.03 -0.99 4.42 28.79 0.13 -0.86 16 22 C 0.24 8.02 15.43 89.44 1.38 9.40 16 23 N -0.49 -17.92 18.54 20.01 0.37 -17.55 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.11 2.22 5.04 -2.39 -0.01 2.20 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.18 6.76 -2.39 -0.02 1.16 16 30 H 0.06 1.56 8.04 -2.39 -0.02 1.54 16 31 H 0.21 3.58 8.06 -2.91 -0.02 3.55 16 32 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.05 1.25 7.26 -2.38 -0.02 1.23 16 34 H 0.11 2.69 7.71 -2.39 -0.02 2.67 16 35 H 0.00 0.11 6.55 -2.38 -0.02 0.09 16 36 H 0.04 1.38 7.34 -2.39 -0.02 1.36 16 37 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.08 2.35 2.43 -2.39 -0.01 2.34 16 39 H 0.04 1.26 7.83 -2.39 -0.02 1.24 16 40 H 0.13 5.21 5.28 -2.38 -0.01 5.19 16 41 H 0.11 3.69 7.98 -2.39 -0.02 3.67 16 Total: -1.00 -60.22 330.84 4.05 -56.17 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.97 Total: 20.60 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 6.20 Total: -5.58 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -5.01 Total: -112.14 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.89 Total: 40.95 kcal Total: -60.22 4.05 -56.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279787828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.963 kcal (2) G-P(sol) polarization free energy of solvation -60.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds